Protein–RNA interactions for Protein: Q9UKF6

CPSF3, Cleavage and polyadenylation specificity factor subunit 3, humanhuman

Known RBP Predictions only

Length 684 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF3Q9UKF6 AC007879.4-201ENST00000440545 361 ntTSL 3 BASIC3.24□□□□□ -1.89
CPSF3Q9UKF6 IGKV1OR-3-201ENST00000446944 348 ntBASIC3.24□□□□□ -1.89
CPSF3Q9UKF6 AL078587.1-201ENST00000448580 542 ntTSL 5 BASIC3.24□□□□□ -1.89
CPSF3Q9UKF6 AL359095.1-201ENST00000457383 635 ntTSL 3 BASIC3.24□□□□□ -1.89
CPSF3Q9UKF6 AC091179.1-201ENST00000461606 579 ntBASIC3.24□□□□□ -1.89
CPSF3Q9UKF6 RPL31P60-201ENST00000478450 367 ntBASIC3.24□□□□□ -1.89
CPSF3Q9UKF6 C4orf33-204ENST00000502887 1126 ntTSL 1 (best) BASIC3.24□□□□□ -1.89
CPSF3Q9UKF6 LINC02110-201ENST00000503870 546 ntTSL 3 BASIC3.24□□□□□ -1.89
CPSF3Q9UKF6 DSTNP2-201ENST00000504533 515 ntBASIC3.24□□□□□ -1.89
CPSF3Q9UKF6 PRR16-204ENST00000505123 1298 ntTSL 3 BASIC3.24□□□□□ -1.89
CPSF3Q9UKF6 AC097467.3-213ENST00000508191 726 ntTSL 3 BASIC3.24□□□□□ -1.89
CPSF3Q9UKF6 AC010486.3-201ENST00000511602 785 ntBASIC3.24□□□□□ -1.89
CPSF3Q9UKF6 AC118465.1-201ENST00000513820 1271 ntBASIC3.24□□□□□ -1.89
CPSF3Q9UKF6 AC010261.1-201ENST00000514411 457 ntTSL 5 BASIC3.24□□□□□ -1.89
CPSF3Q9UKF6 SNHG6-202ENST00000520619 479 ntTSL 3 BASIC3.24□□□□□ -1.89
CPSF3Q9UKF6 MAL2-206ENST00000522187 547 ntTSL 4 BASIC3.24□□□□□ -1.89
CPSF3Q9UKF6 AP000790.2-201ENST00000534388 522 ntTSL 3 BASIC3.24□□□□□ -1.89
CPSF3Q9UKF6 AL132780.1-202ENST00000548322 591 ntTSL 4 BASIC3.24□□□□□ -1.89
CPSF3Q9UKF6 LINC02345-201ENST00000557883 766 ntTSL 3 BASIC3.24□□□□□ -1.89
CPSF3Q9UKF6 LINC01491-201ENST00000558434 505 ntTSL 3 BASIC3.24□□□□□ -1.89
CPSF3Q9UKF6 MTCO3P24-201ENST00000572729 782 ntBASIC3.24□□□□□ -1.89
CPSF3Q9UKF6 MIR3609-201ENST00000582661 80 ntBASIC3.24□□□□□ -1.89
CPSF3Q9UKF6 AC098848.1-201ENST00000588466 567 ntTSL 4 BASIC3.24□□□□□ -1.89
CPSF3Q9UKF6 AF131215.7-201ENST00000602443 707 ntBASIC3.24□□□□□ -1.89
CPSF3Q9UKF6 AP001172.2-201ENST00000602454 467 ntTSL 5 BASIC3.24□□□□□ -1.89
CPSF3Q9UKF6 AC068790.3-201ENST00000602988 553 ntBASIC3.24□□□□□ -1.89
CPSF3Q9UKF6 AC108747.1-201ENST00000609508 535 ntBASIC3.24□□□□□ -1.89
CPSF3Q9UKF6 AC093838.1-201ENST00000613014 469 ntBASIC3.24□□□□□ -1.89
CPSF3Q9UKF6 MIR4275-201ENST00000636486 87 ntBASIC3.24□□□□□ -1.89
CPSF3Q9UKF6 MIR3974-201ENST00000637126 96 ntBASIC3.24□□□□□ -1.89
CPSF3Q9UKF6 DDX10P1-201ENST00000448545 1933 ntBASIC3.24□□□□□ -1.89
