Protein–RNA interactions for Protein: O43365

HOXA3, Homeobox protein Hox-A3, humanhuman

Predicted RBP Predictions only

Length 443 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXA3O43365 RN7SL517P-201ENST00000462240 305 ntBASIC3.8□□□□□ -1.8
HOXA3O43365 AC108860.1-201ENST00000484521 383 ntBASIC3.8□□□□□ -1.8
HOXA3O43365 AL049874.1-201ENST00000489560 388 ntBASIC3.8□□□□□ -1.8
HOXA3O43365 AC097372.3-201ENST00000503593 522 ntTSL 3 BASIC3.8□□□□□ -1.8
HOXA3O43365 AC096711.1-201ENST00000510967 347 ntTSL 5 BASIC3.8□□□□□ -1.8
HOXA3O43365 SNORA25.10-201ENST00000515926 124 ntBASIC3.8□□□□□ -1.8
HOXA3O43365 Y_RNA.661-201ENST00000516003 99 ntBASIC3.8□□□□□ -1.8
HOXA3O43365 AC069113.1-201ENST00000517763 267 ntBASIC3.8□□□□□ -1.8
HOXA3O43365 KIRREL3-AS2-201ENST00000532988 492 ntTSL 1 (best) BASIC3.8□□□□□ -1.8
HOXA3O43365 AC055720.1-201ENST00000539552 475 ntTSL 5 BASIC3.8□□□□□ -1.8
HOXA3O43365 MIR4680-201ENST00000580906 66 ntBASIC3.8□□□□□ -1.8
HOXA3O43365 MIR548AC-201ENST00000585049 88 ntBASIC3.8□□□□□ -1.8
HOXA3O43365 AL121655.1-201ENST00000605811 308 ntBASIC3.8□□□□□ -1.8
HOXA3O43365 RNU6-85P-201ENST00000605989 107 ntBASIC3.8□□□□□ -1.8
HOXA3O43365 ATG5-207ENST00000613993 733 ntTSL 1 (best) BASIC3.8□□□□□ -1.8
HOXA3O43365 7SK.10-201ENST00000621414 298 ntBASIC3.8□□□□□ -1.8
HOXA3O43365 RNF123-214ENST00000629802 207 ntTSL 5 BASIC3.8□□□□□ -1.8
HOXA3O43365 Z73965.1-201ENST00000623412 2297 ntBASIC3.8□□□□□ -1.8
HOXA3O43365 SYCP1-210ENST00000618516 3109 ntAPPRIS P1 TSL 1 (best) BASIC3.8□□□□□ -1.8
HOXA3O43365 PPIG-201ENST00000260970 6368 ntAPPRIS P1 TSL 1 (best) BASIC3.8□□□□□ -1.8
HOXA3O43365 AL356489.2-201ENST00000566968 3528 ntBASIC3.8□□□□□ -1.8
HOXA3O43365 PNPT1P2-201ENST00000456768 2050 ntBASIC3.8□□□□□ -1.8
HOXA3O43365 RC3H1-202ENST00000367694 3775 ntAPPRIS ALT1 TSL 2 BASIC3.8□□□□□ -1.8
HOXA3O43365 TMEM106B-201ENST00000396667 12539 ntAPPRIS P1 TSL 1 (best) BASIC3.8□□□□□ -1.8
HOXA3O43365 PTRH2-203ENST00000470557 4114 ntAPPRIS P3 BASIC3.8□□□□□ -1.8
HOXA3O43365 CHD9-221ENST00000615216 10603 ntTSL 5 BASIC3.8□□□□□ -1.8
HOXA3O43365 OR2L13-201ENST00000358120 1942 ntAPPRIS P1 BASIC3.8□□□□□ -1.8
HOXA3O43365 AC087190.4-201ENST00000574616 8334 ntBASIC3.8□□□□□ -1.8
HOXA3O43365 LRRC19-201ENST00000380055 3609 ntAPPRIS P1 TSL 1 (best) BASIC3.8□□□□□ -1.8
HOXA3O43365 MBD5-212ENST00000627651 5610 ntTSL 5 BASIC3.79□□□□□ -1.8
HOXA3O43365 MIR99AHG-219ENST00000619222 3476 ntTSL 2 BASIC3.79□□□□□ -1.8
HOXA3O43365 AC009643.2-201ENST00000603543 1448 ntBASIC3.79□□□□□ -1.8
