Protein–RNA interactions for Protein: O15551

CLDN3, Claudin-3, humanhuman

Predictions only

Length 220 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLDN3O15551 AC022447.3-201ENST00000506865 495 ntBASIC2.8□□□□□ -1.96
CLDN3O15551 TEMN3-AS1-201ENST00000510211 401 ntTSL 3 BASIC2.8□□□□□ -1.96
CLDN3O15551 AC098868.1-201ENST00000512628 624 ntTSL 2 BASIC2.8□□□□□ -1.96
CLDN3O15551 AC093766.1-202ENST00000513400 718 ntTSL 3 BASIC2.8□□□□□ -1.96
CLDN3O15551 RNU6-390P-201ENST00000516259 103 ntBASIC2.8□□□□□ -1.96
CLDN3O15551 ZFAND1-217ENST00000521895 885 ntTSL 3 BASIC2.8□□□□□ -1.96
CLDN3O15551 ZFPM2-AS1-207ENST00000524045 987 ntTSL 3 BASIC2.8□□□□□ -1.96
CLDN3O15551 BLOC1S6-207ENST00000565216 573 ntTSL 3 BASIC2.8□□□□□ -1.96
CLDN3O15551 AC060771.1-201ENST00000582031 164 ntBASIC2.8□□□□□ -1.96
CLDN3O15551 AC005498.1-201ENST00000592125 465 ntBASIC2.8□□□□□ -1.96
CLDN3O15551 NRBF2P5-201ENST00000603087 788 ntBASIC2.8□□□□□ -1.96
CLDN3O15551 RNU4-5P-201ENST00000607255 135 ntBASIC2.8□□□□□ -1.96
CLDN3O15551 ANKRD36C-207ENST00000612359 650 ntTSL 1 (best) BASIC2.8□□□□□ -1.96
CLDN3O15551 AC093838.1-201ENST00000613014 469 ntBASIC2.8□□□□□ -1.96
CLDN3O15551 AC006386.1-201ENST00000619436 415 ntBASIC2.8□□□□□ -1.96
CLDN3O15551 AP003399.1-201ENST00000637534 361 ntBASIC2.8□□□□□ -1.96
CLDN3O15551 TAB3-205ENST00000378933 6671 ntAPPRIS P1 TSL 1 (best) BASIC2.8□□□□□ -1.96
CLDN3O15551 OR5V1-217ENST00000641768 2763 ntAPPRIS P1 BASIC2.8□□□□□ -1.96
CLDN3O15551 LUZP4-201ENST00000371920 1701 ntAPPRIS P2 TSL 1 (best) BASIC2.79□□□□□ -1.96
CLDN3O15551 CD80-202ENST00000383669 771 ntTSL 1 (best) BASIC2.79□□□□□ -1.96
CLDN3O15551 Y_RNA.500-201ENST00000384466 111 ntBASIC2.79□□□□□ -1.96
CLDN3O15551 RNU6-140P-201ENST00000384566 108 ntBASIC2.79□□□□□ -1.96
CLDN3O15551 RNU6-636P-201ENST00000384598 107 ntBASIC2.79□□□□□ -1.96
CLDN3O15551 MIR592-201ENST00000384959 97 ntBASIC2.79□□□□□ -1.96
CLDN3O15551 MIR27B-201ENST00000385129 97 ntBASIC2.79□□□□□ -1.96
CLDN3O15551 RNA5SP210-201ENST00000391034 120 ntBASIC2.79□□□□□ -1.96
CLDN3O15551 RNU2-33P-201ENST00000410344 192 ntBASIC2.79□□□□□ -1.96
CLDN3O15551 RNU2-25P-201ENST00000411041 191 ntBASIC2.79□□□□□ -1.96
CLDN3O15551 MTCO1P17-201ENST00000411522 491 ntBASIC2.79□□□□□ -1.96
CLDN3O15551 FGF12-AS1-201ENST00000414920 580 ntTSL 4 BASIC2.79□□□□□ -1.96
CLDN3O15551 USP9YP24-201ENST00000434374 697 ntBASIC2.79□□□□□ -1.96
CLDN3O15551 USP9YP17-201ENST00000444617 696 ntBASIC2.79□□□□□ -1.96
