Protein–RNA interactions for Protein: Q8NEL0

CCDC54, Coiled-coil domain-containing protein 54, humanhuman

Predictions only

Length 328 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC54Q8NEL0 AL136363.1-201ENST00000605349 337 ntBASIC2.35□□□□□ -2.03
CCDC54Q8NEL0 AC093732.2-201ENST00000607950 274 ntBASIC2.35□□□□□ -2.03
CCDC54Q8NEL0 MIR8057-201ENST00000620957 69 ntBASIC2.35□□□□□ -2.03
CCDC54Q8NEL0 AL109837.2-201ENST00000632608 295 ntTSL 3 BASIC2.35□□□□□ -2.03
CCDC54Q8NEL0 IL6ST-201ENST00000336909 8776 ntAPPRIS P1 TSL 2 BASIC2.35□□□□□ -2.03
CCDC54Q8NEL0 MTND4P16-201ENST00000466108 1367 ntBASIC2.35□□□□□ -2.03
CCDC54Q8NEL0 ZBTB26-202ENST00000373656 4443 ntAPPRIS P1 TSL 1 (best) BASIC2.35□□□□□ -2.03
CCDC54Q8NEL0 SENP7-204ENST00000394085 1483 ntTSL 1 (best) BASIC2.34□□□□□ -2.03
CCDC54Q8NEL0 RNU5A-1-201ENST00000362698 116 ntBASIC2.34□□□□□ -2.03
CCDC54Q8NEL0 Y_RNA.97-201ENST00000363094 102 ntBASIC2.34□□□□□ -2.03
CCDC54Q8NEL0 RNA5SP88-201ENST00000365560 109 ntBASIC2.34□□□□□ -2.03
CCDC54Q8NEL0 SET-203ENST00000372688 801 ntTSL 2 BASIC2.34□□□□□ -2.03
CCDC54Q8NEL0 DEFB119-202ENST00000376315 324 ntAPPRIS ALT2 TSL 1 (best) BASIC2.34□□□□□ -2.03
CCDC54Q8NEL0 MIR9-1-201ENST00000385198 89 ntBASIC2.34□□□□□ -2.03
CCDC54Q8NEL0 MIR670-201ENST00000390142 98 ntBASIC2.34□□□□□ -2.03
CCDC54Q8NEL0 TRAJ59-201ENST00000390480 54 ntAPPRIS P1 BASIC2.34□□□□□ -2.03
CCDC54Q8NEL0 RNU6-754P-201ENST00000391166 107 ntBASIC2.34□□□□□ -2.03
CCDC54Q8NEL0 AC119751.3-201ENST00000399720 670 ntBASIC2.34□□□□□ -2.03
CCDC54Q8NEL0 MRPL30-202ENST00000409145 562 ntTSL 2 BASIC2.34□□□□□ -2.03
CCDC54Q8NEL0 MTCO1P17-201ENST00000411522 491 ntBASIC2.34□□□□□ -2.03
CCDC54Q8NEL0 RPS3AP25-201ENST00000411660 793 ntBASIC2.34□□□□□ -2.03
CCDC54Q8NEL0 FGF12-AS1-201ENST00000414920 580 ntTSL 4 BASIC2.34□□□□□ -2.03
CCDC54Q8NEL0 RPL35AP12-201ENST00000425362 338 ntBASIC2.34□□□□□ -2.03
CCDC54Q8NEL0 TRIM60P8Y-201ENST00000436338 762 ntBASIC2.34□□□□□ -2.03
CCDC54Q8NEL0 LINC01986-201ENST00000440867 590 ntTSL 5 BASIC2.34□□□□□ -2.03
CCDC54Q8NEL0 AL359853.2-201ENST00000442108 353 ntTSL 2 BASIC2.34□□□□□ -2.03
CCDC54Q8NEL0 MTCYBP3-201ENST00000445588 1137 ntBASIC2.34□□□□□ -2.03
CCDC54Q8NEL0 MRPL50P4-201ENST00000446432 475 ntBASIC2.34□□□□□ -2.03
CCDC54Q8NEL0 RPL37P4-201ENST00000448908 268 ntBASIC2.34□□□□□ -2.03
CCDC54Q8NEL0 RPS15AP34-201ENST00000487776 387 ntBASIC2.34□□□□□ -2.03
CCDC54Q8NEL0 SRIP1-201ENST00000489235 288 ntBASIC2.34□□□□□ -2.03
CCDC54Q8NEL0 AC110751.1-201ENST00000511916 462 ntTSL 3 BASIC2.34□□□□□ -2.03