HOXA3O43365 TBC1D15-210ENST00000485960 2489 ntAPPRIS P1 TSL 1 (best) BASIC3.79□□□□□ -1.8
HOXA3O43365 CNOT1-201ENST00000317147 8471 ntAPPRIS P3 TSL 1 (best) BASIC3.79□□□□□ -1.8
HOXA3O43365 OR10D3-203ENST00000641546 3566 ntAPPRIS P1 BASIC3.79□□□□□ -1.8
HOXA3O43365 RNA5SP447-201ENST00000363749 119 ntBASIC3.79□□□□□ -1.8
HOXA3O43365 RNU6-512P-201ENST00000364438 103 ntBASIC3.79□□□□□ -1.8
HOXA3O43365 RNU6-1329P-201ENST00000365664 107 ntBASIC3.79□□□□□ -1.8
HOXA3O43365 RNU6-331P-201ENST00000384724 107 ntBASIC3.79□□□□□ -1.8
HOXA3O43365 RNU6-985P-201ENST00000410182 104 ntBASIC3.79□□□□□ -1.8
HOXA3O43365 AL158837.1-201ENST00000417644 452 ntTSL 2 BASIC3.79□□□□□ -1.8
HOXA3O43365 AC140479.3-201ENST00000418944 1126 ntBASIC3.79□□□□□ -1.8
HOXA3O43365 UBE2V1P4-201ENST00000425374 344 ntBASIC3.79□□□□□ -1.8
HOXA3O43365 AL592045.1-201ENST00000429867 352 ntBASIC3.79□□□□□ -1.8
HOXA3O43365 AC073587.1-201ENST00000447093 876 ntBASIC3.79□□□□□ -1.8
HOXA3O43365 AL591504.1-201ENST00000450681 414 ntTSL 3 BASIC3.79□□□□□ -1.8
HOXA3O43365 AC079168.2-201ENST00000453977 416 ntBASIC3.79□□□□□ -1.8
HOXA3O43365 LINC01210-201ENST00000465283 625 ntTSL 2 BASIC3.79□□□□□ -1.8
HOXA3O43365 RPL5P30-201ENST00000465511 891 ntBASIC3.79□□□□□ -1.8
HOXA3O43365 AC022795.1-201ENST00000473808 480 ntBASIC3.79□□□□□ -1.8
HOXA3O43365 AC093840.1-201ENST00000511599 336 ntBASIC3.79□□□□□ -1.8
HOXA3O43365 AC025475.1-201ENST00000512939 487 ntTSL 3 BASIC3.79□□□□□ -1.8
HOXA3O43365 RNU6-143P-201ENST00000516942 93 ntBASIC3.79□□□□□ -1.8
HOXA3O43365 RNA5SP471-201ENST00000516971 106 ntBASIC3.79□□□□□ -1.8
HOXA3O43365 AC022882.1-201ENST00000532142 501 ntBASIC3.79□□□□□ -1.8
HOXA3O43365 LINC00644-201ENST00000555156 295 ntTSL 2 BASIC3.79□□□□□ -1.8
HOXA3O43365 AC093249.4-201ENST00000564755 259 ntBASIC3.79□□□□□ -1.8
HOXA3O43365 AC079070.1-201ENST00000578740 555 ntTSL 2 BASIC3.79□□□□□ -1.8
HOXA3O43365 BNIP3P16-201ENST00000589779 534 ntBASIC3.79□□□□□ -1.8
HOXA3O43365 AC011494.1-201ENST00000596454 237 ntBASIC3.79□□□□□ -1.8
HOXA3O43365 AL391422.2-201ENST00000602854 361 ntTSL 2 BASIC3.79□□□□□ -1.8
HOXA3O43365 NUTF2P8-201ENST00000604593 363 ntBASIC3.79□□□□□ -1.8
HOXA3O43365 LINC02112-205ENST00000606744 236 ntTSL 1 (best) BASIC3.79□□□□□ -1.8
HOXA3O43365 Z98200.1-201ENST00000607298 470 ntBASIC3.79□□□□□ -1.8
HOXA3O43365 SNORD91B-202ENST00000608459 222 ntBASIC3.79□□□□□ -1.8
HOXA3O43365 AC007485.1-201ENST00000616755 206 ntBASIC3.79□□□□□ -1.8
HOXA3O43365 AL158196.1-201ENST00000616786 434 ntBASIC3.79□□□□□ -1.8