CLDN3O15551 AC099342.1-201ENST00000446399 1124 ntTSL 3 BASIC2.79□□□□□ -1.96
CLDN3O15551 TPT1P14-201ENST00000448018 505 ntBASIC2.79□□□□□ -1.96
CLDN3O15551 CACYBPP2-201ENST00000453625 678 ntBASIC2.79□□□□□ -1.96
CLDN3O15551 GRM7-AS3-208ENST00000455623 947 ntTSL 3 BASIC2.79□□□□□ -1.96
CLDN3O15551 RPS20P22-201ENST00000473700 357 ntBASIC2.79□□□□□ -1.96
CLDN3O15551 RPL7P18-201ENST00000478965 734 ntBASIC2.79□□□□□ -1.96
CLDN3O15551 RPL23AP70-201ENST00000483361 460 ntBASIC2.79□□□□□ -1.96
CLDN3O15551 AHI1-208ENST00000488690 712 ntTSL 5 BASIC2.79□□□□□ -1.96
CLDN3O15551 RPS15AP36-201ENST00000492022 382 ntBASIC2.79□□□□□ -1.96
CLDN3O15551 AC134050.1-201ENST00000495088 933 ntBASIC2.79□□□□□ -1.96
CLDN3O15551 AC098799.2-201ENST00000509466 868 ntBASIC2.79□□□□□ -1.96
CLDN3O15551 MRPS36P2-201ENST00000512569 299 ntBASIC2.79□□□□□ -1.96
CLDN3O15551 MRPL42-204ENST00000548545 692 ntAPPRIS ALT1 TSL 2 BASIC2.79□□□□□ -1.96
CLDN3O15551 AL391261.3-201ENST00000557194 520 ntBASIC2.79□□□□□ -1.96
CLDN3O15551 AC087465.1-201ENST00000560574 245 ntBASIC2.79□□□□□ -1.96
CLDN3O15551 LINC01735-201ENST00000568112 279 ntTSL 3 BASIC2.79□□□□□ -1.96
CLDN3O15551 HMGN2P15-201ENST00000585707 270 ntBASIC2.79□□□□□ -1.96
CLDN3O15551 AC080013.3-201ENST00000606839 578 ntBASIC2.79□□□□□ -1.96
CLDN3O15551 OR8H2-202ENST00000618136 1038 ntAPPRIS ALT1 BASIC2.79□□□□□ -1.96
CLDN3O15551 AC010608.3-201ENST00000625048 527 ntBASIC2.79□□□□□ -1.96
CLDN3O15551 PCMTD1P7-201ENST00000634506 357 ntBASIC2.79□□□□□ -1.96
CLDN3O15551 MTND1P37-201ENST00000636562 264 ntBASIC2.79□□□□□ -1.96
CLDN3O15551 TAB2-201ENST00000367456 4553 ntAPPRIS P1 TSL 5 BASIC2.79□□□□□ -1.96
CLDN3O15551 ELF1-201ENST00000239882 3566 ntAPPRIS P1 TSL 1 (best) BASIC2.79□□□□□ -1.96
CLDN3O15551 GPBP1-201ENST00000264779 1786 ntAPPRIS ALT2 TSL 1 (best) BASIC2.79□□□□□ -1.96
CLDN3O15551 AC092447.7-201ENST00000422212 1621 ntBASIC2.79□□□□□ -1.96
CLDN3O15551 OR4M1-202ENST00000641200 3493 ntAPPRIS P1 BASIC2.78□□□□□ -1.96
CLDN3O15551 RNU6-223P-201ENST00000362830 107 ntBASIC2.78□□□□□ -1.96
CLDN3O15551 RNU4-92P-201ENST00000363783 136 ntBASIC2.78□□□□□ -1.96
CLDN3O15551 AL513331.1-201ENST00000411908 397 ntBASIC2.78□□□□□ -1.96
CLDN3O15551 AL451054.2-201ENST00000420896 202 ntBASIC2.78□□□□□ -1.96
CLDN3O15551 NANOGP5-201ENST00000424456 877 ntBASIC2.78□□□□□ -1.96
CLDN3O15551 AC114808.2-201ENST00000428335 536 ntTSL 4 BASIC2.78□□□□□ -1.96
CLDN3O15551 GTF2IP20-201ENST00000431663 360 ntBASIC2.78□□□□□ -1.96
CLDN3O15551 AL135923.2-201ENST00000435444 501 ntTSL 2 BASIC2.78□□□□□ -1.96
