Protein–RNA interactions for Protein: Q3L8U1

CHD9, Chromodomain-helicase-DNA-binding protein 9, humanhuman

Predictions only

Length 2,897 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHD9Q3L8U1 AC087808.1-201ENST00000520501 361 ntBASIC1.04□□□□□ -2.24
CHD9Q3L8U1 AC084819.1-201ENST00000537293 424 ntTSL 1 (best) BASIC1.04□□□□□ -2.24
CHD9Q3L8U1 AC009509.2-201ENST00000538640 429 ntTSL 2 BASIC1.04□□□□□ -2.24
CHD9Q3L8U1 AL391834.1-201ENST00000609609 560 ntBASIC1.04□□□□□ -2.24
CHD9Q3L8U1 AC011472.4-201ENST00000615848 491 ntBASIC1.04□□□□□ -2.24
CHD9Q3L8U1 AC110079.1-202ENST00000635213 138 ntBASIC1.04□□□□□ -2.24
CHD9Q3L8U1 BRCA1-202ENST00000354071 4497 ntTSL 1 (best) BASIC1.04□□□□□ -2.24
CHD9Q3L8U1 AC138915.1-201ENST00000565427 1685 ntBASIC1.04□□□□□ -2.24
CHD9Q3L8U1 CYSLTR1-203ENST00000614798 2681 ntAPPRIS P1 TSL 1 (best) BASIC1.04□□□□□ -2.24
CHD9Q3L8U1 MLF1-203ENST00000392822 2157 ntTSL 5 BASIC1.03□□□□□ -2.24
CHD9Q3L8U1 CFHR4-204ENST00000608469 1601 ntTSL 1 (best) BASIC1.03□□□□□ -2.24
CHD9Q3L8U1 IVNS1ABP-201ENST00000367497 746 ntTSL 5 BASIC1.03□□□□□ -2.24
CHD9Q3L8U1 AL030996.1-201ENST00000411430 235 ntBASIC1.03□□□□□ -2.24
CHD9Q3L8U1 AC244636.1-201ENST00000421152 228 ntBASIC1.03□□□□□ -2.24
CHD9Q3L8U1 MTATP6P4-201ENST00000427725 675 ntBASIC1.03□□□□□ -2.24
CHD9Q3L8U1 AP000949.1-201ENST00000438328 629 ntBASIC1.03□□□□□ -2.24
CHD9Q3L8U1 MTND2P8-201ENST00000450555 1025 ntBASIC1.03□□□□□ -2.24
CHD9Q3L8U1 AL353718.1-201ENST00000451028 517 ntBASIC1.03□□□□□ -2.24
CHD9Q3L8U1 TBL1XR1-AS1-201ENST00000454723 414 ntTSL 5 BASIC1.03□□□□□ -2.24
CHD9Q3L8U1 RPL30P12-201ENST00000474666 353 ntBASIC1.03□□□□□ -2.24
CHD9Q3L8U1 RPS15AP34-201ENST00000487776 387 ntBASIC1.03□□□□□ -2.24
CHD9Q3L8U1 AC002460.1-201ENST00000504394 370 ntTSL 3 BASIC1.03□□□□□ -2.24
CHD9Q3L8U1 AC244517.7-201ENST00000625144 398 ntTSL 3 BASIC1.03□□□□□ -2.24
CHD9Q3L8U1 AL136537.2-201ENST00000562049 2471 ntTSL 1 (best) BASIC1.03□□□□□ -2.24
CHD9Q3L8U1 FDCSP-201ENST00000317987 566 ntAPPRIS P1 TSL 1 (best) BASIC1.03□□□□□ -2.24
CHD9Q3L8U1 RNU6-492P-201ENST00000363035 104 ntBASIC1.03□□□□□ -2.24
CHD9Q3L8U1 AL590705.2-201ENST00000420204 281 ntTSL 5 BASIC1.03□□□□□ -2.24
CHD9Q3L8U1 FO393415.2-201ENST00000480085 343 ntBASIC1.03□□□□□ -2.24
CHD9Q3L8U1 RNU6-711P-201ENST00000517255 106 ntBASIC1.03□□□□□ -2.24
CHD9Q3L8U1 AC009597.1-201ENST00000521215 584 ntTSL 4 BASIC1.03□□□□□ -2.24
CHD9Q3L8U1 AC007495.2-201ENST00000562822 459 ntTSL 3 BASIC1.03□□□□□ -2.24
