Protein–RNA interactions for Protein: Q02388

COL7A1, Collagen alpha-1(VII) chain, humanhuman

Predictions only

Length 2,944 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1Q02388 AKAP7-208ENST00000537868 1006 ntTSL 5 BASIC0.77□□□□□ -2.29
COL7A1Q02388 AC104229.1-201ENST00000561364 255 ntBASIC0.77□□□□□ -2.29
COL7A1Q02388 MTCO3P24-201ENST00000572729 782 ntBASIC0.77□□□□□ -2.29
COL7A1Q02388 AC024619.4-201ENST00000580924 316 ntBASIC0.77□□□□□ -2.29
COL7A1Q02388 GAS5-AS1-201ENST00000602767 694 ntBASIC0.77□□□□□ -2.29
COL7A1Q02388 AC011330.2-201ENST00000621680 635 ntBASIC0.77□□□□□ -2.29
COL7A1Q02388 INPP4B-223ENST00000630044 354 ntTSL 5 BASIC0.77□□□□□ -2.29
COL7A1Q02388 ZNF85-203ENST00000345030 1689 ntAPPRIS ALT2 TSL 5 BASIC0.77□□□□□ -2.29
COL7A1Q02388 CATSPERB-201ENST00000256343 3623 ntAPPRIS P2 TSL 1 (best) BASIC0.77□□□□□ -2.29
COL7A1Q02388 CUL2-206ENST00000421317 2376 ntTSL 2 BASIC0.77□□□□□ -2.29
COL7A1Q02388 AC244636.1-201ENST00000421152 228 ntBASIC0.77□□□□□ -2.29
COL7A1Q02388 AL512661.1-201ENST00000434586 1253 ntBASIC0.77□□□□□ -2.29
COL7A1Q02388 MTND2P2-201ENST00000434633 945 ntBASIC0.77□□□□□ -2.29
COL7A1Q02388 DPPA3P1-201ENST00000448050 469 ntBASIC0.77□□□□□ -2.29
COL7A1Q02388 LINC02540-201ENST00000455554 570 ntTSL 3 BASIC0.77□□□□□ -2.29
COL7A1Q02388 ZBTB20-AS2-201ENST00000478301 372 ntTSL 2 BASIC0.77□□□□□ -2.29
COL7A1Q02388 PGRMC2-204ENST00000503872 1028 ntTSL 3 BASIC0.77□□□□□ -2.29
COL7A1Q02388 AC010625.1-201ENST00000511296 403 ntBASIC0.77□□□□□ -2.29
COL7A1Q02388 AC087808.1-201ENST00000520501 361 ntBASIC0.77□□□□□ -2.29
COL7A1Q02388 AC022017.1-201ENST00000608793 559 ntTSL 4 BASIC0.77□□□□□ -2.29
COL7A1Q02388 MIR7974-201ENST00000615835 79 ntBASIC0.77□□□□□ -2.29
COL7A1Q02388 MIR203B-201ENST00000636080 86 ntBASIC0.77□□□□□ -2.29
COL7A1Q02388 AL158064.1-201ENST00000627044 2242 ntTSL 4 BASIC0.76□□□□□ -2.29
COL7A1Q02388 RNU6-670P-201ENST00000364312 104 ntBASIC0.76□□□□□ -2.29
COL7A1Q02388 SNORA67.1-201ENST00000364749 141 ntBASIC0.76□□□□□ -2.29
COL7A1Q02388 TRAPPC2P10-201ENST00000415662 323 ntBASIC0.76□□□□□ -2.29
COL7A1Q02388 AL445123.1-201ENST00000422023 446 ntTSL 2 BASIC0.76□□□□□ -2.29
COL7A1Q02388 IFNA20P-201ENST00000436840 528 ntBASIC0.76□□□□□ -2.29
COL7A1Q02388 AL591721.1-201ENST00000439849 751 ntTSL 3 BASIC0.76□□□□□ -2.29
COL7A1Q02388 AP004607.1-201ENST00000524456 203 ntBASIC0.76□□□□□ -2.29
COL7A1Q02388 AC084757.1-201ENST00000559987 490 ntBASIC0.76□□□□□ -2.29
COL7A1Q02388 AC084373.1-201ENST00000603311 235 ntBASIC0.76□□□□□ -2.29