CCDC54Q8NEL0 SCARNA15.2-201ENST00000516409 127 ntBASIC2.34□□□□□ -2.03
CCDC54Q8NEL0 OR5BN1P-201ENST00000532955 829 ntBASIC2.34□□□□□ -2.03
CCDC54Q8NEL0 AC008114.1-201ENST00000544122 427 ntTSL 2 BASIC2.34□□□□□ -2.03
CCDC54Q8NEL0 ACTR3BP3-201ENST00000565577 979 ntBASIC2.34□□□□□ -2.03
CCDC54Q8NEL0 ANKRD36BP2-206ENST00000575193 1245 ntBASIC2.34□□□□□ -2.03
CCDC54Q8NEL0 MIR4325-201ENST00000583049 90 ntBASIC2.34□□□□□ -2.03
CCDC54Q8NEL0 AC234772.3-201ENST00000602277 528 ntBASIC2.34□□□□□ -2.03
CCDC54Q8NEL0 SRGNP1-201ENST00000603392 451 ntBASIC2.34□□□□□ -2.03
CCDC54Q8NEL0 AL161756.2-201ENST00000604597 246 ntBASIC2.34□□□□□ -2.03
CCDC54Q8NEL0 AL035413.2-201ENST00000604801 525 ntBASIC2.34□□□□□ -2.03
CCDC54Q8NEL0 AC069200.1-201ENST00000609511 323 ntBASIC2.34□□□□□ -2.03
CCDC54Q8NEL0 AL355472.4-201ENST00000610233 626 ntBASIC2.34□□□□□ -2.03
CCDC54Q8NEL0 DLEU2_6.1-201ENST00000610536 112 ntBASIC2.34□□□□□ -2.03
CCDC54Q8NEL0 AL109811.3-202ENST00000612387 651 ntTSL 3 BASIC2.34□□□□□ -2.03
CCDC54Q8NEL0 AL161629.2-201ENST00000615347 275 ntBASIC2.34□□□□□ -2.03
CCDC54Q8NEL0 AL354810.1-201ENST00000618134 635 ntTSL 3 BASIC2.34□□□□□ -2.03
CCDC54Q8NEL0 CLECL1-204ENST00000621400 611 ntAPPRIS ALT2 TSL 5 BASIC2.34□□□□□ -2.03
CCDC54Q8NEL0 AC023510.2-201ENST00000622162 746 ntBASIC2.34□□□□□ -2.03
CCDC54Q8NEL0 AC103706.2-201ENST00000638080 240 ntBASIC2.34□□□□□ -2.03
CCDC54Q8NEL0 EVI2B-202ENST00000577894 1597 ntAPPRIS P1 TSL 2 BASIC2.34□□□□□ -2.03
CCDC54Q8NEL0 QSER1-204ENST00000527788 5052 ntTSL 2 BASIC2.34□□□□□ -2.04
CCDC54Q8NEL0 PABPC1P9-201ENST00000426076 1612 ntBASIC2.34□□□□□ -2.04
CCDC54Q8NEL0 LCORL-202ENST00000382224 4984 ntAPPRIS ALT2 TSL 5 BASIC2.33□□□□□ -2.04
CCDC54Q8NEL0 EYS-211ENST00000503581 10589 ntAPPRIS P3 TSL 5 BASIC2.33□□□□□ -2.04
CCDC54Q8NEL0 AL138713.1-201ENST00000624026 2130 ntBASIC2.33□□□□□ -2.04
CCDC54Q8NEL0 ZGRF1-212ENST00000612287 2176 ntTSL 1 (best) BASIC2.33□□□□□ -2.04
CCDC54Q8NEL0 CCT4P2-201ENST00000233836 1548 ntBASIC2.33□□□□□ -2.04
CCDC54Q8NEL0 MTCO1P9-201ENST00000505577 1534 ntBASIC2.33□□□□□ -2.04
CCDC54Q8NEL0 RNU6-660P-201ENST00000364566 109 ntBASIC2.33□□□□□ -2.04
CCDC54Q8NEL0 Y_RNA.302-201ENST00000364997 102 ntBASIC2.33□□□□□ -2.04
CCDC54Q8NEL0 MIR19A-201ENST00000384878 82 ntBASIC2.33□□□□□ -2.04
CCDC54Q8NEL0 AL109755.1-201ENST00000401791 649 ntBASIC2.33□□□□□ -2.04
CCDC54Q8NEL0 AL138827.1-201ENST00000402666 306 ntBASIC2.33□□□□□ -2.04
CCDC54Q8NEL0 MIR320C1-201ENST00000408566 88 ntBASIC2.33□□□□□ -2.04
