Protein–RNA interactions for Protein: Q96M95

CCDC42, Coiled-coil domain-containing protein 42, humanhuman

Predictions only

Length 316 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC42Q96M95 AL133372.3-201ENST00000553082 821 ntTSL 3 BASIC1.94□□□□□ -2.1
CCDC42Q96M95 MIR3618-201ENST00000580330 88 ntBASIC1.94□□□□□ -2.1
CCDC42Q96M95 AC097717.1-211ENST00000600604 687 ntTSL 5 BASIC1.94□□□□□ -2.1
CCDC42Q96M95 AC068790.3-201ENST00000602988 553 ntBASIC1.94□□□□□ -2.1
CCDC42Q96M95 AC034238.1-213ENST00000611148 150 ntTSL 5 BASIC1.94□□□□□ -2.1
CCDC42Q96M95 AC006213.5-201ENST00000619673 288 ntBASIC1.94□□□□□ -2.1
CCDC42Q96M95 MFSD8-213ENST00000641134 1327 ntBASIC1.93□□□□□ -2.1
CCDC42Q96M95 AC021237.1-201ENST00000504175 1643 ntTSL 2 BASIC1.93□□□□□ -2.1
CCDC42Q96M95 RNU6-76P-201ENST00000384060 104 ntBASIC1.93□□□□□ -2.1
CCDC42Q96M95 RNU6-217P-201ENST00000384164 104 ntBASIC1.93□□□□□ -2.1
CCDC42Q96M95 MIR514A1-201ENST00000385133 98 ntBASIC1.93□□□□□ -2.1
CCDC42Q96M95 UBE2V1P2-201ENST00000397758 440 ntBASIC1.93□□□□□ -2.1
CCDC42Q96M95 SNORA3.2-201ENST00000408221 125 ntBASIC1.93□□□□□ -2.1
CCDC42Q96M95 AC005062.1-207ENST00000418442 587 ntTSL 3 BASIC1.93□□□□□ -2.1
CCDC42Q96M95 LINC02559-201ENST00000420391 188 ntTSL 2 BASIC1.93□□□□□ -2.1
CCDC42Q96M95 AL139413.1-201ENST00000421309 217 ntBASIC1.93□□□□□ -2.1
CCDC42Q96M95 AL022396.1-201ENST00000427011 386 ntTSL 3 BASIC1.93□□□□□ -2.1
CCDC42Q96M95 LINC00353-201ENST00000435401 685 ntTSL 5 BASIC1.93□□□□□ -2.1
CCDC42Q96M95 AC007000.2-201ENST00000442564 487 ntBASIC1.93□□□□□ -2.1
CCDC42Q96M95 AL136380.1-201ENST00000447970 162 ntBASIC1.93□□□□□ -2.1
CCDC42Q96M95 MTCO1P48-201ENST00000448024 1096 ntBASIC1.93□□□□□ -2.1
CCDC42Q96M95 FABP5P13-201ENST00000452144 328 ntBASIC1.93□□□□□ -2.1
CCDC42Q96M95 ATG12P2-201ENST00000456830 416 ntBASIC1.93□□□□□ -2.1
CCDC42Q96M95 MRPS17P3-201ENST00000465453 385 ntBASIC1.93□□□□□ -2.1
CCDC42Q96M95 LINC02174-201ENST00000508977 553 ntTSL 3 BASIC1.93□□□□□ -2.1
CCDC42Q96M95 AC017037.2-201ENST00000513850 890 ntBASIC1.93□□□□□ -2.1
CCDC42Q96M95 LINC02382-201ENST00000515840 614 ntTSL 1 (best) BASIC1.93□□□□□ -2.1
CCDC42Q96M95 RNU6-1256P-201ENST00000516539 103 ntBASIC1.93□□□□□ -2.1
CCDC42Q96M95 HSPE1P18-201ENST00000517602 280 ntBASIC1.93□□□□□ -2.1
CCDC42Q96M95 AC027309.2-201ENST00000520566 192 ntBASIC1.93□□□□□ -2.1
CCDC42Q96M95 AP003123.1-201ENST00000526041 333 ntTSL 2 BASIC1.93□□□□□ -2.1
CCDC42Q96M95 NIFKP8-201ENST00000560500 874 ntBASIC1.93□□□□□ -2.1
