Protein–RNA interactions for Protein: P31274

HOXC9, Homeobox protein Hox-C9, humanhuman

Predictions only

Length 260 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXC9P31274 LINC02461-201ENST00000553211 836 ntTSL 3 BASIC3.6□□□□□ -1.83
HOXC9P31274 TIMM9-207ENST00000555930 448 ntTSL 3 BASIC3.6□□□□□ -1.83
HOXC9P31274 AC027176.1-201ENST00000560204 514 ntBASIC3.6□□□□□ -1.83
HOXC9P31274 MIR3611-201ENST00000584484 83 ntBASIC3.6□□□□□ -1.83
HOXC9P31274 AC064872.1-201ENST00000604823 1072 ntBASIC3.6□□□□□ -1.83
HOXC9P31274 TUG1_1.1-201ENST00000610654 145 ntBASIC3.6□□□□□ -1.83
HOXC9P31274 TMBIM4-213ENST00000613669 851 ntTSL 5 BASIC3.6□□□□□ -1.83
HOXC9P31274 AC010678.1-201ENST00000614118 713 ntBASIC3.6□□□□□ -1.83
HOXC9P31274 AC009878.1-201ENST00000621819 340 ntBASIC3.6□□□□□ -1.83
HOXC9P31274 AC007405.1-203ENST00000623667 932 ntTSL 5 BASIC3.6□□□□□ -1.83
HOXC9P31274 AC112204.3-201ENST00000623822 332 ntBASIC3.6□□□□□ -1.83
HOXC9P31274 OR5B3-202ENST00000641865 1046 ntAPPRIS P1 BASIC3.6□□□□□ -1.83
HOXC9P31274 SLC39A10-201ENST00000359634 5322 ntAPPRIS P1 TSL 1 (best) BASIC3.6□□□□□ -1.83
HOXC9P31274 AC066616.2-201ENST00000559334 1481 ntBASIC3.6□□□□□ -1.83
HOXC9P31274 CCDC141-202ENST00000409284 6960 ntAPPRIS P2 TSL 1 (best) BASIC3.59□□□□□ -1.83
HOXC9P31274 RICTOR-201ENST00000296782 7505 ntTSL 1 (best) BASIC3.59□□□□□ -1.83
HOXC9P31274 Y_RNA.46-201ENST00000362695 102 ntBASIC3.59□□□□□ -1.83
HOXC9P31274 C1orf189-201ENST00000368525 387 ntAPPRIS P1 TSL 1 (best) BASIC3.59□□□□□ -1.83
HOXC9P31274 RNU6-1074P-201ENST00000383995 104 ntBASIC3.59□□□□□ -1.83
HOXC9P31274 MIR181A2-201ENST00000384863 110 ntBASIC3.59□□□□□ -1.83
HOXC9P31274 TRAJ32-201ENST00000390505 66 ntAPPRIS P1 BASIC3.59□□□□□ -1.83
HOXC9P31274 HSPE1P26-201ENST00000405341 275 ntBASIC3.59□□□□□ -1.83
HOXC9P31274 AL353706.1-201ENST00000436728 494 ntBASIC3.59□□□□□ -1.83
HOXC9P31274 LINC02195-201ENST00000443373 294 ntTSL 3 BASIC3.59□□□□□ -1.83
HOXC9P31274 AP1S3-208ENST00000446015 499 ntAPPRIS ALT1 TSL 1 (best) BASIC3.59□□□□□ -1.83
HOXC9P31274 MTCO2P7-201ENST00000446518 666 ntBASIC3.59□□□□□ -1.83
HOXC9P31274 RNA5SP269-201ENST00000459032 137 ntBASIC3.59□□□□□ -1.83
HOXC9P31274 AC112204.1-201ENST00000502591 103 ntBASIC3.59□□□□□ -1.83
HOXC9P31274 KCTD9P5-201ENST00000504141 1170 ntBASIC3.59□□□□□ -1.83
HOXC9P31274 AC010210.1-203ENST00000513905 260 ntTSL 3 BASIC3.59□□□□□ -1.83
HOXC9P31274 AC096725.1-201ENST00000514266 313 ntBASIC3.59□□□□□ -1.83
HOXC9P31274 AC022447.1-201ENST00000515358 464 ntBASIC3.59□□□□□ -1.83