CPSF3Q9UKF6 ZNF479-202ENST00000331162 2072 ntAPPRIS P1 TSL 1 (best) BASIC3.24□□□□□ -1.89
CPSF3Q9UKF6 PRKACB-217ENST00000610457 4206 ntTSL 2 BASIC3.24□□□□□ -1.89
CPSF3Q9UKF6 AC004972.1-201ENST00000623934 2209 ntBASIC3.24□□□□□ -1.89
CPSF3Q9UKF6 FAM35CP-201ENST00000554755 2470 ntBASIC3.24□□□□□ -1.89
CPSF3Q9UKF6 TPTE2P4-201ENST00000258589 1605 ntBASIC3.23□□□□□ -1.89
CPSF3Q9UKF6 AF165147.1-201ENST00000433310 6103 ntTSL 2 BASIC3.23□□□□□ -1.89
CPSF3Q9UKF6 APOH-201ENST00000205948 1176 ntAPPRIS P1 TSL 1 (best) BASIC3.23□□□□□ -1.89
CPSF3Q9UKF6 RNU5F-7P-201ENST00000363696 115 ntBASIC3.23□□□□□ -1.89
CPSF3Q9UKF6 RNU6-1027P-201ENST00000383998 107 ntBASIC3.23□□□□□ -1.89
CPSF3Q9UKF6 RNU6-533P-201ENST00000384144 107 ntBASIC3.23□□□□□ -1.89
CPSF3Q9UKF6 RNA5SP252-201ENST00000391131 119 ntBASIC3.23□□□□□ -1.89
CPSF3Q9UKF6 SNORA26.8-201ENST00000391306 124 ntBASIC3.23□□□□□ -1.89
CPSF3Q9UKF6 RNA5SP274-201ENST00000410484 108 ntBASIC3.23□□□□□ -1.89
CPSF3Q9UKF6 UBE2FP1-201ENST00000416536 447 ntBASIC3.23□□□□□ -1.89
CPSF3Q9UKF6 AL023581.1-201ENST00000423500 455 ntTSL 2 BASIC3.23□□□□□ -1.89
CPSF3Q9UKF6 AL356867.1-201ENST00000429623 299 ntBASIC3.23□□□□□ -1.89
CPSF3Q9UKF6 OR2B8P-201ENST00000432841 938 ntBASIC3.23□□□□□ -1.89
CPSF3Q9UKF6 AL137789.1-201ENST00000439443 682 ntTSL 3 BASIC3.23□□□□□ -1.89
CPSF3Q9UKF6 AL390961.1-201ENST00000446557 319 ntTSL 2 BASIC3.23□□□□□ -1.89
CPSF3Q9UKF6 NANOGNBP1-201ENST00000448444 480 ntBASIC3.23□□□□□ -1.89
CPSF3Q9UKF6 AC093110.1-201ENST00000456363 602 ntTSL 2 BASIC3.23□□□□□ -1.89
CPSF3Q9UKF6 AL049874.1-201ENST00000489560 388 ntBASIC3.23□□□□□ -1.89
CPSF3Q9UKF6 RPS15AP36-201ENST00000492022 382 ntBASIC3.23□□□□□ -1.89
CPSF3Q9UKF6 AC006445.2-201ENST00000510061 472 ntBASIC3.23□□□□□ -1.89
CPSF3Q9UKF6 AC068657.1-201ENST00000520807 306 ntBASIC3.23□□□□□ -1.89
CPSF3Q9UKF6 AC060788.1-201ENST00000521318 469 ntBASIC3.23□□□□□ -1.89
CPSF3Q9UKF6 AP000857.1-201ENST00000532151 543 ntBASIC3.23□□□□□ -1.89
CPSF3Q9UKF6 AC078889.1-201ENST00000536412 523 ntTSL 2 BASIC3.23□□□□□ -1.89
CPSF3Q9UKF6 APAF1-207ENST00000547743 651 ntTSL 3 BASIC3.23□□□□□ -1.89
CPSF3Q9UKF6 AC123904.2-201ENST00000548059 300 ntBASIC3.23□□□□□ -1.89
CPSF3Q9UKF6 AC013417.1-201ENST00000549896 271 ntTSL 5 BASIC3.23□□□□□ -1.89
CPSF3Q9UKF6 AL136537.2-201ENST00000562049 2471 ntTSL 1 (best) BASIC3.23□□□□□ -1.89
CPSF3Q9UKF6 AL356432.3-201ENST00000568952 465 ntBASIC3.23□□□□□ -1.89
CPSF3Q9UKF6 AC012065.4-201ENST00000602445 679 ntBASIC3.23□□□□□ -1.89
CPSF3Q9UKF6 AC093732.2-201ENST00000607950 274 ntBASIC3.23□□□□□ -1.89