COL7A1Q02388 AC009318.3-201ENST00000616916 503 ntBASIC0.76□□□□□ -2.29
COL7A1Q02388 JTBP1-201ENST00000441314 247 ntBASIC0.76□□□□□ -2.29
COL7A1Q02388 GPM6BP3-201ENST00000442797 145 ntBASIC0.76□□□□□ -2.29
COL7A1Q02388 AL133260.2-201ENST00000445833 396 ntTSL 3 BASIC0.76□□□□□ -2.29
COL7A1Q02388 RPL7P31-201ENST00000450192 724 ntBASIC0.76□□□□□ -2.29
COL7A1Q02388 LINC00692-201ENST00000451284 932 ntTSL 1 (best) BASIC0.76□□□□□ -2.29
COL7A1Q02388 AC104472.2-201ENST00000469035 601 ntBASIC0.76□□□□□ -2.29
COL7A1Q02388 LIAS-206ENST00000513731 826 ntTSL 5 BASIC0.76□□□□□ -2.29
COL7A1Q02388 SNORA48.9-201ENST00000516419 162 ntBASIC0.76□□□□□ -2.29
COL7A1Q02388 AC007495.2-201ENST00000562822 459 ntTSL 3 BASIC0.76□□□□□ -2.29
COL7A1Q02388 AC123786.2-201ENST00000603459 275 ntBASIC0.76□□□□□ -2.29
COL7A1Q02388 BX322635.1-201ENST00000605804 496 ntBASIC0.76□□□□□ -2.29
COL7A1Q02388 AL135786.2-201ENST00000608422 615 ntBASIC0.76□□□□□ -2.29
COL7A1Q02388 ZNF33CP-201ENST00000432492 2030 ntBASIC0.76□□□□□ -2.29
COL7A1Q02388 SYCP2-202ENST00000371001 5479 ntAPPRIS P2 TSL 1 (best) BASIC0.76□□□□□ -2.29
COL7A1Q02388 OR1L1-201ENST00000309623 933 ntAPPRIS P1 BASIC0.75□□□□□ -2.29
COL7A1Q02388 Y_RNA.142-201ENST00000363491 102 ntBASIC0.75□□□□□ -2.29
COL7A1Q02388 OR1L1-202ENST00000373686 1083 ntBASIC0.75□□□□□ -2.29
COL7A1Q02388 AL356057.2-201ENST00000403318 432 ntBASIC0.75□□□□□ -2.29
COL7A1Q02388 RPL7P27-201ENST00000403775 720 ntBASIC0.75□□□□□ -2.29
COL7A1Q02388 AL078581.1-201ENST00000419134 340 ntTSL 5 BASIC0.75□□□□□ -2.29
COL7A1Q02388 ZNF90P2-204ENST00000419323 1075 ntBASIC0.75□□□□□ -2.29
COL7A1Q02388 TRAPPC2P5-201ENST00000426293 308 ntBASIC0.75□□□□□ -2.29
COL7A1Q02388 AL160411.1-201ENST00000429853 400 ntTSL 2 BASIC0.75□□□□□ -2.29
COL7A1Q02388 HMGB3P30-201ENST00000457863 606 ntBASIC0.75□□□□□ -2.29
COL7A1Q02388 MRPL42P6-201ENST00000486397 371 ntBASIC0.75□□□□□ -2.29
COL7A1Q02388 AC104806.1-201ENST00000508720 308 ntBASIC0.75□□□□□ -2.29
COL7A1Q02388 SNORA31.23-201ENST00000517219 133 ntBASIC0.75□□□□□ -2.29
COL7A1Q02388 SKP1-203ENST00000517625 876 ntAPPRIS P4 TSL 3 BASIC0.75□□□□□ -2.29
COL7A1Q02388 AP000756.1-201ENST00000532606 679 ntTSL 2 BASIC0.75□□□□□ -2.29
COL7A1Q02388 LINC01735-201ENST00000568112 279 ntTSL 3 BASIC0.75□□□□□ -2.29
COL7A1Q02388 RPS15AP11-201ENST00000594193 385 ntBASIC0.75□□□□□ -2.29
COL7A1Q02388 AL158032.1-201ENST00000605401 106 ntBASIC0.75□□□□□ -2.29
COL7A1Q02388 AC009229.3-201ENST00000608056 282 ntBASIC0.75□□□□□ -2.29