CHD9Q3L8U1 RPL23AP47-201ENST00000408017 460 ntBASIC1.02□□□□□ -2.25
CHD9Q3L8U1 AL139254.1-201ENST00000421114 376 ntTSL 3 BASIC1.02□□□□□ -2.25
CHD9Q3L8U1 AL390962.1-201ENST00000421507 526 ntTSL 3 BASIC1.02□□□□□ -2.25
CHD9Q3L8U1 RPL31P35-201ENST00000431058 377 ntBASIC1.02□□□□□ -2.25
CHD9Q3L8U1 TCF7L1-IT1-201ENST00000433581 458 ntTSL 3 BASIC1.02□□□□□ -2.25
CHD9Q3L8U1 AL360221.1-201ENST00000445989 335 ntBASIC1.02□□□□□ -2.25
CHD9Q3L8U1 RPL21P39-201ENST00000463605 483 ntBASIC1.02□□□□□ -2.25
CHD9Q3L8U1 RPL21P93-201ENST00000480465 489 ntBASIC1.02□□□□□ -2.25
CHD9Q3L8U1 AC233702.1-201ENST00000482905 502 ntBASIC1.02□□□□□ -2.25
CHD9Q3L8U1 AC093591.1-201ENST00000491435 481 ntBASIC1.02□□□□□ -2.25
CHD9Q3L8U1 RPL30P11-201ENST00000495304 339 ntBASIC1.02□□□□□ -2.25
CHD9Q3L8U1 MTND3P24-201ENST00000506306 329 ntBASIC1.02□□□□□ -2.25
CHD9Q3L8U1 AC093752.1-206ENST00000511823 336 ntBASIC1.02□□□□□ -2.25
CHD9Q3L8U1 AC007115.1-201ENST00000546853 234 ntBASIC1.02□□□□□ -2.25
CHD9Q3L8U1 ACTR3BP3-201ENST00000565577 979 ntBASIC1.02□□□□□ -2.25
CHD9Q3L8U1 AP003117.1-201ENST00000602771 554 ntBASIC1.02□□□□□ -2.25
CHD9Q3L8U1 ZNF639-210ENST00000621687 1458 ntAPPRIS P1 TSL 1 (best) BASIC1.02□□□□□ -2.25
CHD9Q3L8U1 SNORA7.2-201ENST00000364446 145 ntBASIC1.02□□□□□ -2.25
CHD9Q3L8U1 RNU4-52P-201ENST00000384209 138 ntBASIC1.02□□□□□ -2.25
CHD9Q3L8U1 AL353612.1-201ENST00000428769 465 ntTSL 3 BASIC1.02□□□□□ -2.25
CHD9Q3L8U1 LINC01680-201ENST00000434983 299 ntTSL 2 BASIC1.02□□□□□ -2.25
CHD9Q3L8U1 XKRYP6-201ENST00000440468 1116 ntBASIC1.02□□□□□ -2.25
CHD9Q3L8U1 XKRYP3-201ENST00000442113 1116 ntBASIC1.02□□□□□ -2.25
CHD9Q3L8U1 RPL37P6-202ENST00000464216 403 ntBASIC1.02□□□□□ -2.25
CHD9Q3L8U1 BZW1P2-201ENST00000473537 826 ntBASIC1.02□□□□□ -2.25
CHD9Q3L8U1 HMGN2P13-201ENST00000476476 274 ntBASIC1.02□□□□□ -2.25
CHD9Q3L8U1 LINC02027-201ENST00000482617 596 ntTSL 5 BASIC1.02□□□□□ -2.25
CHD9Q3L8U1 PGRMC2-204ENST00000503872 1028 ntTSL 3 BASIC1.02□□□□□ -2.25
CHD9Q3L8U1 AP004247.1-201ENST00000531556 1289 ntBASIC1.02□□□□□ -2.25
CHD9Q3L8U1 AL136298.1-202ENST00000556520 518 ntTSL 3 BASIC1.02□□□□□ -2.25
CHD9Q3L8U1 SNORD84-203ENST00000584275 78 ntBASIC1.02□□□□□ -2.25
CHD9Q3L8U1 AC091057.2-201ENST00000602594 792 ntBASIC1.02□□□□□ -2.25
CHD9Q3L8U1 MIR6857-201ENST00000613267 93 ntBASIC1.02□□□□□ -2.25
CHD9Q3L8U1 AC096656.1-201ENST00000623826 1364 ntBASIC1.02□□□□□ -2.25
CHD9Q3L8U1 CALCRL-201ENST00000392370 5155 ntAPPRIS P1 TSL 1 (best) BASIC1.02□□□□□ -2.25