HOXA3O43365 HOXA11-AS1_4.1-201ENST00000620901 233 ntBASIC3.79□□□□□ -1.8
HOXA3O43365 AL512643.1-201ENST00000635735 524 ntBASIC3.79□□□□□ -1.8
HOXA3O43365 Z99571.1-201ENST00000636677 394 ntBASIC3.79□□□□□ -1.8
HOXA3O43365 YWHAZ-211ENST00000457309 3007 ntAPPRIS P1 TSL 2 BASIC3.79□□□□□ -1.8
HOXA3O43365 RGS4-202ENST00000367908 2606 ntTSL 2 BASIC3.79□□□□□ -1.8
HOXA3O43365 STAG2-203ENST00000371145 4393 ntAPPRIS ALT1 TSL 1 (best) BASIC3.79□□□□□ -1.8
HOXA3O43365 AC103993.1-201ENST00000521500 1584 ntTSL 5 BASIC3.79□□□□□ -1.8
HOXA3O43365 EYA4-202ENST00000355286 4317 ntAPPRIS ALT1 TSL 1 (best) BASIC3.79□□□□□ -1.8
HOXA3O43365 AKT3-201ENST00000263826 7081 ntAPPRIS P1 TSL 1 (best) BASIC3.79□□□□□ -1.8
HOXA3O43365 AC025031.4-201ENST00000621248 3271 ntBASIC3.79□□□□□ -1.8
HOXA3O43365 FAP-214ENST00000627638 2569 ntAPPRIS ALT1 TSL 5 BASIC3.79□□□□□ -1.8
HOXA3O43365 AL158064.1-201ENST00000627044 2242 ntTSL 4 BASIC3.79□□□□□ -1.8
HOXA3O43365 OR8H2-203ENST00000641311 3092 ntAPPRIS P2 BASIC3.79□□□□□ -1.8
HOXA3O43365 OR4G2P-202ENST00000641004 1759 ntBASIC3.79□□□□□ -1.8
HOXA3O43365 CFAP70-203ENST00000355577 3691 ntTSL 5 BASIC3.79□□□□□ -1.8
HOXA3O43365 GPR85-201ENST00000297146 5079 ntAPPRIS P1 TSL 1 (best) BASIC3.78□□□□□ -1.8
HOXA3O43365 NLRP11-202ENST00000589824 3231 ntAPPRIS ALT2 TSL 5 BASIC3.78□□□□□ -1.8
HOXA3O43365 MTND5P1-201ENST00000445440 1375 ntBASIC3.78□□□□□ -1.8
HOXA3O43365 AL136164.3-201ENST00000624429 3978 ntBASIC3.78□□□□□ -1.8
HOXA3O43365 OR10Z1-202ENST00000641002 6323 ntAPPRIS P1 BASIC3.78□□□□□ -1.8
HOXA3O43365 SLC9C1-201ENST00000305815 4172 ntAPPRIS P3 TSL 2 BASIC3.78□□□□□ -1.8
HOXA3O43365 DEFB108B-201ENST00000328698 222 ntAPPRIS P1 TSL 1 (best) BASIC3.78□□□□□ -1.8
HOXA3O43365 DEFB108F-201ENST00000344638 222 ntBASIC3.78□□□□□ -1.8
HOXA3O43365 Y_RNA.2-201ENST00000362330 96 ntBASIC3.78□□□□□ -1.8
HOXA3O43365 RNU6-490P-201ENST00000362985 107 ntBASIC3.78□□□□□ -1.8
HOXA3O43365 RNU4-44P-201ENST00000363050 141 ntBASIC3.78□□□□□ -1.8
HOXA3O43365 RNU6-574P-201ENST00000384265 107 ntBASIC3.78□□□□□ -1.8
HOXA3O43365 MIR514A1-201ENST00000385133 98 ntBASIC3.78□□□□□ -1.8
HOXA3O43365 RNU6-607P-201ENST00000411283 108 ntBASIC3.78□□□□□ -1.8
HOXA3O43365 AC083867.1-201ENST00000413567 457 ntTSL 3 BASIC3.78□□□□□ -1.8
HOXA3O43365 ELF3-AS1-201ENST00000415582 500 ntTSL 2 BASIC3.78□□□□□ -1.8
HOXA3O43365 AL136368.1-201ENST00000416249 401 ntTSL 2 BASIC3.78□□□□□ -1.8
HOXA3O43365 LINC01344-201ENST00000420760 261 ntTSL 3 BASIC3.78□□□□□ -1.8
Retrieved 100 of 98,524 protein–RNA pairs in 132.1 ms