CPSF3Q9UKF6 AC007038.2-201ENST00000608095 740 ntBASIC3.23□□□□□ -1.89
CPSF3Q9UKF6 AC004908.2-201ENST00000609090 574 ntBASIC3.23□□□□□ -1.89
CPSF3Q9UKF6 AC090132.2-201ENST00000615881 347 ntBASIC3.23□□□□□ -1.89
CPSF3Q9UKF6 ELF1-201ENST00000239882 3566 ntAPPRIS P1 TSL 1 (best) BASIC3.23□□□□□ -1.89
CPSF3Q9UKF6 AC000403.1-201ENST00000613696 3585 ntBASIC3.23□□□□□ -1.89
CPSF3Q9UKF6 CUL3-204ENST00000409777 3147 ntTSL 1 (best) BASIC3.23□□□□□ -1.89
CPSF3Q9UKF6 OR4G2P-202ENST00000641004 1759 ntBASIC3.23□□□□□ -1.89
CPSF3Q9UKF6 SDAD1P2-201ENST00000441308 2028 ntBASIC3.22□□□□□ -1.89
CPSF3Q9UKF6 BMP5-201ENST00000370830 3952 ntAPPRIS P1 TSL 1 (best) BASIC3.22□□□□□ -1.89
CPSF3Q9UKF6 FKTN-204ENST00000448551 1700 ntTSL 2 BASIC3.22□□□□□ -1.89
CPSF3Q9UKF6 ZNF626-204ENST00000612591 4404 ntAPPRIS P1 TSL 5 BASIC3.22□□□□□ -1.89
CPSF3Q9UKF6 CD24P4-201ENST00000382840 243 ntBASIC3.22□□□□□ -1.89
CPSF3Q9UKF6 MIR514A1-201ENST00000385133 98 ntBASIC3.22□□□□□ -1.89
CPSF3Q9UKF6 UBA52P6-201ENST00000399822 382 ntBASIC3.22□□□□□ -1.89
CPSF3Q9UKF6 AL109755.1-201ENST00000401791 649 ntBASIC3.22□□□□□ -1.89
CPSF3Q9UKF6 Z92545.1-201ENST00000411782 234 ntBASIC3.22□□□□□ -1.89
CPSF3Q9UKF6 USP9YP13-201ENST00000417797 480 ntBASIC3.22□□□□□ -1.89
CPSF3Q9UKF6 AC018630.2-202ENST00000422992 927 ntBASIC3.22□□□□□ -1.89
CPSF3Q9UKF6 CYCSP46-201ENST00000423569 204 ntBASIC3.22□□□□□ -1.89
CPSF3Q9UKF6 AL390023.1-201ENST00000428836 262 ntBASIC3.22□□□□□ -1.89
CPSF3Q9UKF6 MIR1302-2HG-201ENST00000469289 535 ntTSL 5 BASIC3.22□□□□□ -1.89
CPSF3Q9UKF6 AC080014.1-201ENST00000496877 1201 ntBASIC3.22□□□□□ -1.89
CPSF3Q9UKF6 AC025244.2-201ENST00000509215 422 ntTSL 3 BASIC3.22□□□□□ -1.89
CPSF3Q9UKF6 GMPSP1-201ENST00000514075 579 ntBASIC3.22□□□□□ -1.89
CPSF3Q9UKF6 RNU6-201P-201ENST00000517100 61 ntBASIC3.22□□□□□ -1.89
CPSF3Q9UKF6 HMGN1P28-201ENST00000521340 364 ntBASIC3.22□□□□□ -1.89
CPSF3Q9UKF6 OR5G4P-201ENST00000525251 760 ntBASIC3.22□□□□□ -1.89
CPSF3Q9UKF6 AP002748.2-201ENST00000528671 348 ntBASIC3.22□□□□□ -1.89
CPSF3Q9UKF6 VBP1-203ENST00000535916 944 ntTSL 2 BASIC3.22□□□□□ -1.89
CPSF3Q9UKF6 AC022080.3-201ENST00000544433 482 ntBASIC3.22□□□□□ -1.89
CPSF3Q9UKF6 MAPK1-204ENST00000544786 951 ntTSL 1 (best) BASIC3.22□□□□□ -1.89
CPSF3Q9UKF6 AC069029.1-201ENST00000558736 263 ntTSL 2 BASIC3.22□□□□□ -1.89
CPSF3Q9UKF6 AC020978.4-201ENST00000569088 460 ntTSL 3 BASIC3.22□□□□□ -1.89
CPSF3Q9UKF6 ABBA01006766.1-201ENST00000584728 294 ntBASIC3.22□□□□□ -1.89
Retrieved 100 of 98,524 protein–RNA pairs in 188.5 ms