CCDC42Q96M95 AC074050.1-201ENST00000563247 211 ntBASIC1.93□□□□□ -2.1
CCDC42Q96M95 AC097467.3-208ENST00000593486 670 ntTSL 5 BASIC1.93□□□□□ -2.1
CCDC42Q96M95 AL627230.6-201ENST00000611129 280 ntBASIC1.93□□□□□ -2.1
CCDC42Q96M95 AC008498.1-201ENST00000613012 531 ntBASIC1.93□□□□□ -2.1
CCDC42Q96M95 AL158801.5-201ENST00000623123 465 ntBASIC1.93□□□□□ -2.1
CCDC42Q96M95 AC064859.1-201ENST00000624741 174 ntBASIC1.93□□□□□ -2.1
CCDC42Q96M95 ZNF639-206ENST00000484866 1730 ntAPPRIS P1 TSL 2 BASIC1.93□□□□□ -2.1
CCDC42Q96M95 HSPA4L-202ENST00000505726 2639 ntTSL 2 BASIC1.93□□□□□ -2.1
CCDC42Q96M95 AC012361.1-201ENST00000447260 1498 ntTSL 1 (best) BASIC1.93□□□□□ -2.1
CCDC42Q96M95 SNORD48-201ENST00000364953 64 ntBASIC1.92□□□□□ -2.1
CCDC42Q96M95 HMGB1P17-201ENST00000403495 628 ntBASIC1.92□□□□□ -2.1
CCDC42Q96M95 AC019129.1-201ENST00000403786 261 ntBASIC1.92□□□□□ -2.1
CCDC42Q96M95 RNA5SP80-201ENST00000410475 111 ntBASIC1.92□□□□□ -2.1
CCDC42Q96M95 CYCSP48-201ENST00000417124 323 ntBASIC1.92□□□□□ -2.1
CCDC42Q96M95 RPL31P63-201ENST00000422565 375 ntBASIC1.92□□□□□ -2.1
CCDC42Q96M95 HMGB1P9-201ENST00000429856 646 ntBASIC1.92□□□□□ -2.1
CCDC42Q96M95 AL513323.1-201ENST00000431862 1063 ntTSL 1 (best) BASIC1.92□□□□□ -2.1
CCDC42Q96M95 AC241584.1-201ENST00000438469 1241 ntBASIC1.92□□□□□ -2.1
CCDC42Q96M95 AC002542.1-201ENST00000440683 193 ntBASIC1.92□□□□□ -2.1
CCDC42Q96M95 OR10R1P-201ENST00000441524 1141 ntBASIC1.92□□□□□ -2.1
CCDC42Q96M95 AC055764.1-201ENST00000454526 473 ntTSL 3 BASIC1.92□□□□□ -2.1
CCDC42Q96M95 PCDH9-AS4-201ENST00000456459 436 ntTSL 3 BASIC1.92□□□□□ -2.1
CCDC42Q96M95 PPP1R2P5-201ENST00000457256 603 ntBASIC1.92□□□□□ -2.1
CCDC42Q96M95 AP1S2P1-201ENST00000457344 379 ntBASIC1.92□□□□□ -2.1
CCDC42Q96M95 CEP70-205ENST00000464035 1054 ntTSL 1 (best) BASIC1.92□□□□□ -2.1
CCDC42Q96M95 GPX5-203ENST00000469384 428 ntTSL 1 (best) BASIC1.92□□□□□ -2.1
CCDC42Q96M95 AC072039.1-201ENST00000477611 581 ntBASIC1.92□□□□□ -2.1
CCDC42Q96M95 RPL21P99-201ENST00000480369 423 ntBASIC1.92□□□□□ -2.1
CCDC42Q96M95 LARP1BP2-201ENST00000486594 519 ntBASIC1.92□□□□□ -2.1
CCDC42Q96M95 MRPS17P9-201ENST00000511924 393 ntBASIC1.92□□□□□ -2.1
CCDC42Q96M95 RNU1-103P-201ENST00000516502 125 ntBASIC1.92□□□□□ -2.1
CCDC42Q96M95 SNORA31.22-201ENST00000517204 135 ntBASIC1.92□□□□□ -2.1
CCDC42Q96M95 AC103957.1-201ENST00000517681 503 ntTSL 3 BASIC1.92□□□□□ -2.1
CCDC42Q96M95 TRIQK-209ENST00000519969 555 ntAPPRIS P1 TSL 4 BASIC1.92□□□□□ -2.1