CLDN3O15551 MTND3P1-201ENST00000441336 220 ntBASIC2.78□□□□□ -1.96
CLDN3O15551 FGF7P5-201ENST00000441829 291 ntBASIC2.78□□□□□ -1.96
CLDN3O15551 RPS3P1-201ENST00000456781 192 ntBASIC2.78□□□□□ -1.96
CLDN3O15551 AC034222.1-201ENST00000494052 532 ntBASIC2.78□□□□□ -1.96
CLDN3O15551 SEM1P1-201ENST00000506694 209 ntBASIC2.78□□□□□ -1.96
CLDN3O15551 AC034223.1-201ENST00000511054 599 ntTSL 3 BASIC2.78□□□□□ -1.96
CLDN3O15551 RNA5SP148-201ENST00000516527 94 ntBASIC2.78□□□□□ -1.96
CLDN3O15551 RRAS2-210ENST00000534746 993 ntTSL 2 BASIC2.78□□□□□ -1.96
CLDN3O15551 LINC02384-205ENST00000539404 785 ntTSL 3 BASIC2.78□□□□□ -1.96
CLDN3O15551 LINC02274-201ENST00000555539 1174 ntTSL 1 (best) BASIC2.78□□□□□ -1.96
CLDN3O15551 TMF1P1-201ENST00000576058 373 ntBASIC2.78□□□□□ -1.96
CLDN3O15551 AC103810.1-201ENST00000579873 453 ntBASIC2.78□□□□□ -1.96
CLDN3O15551 AC022662.1-201ENST00000580252 331 ntBASIC2.78□□□□□ -1.96
CLDN3O15551 AC091057.3-201ENST00000602684 733 ntBASIC2.78□□□□□ -1.96
CLDN3O15551 AL596327.1-201ENST00000603629 213 ntBASIC2.78□□□□□ -1.96
CLDN3O15551 MTND4LP5-201ENST00000605152 292 ntBASIC2.78□□□□□ -1.96
CLDN3O15551 AC024560.3-201ENST00000608482 349 ntBASIC2.78□□□□□ -1.96
CLDN3O15551 AC159540.2-206ENST00000619371 355 ntTSL 3 BASIC2.78□□□□□ -1.96
CLDN3O15551 AC009902.3-201ENST00000606235 2172 ntBASIC2.78□□□□□ -1.96
CLDN3O15551 SENP7-205ENST00000394091 4434 ntAPPRIS ALT2 TSL 1 (best) BASIC2.77□□□□□ -1.97
CLDN3O15551 TMPRSS11A-201ENST00000334830 3054 ntAPPRIS P3 TSL 2 BASIC2.77□□□□□ -1.97
CLDN3O15551 KCNIP4-207ENST00000509207 1301 ntTSL 1 (best) BASIC2.77□□□□□ -1.97
CLDN3O15551 AP000776.1-201ENST00000530032 1663 ntBASIC2.77□□□□□ -1.97
CLDN3O15551 MCMDC2-201ENST00000313616 2043 ntTSL 2 BASIC2.77□□□□□ -1.97
CLDN3O15551 STATH-202ENST00000381060 534 ntTSL 1 (best) BASIC2.77□□□□□ -1.97
CLDN3O15551 MIR627-201ENST00000384979 97 ntBASIC2.77□□□□□ -1.97
CLDN3O15551 RNU6-1242P-201ENST00000391052 103 ntBASIC2.77□□□□□ -1.97
CLDN3O15551 HMGN2P35-201ENST00000412164 270 ntBASIC2.77□□□□□ -1.97
CLDN3O15551 AFDN-AS1-202ENST00000417244 182 ntTSL 2 BASIC2.77□□□□□ -1.97
CLDN3O15551 AL358075.3-201ENST00000426289 226 ntBASIC2.77□□□□□ -1.97
CLDN3O15551 MACC1-AS1-201ENST00000439285 639 ntTSL 3 BASIC2.77□□□□□ -1.97
CLDN3O15551 AC093579.1-201ENST00000439455 352 ntTSL 2 BASIC2.77□□□□□ -1.97
CLDN3O15551 AP000542.1-201ENST00000448473 371 ntBASIC2.77□□□□□ -1.97
Retrieved 100 of 98,524 protein–RNA pairs in 97.5 ms