HOXC9P31274 SNORA70.14-201ENST00000516205 110 ntBASIC3.59□□□□□ -1.83
HOXC9P31274 RNU6-798P-201ENST00000516912 103 ntBASIC3.59□□□□□ -1.83
HOXC9P31274 RNU6-1231P-201ENST00000517185 103 ntBASIC3.59□□□□□ -1.83
HOXC9P31274 AP002453.2-201ENST00000533503 320 ntBASIC3.59□□□□□ -1.83
HOXC9P31274 HOMER1-205ENST00000535690 642 ntTSL 1 (best) BASIC3.59□□□□□ -1.83
HOXC9P31274 AL135746.1-201ENST00000554205 547 ntTSL 3 BASIC3.59□□□□□ -1.83
HOXC9P31274 AC084756.1-201ENST00000558237 606 ntTSL 5 BASIC3.59□□□□□ -1.83
HOXC9P31274 AC009101.1-201ENST00000568135 242 ntBASIC3.59□□□□□ -1.83
HOXC9P31274 AL513324.1-201ENST00000575236 632 ntTSL 5 BASIC3.59□□□□□ -1.83
HOXC9P31274 AC004223.2-201ENST00000590309 544 ntBASIC3.59□□□□□ -1.83
HOXC9P31274 SEPT7P9-203ENST00000604116 343 ntBASIC3.59□□□□□ -1.83
HOXC9P31274 AC112191.3-201ENST00000604371 277 ntBASIC3.59□□□□□ -1.83
HOXC9P31274 OR10AB1P-201ENST00000609613 938 ntBASIC3.59□□□□□ -1.83
HOXC9P31274 AC139792.2-201ENST00000624218 587 ntBASIC3.59□□□□□ -1.83
HOXC9P31274 CAPZA2-214ENST00000628758 525 ntTSL 5 BASIC3.59□□□□□ -1.83
HOXC9P31274 OR51L1-203ENST00000641819 7300 ntAPPRIS P1 BASIC3.59□□□□□ -1.83
HOXC9P31274 DST-204ENST00000361203 22431 ntAPPRIS ALT2 TSL 5 BASIC3.59□□□□□ -1.83
HOXC9P31274 DPP10-205ENST00000410059 6278 ntAPPRIS ALT2 TSL 1 (best) BASIC3.59□□□□□ -1.84
HOXC9P31274 EIF2A-201ENST00000273435 2083 ntAPPRIS ALT1 TSL 1 (best) BASIC3.58□□□□□ -1.84
HOXC9P31274 AC093831.2-201ENST00000624393 3427 ntBASIC3.58□□□□□ -1.84
HOXC9P31274 TTTY13-201ENST00000330337 659 ntTSL 1 (best) BASIC3.58□□□□□ -1.84
HOXC9P31274 RNY4P24-201ENST00000362735 96 ntBASIC3.58□□□□□ -1.84
HOXC9P31274 RNU6-1155P-201ENST00000363554 107 ntBASIC3.58□□□□□ -1.84
HOXC9P31274 RNU6-1078P-201ENST00000364522 103 ntBASIC3.58□□□□□ -1.84
HOXC9P31274 RNU4-24P-201ENST00000364565 139 ntBASIC3.58□□□□□ -1.84
HOXC9P31274 MIR135A2-201ENST00000384854 100 ntBASIC3.58□□□□□ -1.84
HOXC9P31274 MIR607-201ENST00000385241 96 ntBASIC3.58□□□□□ -1.84
HOXC9P31274 RPL21P3-201ENST00000395517 478 ntBASIC3.58□□□□□ -1.84
HOXC9P31274 MIR1183-201ENST00000408856 89 ntBASIC3.58□□□□□ -1.84
HOXC9P31274 MORF4L1P6-201ENST00000418771 268 ntBASIC3.58□□□□□ -1.84
HOXC9P31274 RPS29P6-201ENST00000438196 145 ntBASIC3.58□□□□□ -1.84
HOXC9P31274 SNORD121B-201ENST00000458838 81 ntBASIC3.58□□□□□ -1.84
HOXC9P31274 AC146507.2-201ENST00000460608 476 ntBASIC3.58□□□□□ -1.84
HOXC9P31274 HSPE1P6-201ENST00000479457 291 ntBASIC3.58□□□□□ -1.84
HOXC9P31274 KLHL6-AS1-201ENST00000491676 503 ntTSL 2 BASIC3.58□□□□□ -1.84