CCDC54Q8NEL0 AC005162.2-201ENST00000411479 578 ntTSL 4 BASIC2.33□□□□□ -2.04
CCDC54Q8NEL0 AC078974.1-201ENST00000411597 223 ntBASIC2.33□□□□□ -2.04
CCDC54Q8NEL0 AC080125.1-201ENST00000414888 684 ntBASIC2.33□□□□□ -2.04
CCDC54Q8NEL0 AC083875.1-201ENST00000419509 405 ntBASIC2.33□□□□□ -2.04
CCDC54Q8NEL0 AC011233.1-201ENST00000422812 283 ntBASIC2.33□□□□□ -2.04
CCDC54Q8NEL0 AL022400.1-201ENST00000423946 935 ntBASIC2.33□□□□□ -2.04
CCDC54Q8NEL0 AC073641.1-201ENST00000425192 429 ntTSL 3 BASIC2.33□□□□□ -2.04
CCDC54Q8NEL0 AC234781.2-201ENST00000426370 994 ntBASIC2.33□□□□□ -2.04
CCDC54Q8NEL0 AC113331.1-201ENST00000428160 869 ntTSL 2 BASIC2.33□□□□□ -2.04
CCDC54Q8NEL0 AL139132.1-201ENST00000431587 344 ntBASIC2.33□□□□□ -2.04
CCDC54Q8NEL0 AC008568.1-203ENST00000433406 765 ntTSL 3 BASIC2.33□□□□□ -2.04
CCDC54Q8NEL0 AL353680.1-201ENST00000433788 337 ntTSL 3 BASIC2.33□□□□□ -2.04
CCDC54Q8NEL0 AC112220.1-201ENST00000434628 355 ntBASIC2.33□□□□□ -2.04
CCDC54Q8NEL0 BNIP3P2-201ENST00000441221 577 ntBASIC2.33□□□□□ -2.04
CCDC54Q8NEL0 AL358232.1-201ENST00000448030 501 ntBASIC2.33□□□□□ -2.04
CCDC54Q8NEL0 AL157373.1-201ENST00000456036 276 ntTSL 3 BASIC2.33□□□□□ -2.04
CCDC54Q8NEL0 AL136164.1-201ENST00000456795 352 ntTSL 3 BASIC2.33□□□□□ -2.04
CCDC54Q8NEL0 RPL30P5-201ENST00000494923 336 ntBASIC2.33□□□□□ -2.04
CCDC54Q8NEL0 OR5BM1P-201ENST00000512021 366 ntBASIC2.33□□□□□ -2.04
CCDC54Q8NEL0 LINC01216-201ENST00000515728 824 ntTSL 5 BASIC2.33□□□□□ -2.04
CCDC54Q8NEL0 RNA5SP341-201ENST00000516261 117 ntBASIC2.33□□□□□ -2.04
CCDC54Q8NEL0 RNA5SP471-201ENST00000516971 106 ntBASIC2.33□□□□□ -2.04
CCDC54Q8NEL0 SNORA31.21-201ENST00000517180 77 ntBASIC2.33□□□□□ -2.04
CCDC54Q8NEL0 AC013828.2-201ENST00000532487 235 ntBASIC2.33□□□□□ -2.04
CCDC54Q8NEL0 LINC02311-202ENST00000556819 477 ntTSL 3 BASIC2.33□□□□□ -2.04
CCDC54Q8NEL0 AC068135.2-201ENST00000569293 1028 ntBASIC2.33□□□□□ -2.04
CCDC54Q8NEL0 MIR4429-201ENST00000580105 73 ntBASIC2.33□□□□□ -2.04
CCDC54Q8NEL0 AC090616.3-201ENST00000582184 217 ntBASIC2.33□□□□□ -2.04
CCDC54Q8NEL0 AC008751.2-201ENST00000597885 980 ntBASIC2.33□□□□□ -2.04
CCDC54Q8NEL0 TUG1_2.1-201ENST00000614234 87 ntBASIC2.33□□□□□ -2.04
CCDC54Q8NEL0 AC112204.3-201ENST00000623822 332 ntBASIC2.33□□□□□ -2.04
CCDC54Q8NEL0 AC019226.1-201ENST00000625666 515 ntBASIC2.33□□□□□ -2.04
CCDC54Q8NEL0 VPS8-228ENST00000628962 207 ntTSL 5 BASIC2.33□□□□□ -2.04
CCDC54Q8NEL0 TECRL-202ENST00000507440 2876 ntTSL 5 BASIC2.33□□□□□ -2.04
Retrieved 100 of 98,524 protein–RNA pairs in 75 ms