CCDC42Q96M95 DEFB130C-201ENST00000528518 237 ntTSL 1 (best) BASIC1.92□□□□□ -2.1
CCDC42Q96M95 AC010186.2-204ENST00000537668 439 ntBASIC1.92□□□□□ -2.1
CCDC42Q96M95 AC009117.2-201ENST00000565374 504 ntTSL 3 BASIC1.92□□□□□ -2.1
CCDC42Q96M95 AC093519.1-201ENST00000566109 298 ntBASIC1.92□□□□□ -2.1
CCDC42Q96M95 AC010547.2-201ENST00000568523 409 ntTSL 5 BASIC1.92□□□□□ -2.1
CCDC42Q96M95 AC044840.1-201ENST00000577641 472 ntTSL 3 BASIC1.92□□□□□ -2.1
CCDC42Q96M95 UBE2Q2P6-201ENST00000612666 153 ntBASIC1.92□□□□□ -2.1
CCDC42Q96M95 RPL36A-210ENST00000614077 881 ntTSL 1 (best) BASIC1.92□□□□□ -2.1
CCDC42Q96M95 RMST_10.1-201ENST00000616309 154 ntBASIC1.92□□□□□ -2.1
CCDC42Q96M95 AL590808.1-201ENST00000618696 141 ntBASIC1.92□□□□□ -2.1
CCDC42Q96M95 ZNF849P-201ENST00000594711 1566 ntBASIC1.92□□□□□ -2.1
CCDC42Q96M95 SLCO1B3-202ENST00000381545 2805 ntAPPRIS P1 TSL 2 BASIC1.92□□□□□ -2.1
CCDC42Q96M95 GPR22-201ENST00000304402 2942 ntAPPRIS P1 TSL 1 (best) BASIC1.92□□□□□ -2.1
CCDC42Q96M95 HMGB1-201ENST00000326004 821 ntTSL 3 BASIC1.91□□□□□ -2.1
CCDC42Q96M95 OR6C75-201ENST00000343399 939 ntAPPRIS P1 BASIC1.91□□□□□ -2.1
CCDC42Q96M95 RNU6-525P-201ENST00000363685 104 ntBASIC1.91□□□□□ -2.1
CCDC42Q96M95 TMSB4XP8-201ENST00000402089 135 ntBASIC1.91□□□□□ -2.1
CCDC42Q96M95 TMSB4XP6-201ENST00000415187 135 ntBASIC1.91□□□□□ -2.1
CCDC42Q96M95 AP000550.2-201ENST00000417463 774 ntTSL 5 BASIC1.91□□□□□ -2.1
CCDC42Q96M95 AC244453.4-201ENST00000419150 388 ntBASIC1.91□□□□□ -2.1
CCDC42Q96M95 AL109913.1-201ENST00000421173 514 ntBASIC1.91□□□□□ -2.1
CCDC42Q96M95 AL445685.2-201ENST00000422551 342 ntBASIC1.91□□□□□ -2.1
CCDC42Q96M95 TMSB4XP1-201ENST00000424567 135 ntBASIC1.91□□□□□ -2.1
CCDC42Q96M95 MICF-203ENST00000432679 129 ntBASIC1.91□□□□□ -2.1
CCDC42Q96M95 AP000552.3-201ENST00000434730 775 ntTSL 5 BASIC1.91□□□□□ -2.1
CCDC42Q96M95 USP9YP15-201ENST00000442391 422 ntBASIC1.91□□□□□ -2.1
CCDC42Q96M95 RPL7P36-201ENST00000444633 681 ntBASIC1.91□□□□□ -2.1
CCDC42Q96M95 MTND5P8-201ENST00000449817 1083 ntBASIC1.91□□□□□ -2.1
CCDC42Q96M95 AC093110.1-201ENST00000456363 602 ntTSL 2 BASIC1.91□□□□□ -2.1
CCDC42Q96M95 AC105343.1-201ENST00000505586 358 ntTSL 3 BASIC1.91□□□□□ -2.1
CCDC42Q96M95 AC008549.1-201ENST00000512900 643 ntBASIC1.91□□□□□ -2.1
CCDC42Q96M95 AC118465.1-201ENST00000513820 1271 ntBASIC1.91□□□□□ -2.1
CCDC42Q96M95 RNA5SP135-201ENST00000517019 125 ntBASIC1.91□□□□□ -2.1
CCDC42Q96M95 SNORA31.23-201ENST00000517219 133 ntBASIC1.91□□□□□ -2.1
Retrieved 100 of 98,524 protein–RNA pairs in 102.2 ms