HOXC9P31274 AC082651.2-201ENST00000496833 166 ntBASIC3.58□□□□□ -1.84
HOXC9P31274 AC008883.2-201ENST00000505796 414 ntTSL 3 BASIC3.58□□□□□ -1.84
HOXC9P31274 RNU1-41P-201ENST00000516161 162 ntBASIC3.58□□□□□ -1.84
HOXC9P31274 RNU1-48P-201ENST00000516400 162 ntBASIC3.58□□□□□ -1.84
HOXC9P31274 AC109329.2-201ENST00000519658 482 ntBASIC3.58□□□□□ -1.84
HOXC9P31274 AP000907.2-201ENST00000530827 353 ntBASIC3.58□□□□□ -1.84
HOXC9P31274 AC092745.2-201ENST00000537764 620 ntTSL 3 BASIC3.58□□□□□ -1.84
HOXC9P31274 AP000462.3-201ENST00000545593 330 ntTSL 5 BASIC3.58□□□□□ -1.84
HOXC9P31274 AC010183.2-202ENST00000546791 382 ntTSL 3 BASIC3.58□□□□□ -1.84
HOXC9P31274 AC007513.1-201ENST00000548740 379 ntTSL 3 BASIC3.58□□□□□ -1.84
HOXC9P31274 AC073591.1-201ENST00000552736 597 ntTSL 3 BASIC3.58□□□□□ -1.84
HOXC9P31274 AC024909.2-201ENST00000553035 286 ntBASIC3.58□□□□□ -1.84
HOXC9P31274 ALDH3A2-208ENST00000571163 590 ntTSL 5 BASIC3.58□□□□□ -1.84
HOXC9P31274 AC006254.3-201ENST00000603353 884 ntBASIC3.58□□□□□ -1.84
HOXC9P31274 AL158211.4-201ENST00000606988 584 ntBASIC3.58□□□□□ -1.84
HOXC9P31274 AC097717.1-249ENST00000608040 401 ntTSL 5 BASIC3.58□□□□□ -1.84
HOXC9P31274 Hammerhead_HH10.1-201ENST00000620658 125 ntBASIC3.58□□□□□ -1.84
HOXC9P31274 AC068137.4-201ENST00000638485 296 ntBASIC3.58□□□□□ -1.84
HOXC9P31274 AC009487.2-201ENST00000420969 6821 ntBASIC3.58□□□□□ -1.84
HOXC9P31274 CLOCK-201ENST00000309964 10304 ntAPPRIS P1 TSL 1 (best) BASIC3.58□□□□□ -1.84
HOXC9P31274 AC011460.1-201ENST00000636268 1834 ntBASIC3.58□□□□□ -1.84
HOXC9P31274 THOC2-201ENST00000245838 5609 ntAPPRIS P1 TSL 5 BASIC3.58□□□□□ -1.84
HOXC9P31274 ZNF322-205ENST00000471278 2675 ntAPPRIS P1 TSL 5 BASIC3.57□□□□□ -1.84
HOXC9P31274 SLC8A1-207ENST00000406785 20987 ntTSL 1 (best) BASIC3.57□□□□□ -1.84
HOXC9P31274 ERBIN-214ENST00000511297 4257 ntAPPRIS ALT1 TSL 5 BASIC3.57□□□□□ -1.84
HOXC9P31274 AP001486.2-201ENST00000561652 5113 ntBASIC3.57□□□□□ -1.84
HOXC9P31274 MIR148B-201ENST00000362252 99 ntBASIC3.57□□□□□ -1.84
HOXC9P31274 SNORA7.2-201ENST00000364446 145 ntBASIC3.57□□□□□ -1.84
HOXC9P31274 Y_RNA.359-201ENST00000365498 102 ntBASIC3.57□□□□□ -1.84
HOXC9P31274 SNORA40.3-201ENST00000390964 122 ntBASIC3.57□□□□□ -1.84
HOXC9P31274 HMGN1P14-201ENST00000412459 517 ntBASIC3.57□□□□□ -1.84
HOXC9P31274 BMS1P22-201ENST00000414726 313 ntBASIC3.57□□□□□ -1.84
HOXC9P31274 USP9YP13-201ENST00000417797 480 ntBASIC3.57□□□□□ -1.84
Retrieved 100 of 98,524 protein–RNA pairs in 97.5 ms