CHD9Q3L8U1 CYLC2-202ENST00000487798 2053 ntAPPRIS P1 TSL 5 BASIC1.02□□□□□ -2.25
CHD9Q3L8U1 SNORA51.2-201ENST00000364595 132 ntBASIC1.02□□□□□ -2.25
CHD9Q3L8U1 NUP35P2-201ENST00000416748 943 ntBASIC1.02□□□□□ -2.25
CHD9Q3L8U1 CR848007.2-201ENST00000424918 787 ntBASIC1.02□□□□□ -2.25
CHD9Q3L8U1 SUMO1P4-201ENST00000429430 302 ntBASIC1.02□□□□□ -2.25
CHD9Q3L8U1 AC092783.1-201ENST00000435832 231 ntTSL 3 BASIC1.02□□□□□ -2.25
CHD9Q3L8U1 COX6CP18-201ENST00000448769 222 ntBASIC1.02□□□□□ -2.25
CHD9Q3L8U1 AC090096.1-201ENST00000489168 390 ntBASIC1.02□□□□□ -2.25
CHD9Q3L8U1 PDCD10-216ENST00000492396 814 ntTSL 5 BASIC1.02□□□□□ -2.25
CHD9Q3L8U1 MIR514B-201ENST00000516774 80 ntBASIC1.02□□□□□ -2.25
CHD9Q3L8U1 AC018861.2-201ENST00000518078 513 ntTSL 2 BASIC1.02□□□□□ -2.25
CHD9Q3L8U1 SETP2-201ENST00000553886 926 ntBASIC1.02□□□□□ -2.25
CHD9Q3L8U1 AC012378.1-201ENST00000561155 364 ntTSL 3 BASIC1.02□□□□□ -2.25
CHD9Q3L8U1 AC046158.1-201ENST00000563408 719 ntTSL 3 BASIC1.02□□□□□ -2.25
CHD9Q3L8U1 CLECL1-204ENST00000621400 611 ntAPPRIS ALT2 TSL 5 BASIC1.02□□□□□ -2.25
CHD9Q3L8U1 AC087521.4-201ENST00000637427 289 ntTSL 5 BASIC1.02□□□□□ -2.25
CHD9Q3L8U1 ZNF732-202ENST00000619749 2179 ntAPPRIS ALT2 TSL 2 BASIC1.01□□□□□ -2.25
CHD9Q3L8U1 MIR153-1-201ENST00000384914 90 ntBASIC1.01□□□□□ -2.25
CHD9Q3L8U1 RNU6ATAC27P-201ENST00000408289 119 ntBASIC1.01□□□□□ -2.25
CHD9Q3L8U1 AC244098.2-201ENST00000422068 99 ntBASIC1.01□□□□□ -2.25
CHD9Q3L8U1 AC015922.2-201ENST00000435593 184 ntBASIC1.01□□□□□ -2.25
CHD9Q3L8U1 LINC01455-201ENST00000503167 561 ntTSL 4 BASIC1.01□□□□□ -2.25
CHD9Q3L8U1 RNU1-61P-201ENST00000516107 151 ntBASIC1.01□□□□□ -2.25
CHD9Q3L8U1 AC012613.1-201ENST00000522685 387 ntTSL 2 BASIC1.01□□□□□ -2.25
CHD9Q3L8U1 LINC02301-201ENST00000553760 773 ntTSL 3 BASIC1.01□□□□□ -2.25
CHD9Q3L8U1 MIR4714-201ENST00000580728 77 ntBASIC1.01□□□□□ -2.25
CHD9Q3L8U1 COX6CP3-201ENST00000580869 223 ntBASIC1.01□□□□□ -2.25
CHD9Q3L8U1 FAM71BP1-201ENST00000604431 523 ntBASIC1.01□□□□□ -2.25
CHD9Q3L8U1 IL33-205ENST00000611532 757 ntTSL 1 (best) BASIC1.01□□□□□ -2.25
CHD9Q3L8U1 AC068620.4-201ENST00000636730 1182 ntBASIC1.01□□□□□ -2.25
CHD9Q3L8U1 AC025263.3-201ENST00000622965 1396 ntBASIC1.01□□□□□ -2.25
CHD9Q3L8U1 TSHB-201ENST00000256592 537 ntAPPRIS P1 TSL 5 BASIC1.01□□□□□ -2.25
CHD9Q3L8U1 CSN3-201ENST00000304954 836 ntAPPRIS P1 TSL 1 (best) BASIC1.01□□□□□ -2.25
CHD9Q3L8U1 VTRNA1-3-201ENST00000365645 89 ntBASIC1.01□□□□□ -2.25
Retrieved 100 of 98,524 protein–RNA pairs in 137.5 ms