COL7A1Q02388 AC008669.1-201ENST00000565823 2178 ntBASIC0.75□□□□□ -2.29
COL7A1Q02388 ZNF260-205ENST00000593142 4047 ntAPPRIS P1 TSL 1 (best) BASIC0.75□□□□□ -2.29
COL7A1Q02388 TXNP7-201ENST00000406296 293 ntBASIC0.75□□□□□ -2.29
COL7A1Q02388 RPL7P18-201ENST00000478965 734 ntBASIC0.75□□□□□ -2.29
COL7A1Q02388 AP003497.1-201ENST00000528472 562 ntBASIC0.75□□□□□ -2.29
COL7A1Q02388 AC023050.2-201ENST00000544968 387 ntBASIC0.75□□□□□ -2.29
COL7A1Q02388 AC005498.1-201ENST00000592125 465 ntBASIC0.75□□□□□ -2.29
COL7A1Q02388 LINC02109-204ENST00000602801 563 ntTSL 4 BASIC0.75□□□□□ -2.29
COL7A1Q02388 ZRANB2-AS2-222ENST00000625045 1014 ntTSL 5 BASIC0.75□□□□□ -2.29
COL7A1Q02388 AL157700.1-201ENST00000561973 1432 ntBASIC0.75□□□□□ -2.29
COL7A1Q02388 TAS2R20-201ENST00000538986 1381 ntAPPRIS P1 BASIC0.75□□□□□ -2.29
COL7A1Q02388 AC138915.1-201ENST00000565427 1685 ntBASIC0.75□□□□□ -2.29
COL7A1Q02388 RNU6-30P-201ENST00000384561 107 ntBASIC0.75□□□□□ -2.29
COL7A1Q02388 RNU6ATAC4P-201ENST00000387446 126 ntBASIC0.75□□□□□ -2.29
COL7A1Q02388 ZNF788-202ENST00000397759 777 ntAPPRIS P1 TSL 5 BASIC0.75□□□□□ -2.29
COL7A1Q02388 AC092447.6-201ENST00000414578 210 ntBASIC0.75□□□□□ -2.29
COL7A1Q02388 AC099548.1-201ENST00000421443 426 ntBASIC0.75□□□□□ -2.29
COL7A1Q02388 PGBD4P6-201ENST00000421501 610 ntBASIC0.75□□□□□ -2.29
COL7A1Q02388 AL158840.1-202ENST00000425754 694 ntTSL 3 BASIC0.75□□□□□ -2.29
COL7A1Q02388 MYCBP2-AS1-202ENST00000448470 333 ntTSL 3 BASIC0.75□□□□□ -2.29
COL7A1Q02388 AC127894.1-201ENST00000548266 851 ntTSL 3 BASIC0.75□□□□□ -2.29
COL7A1Q02388 ICE2P2-201ENST00000483823 2787 ntBASIC0.75□□□□□ -2.29
COL7A1Q02388 Z82195.2-201ENST00000612348 18351 ntBASIC0.74□□□□□ -2.29
COL7A1Q02388 Y_RNA.132-201ENST00000363421 102 ntBASIC0.74□□□□□ -2.29
COL7A1Q02388 Y_RNA.280-201ENST00000364765 112 ntBASIC0.74□□□□□ -2.29
COL7A1Q02388 RNA5SP189-201ENST00000364920 115 ntBASIC0.74□□□□□ -2.29
COL7A1Q02388 RNY3-201ENST00000365484 102 ntBASIC0.74□□□□□ -2.29
COL7A1Q02388 LGI1-201ENST00000371413 1247 ntTSL 1 (best) BASIC0.74□□□□□ -2.29
COL7A1Q02388 PRELID3BP11-201ENST00000414230 479 ntBASIC0.74□□□□□ -2.29
COL7A1Q02388 RAB9AP5-201ENST00000437794 597 ntBASIC0.74□□□□□ -2.29
COL7A1Q02388 RAB9AP2-201ENST00000443911 597 ntBASIC0.74□□□□□ -2.29
COL7A1Q02388 ARL5AP2-201ENST00000444698 533 ntBASIC0.74□□□□□ -2.29
COL7A1Q02388 OR6K5P-201ENST00000447050 945 ntBASIC0.74□□□□□ -2.29
COL7A1Q02388 AL137802.1-201ENST00000452795 327 ntTSL 5 BASIC0.74□□□□□ -2.29
Retrieved 100 of 98,524 protein–RNA pairs in 100.4 ms