Protein–RNA interactions for Protein: Q9UK41

VPS28, Vacuolar protein sorting-associated protein 28 homolog, humanhuman

Predictions only

Length 221 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28Q9UK41 DSTNP2-201ENST00000504533 515 ntBASIC3.4□□□□□ -1.87
VPS28Q9UK41 AC107934.1-201ENST00000522215 217 ntBASIC3.4□□□□□ -1.87
VPS28Q9UK41 MS4A4E-206ENST00000528394 555 ntTSL 1 (best) BASIC3.4□□□□□ -1.87
VPS28Q9UK41 AC091564.4-201ENST00000533934 2194 ntBASIC3.4□□□□□ -1.87
VPS28Q9UK41 PCED1B-AS1-208ENST00000551898 359 ntTSL 3 BASIC3.4□□□□□ -1.87
VPS28Q9UK41 LINC01146-208ENST00000557355 548 ntTSL 4 BASIC3.4□□□□□ -1.87
VPS28Q9UK41 LINC01894-201ENST00000580984 487 ntTSL 2 BASIC3.4□□□□□ -1.87
VPS28Q9UK41 AC091691.2-201ENST00000581940 567 ntTSL 4 BASIC3.4□□□□□ -1.87
VPS28Q9UK41 AC002546.2-201ENST00000585537 584 ntTSL 3 BASIC3.4□□□□□ -1.87
VPS28Q9UK41 AC022150.3-201ENST00000599143 880 ntTSL 5 BASIC3.4□□□□□ -1.87
VPS28Q9UK41 DPPA3P3-201ENST00000603842 430 ntBASIC3.4□□□□□ -1.87
VPS28Q9UK41 AC112191.3-201ENST00000604371 277 ntBASIC3.4□□□□□ -1.87
VPS28Q9UK41 ACYP2-208ENST00000606865 674 ntTSL 5 BASIC3.4□□□□□ -1.87
VPS28Q9UK41 AL031775.1-201ENST00000607014 887 ntBASIC3.4□□□□□ -1.87
VPS28Q9UK41 AC239868.4-201ENST00000608318 671 ntBASIC3.4□□□□□ -1.87
VPS28Q9UK41 BX664608.1-201ENST00000610519 487 ntBASIC3.4□□□□□ -1.87
VPS28Q9UK41 AL161629.2-201ENST00000615347 275 ntBASIC3.4□□□□□ -1.87
VPS28Q9UK41 AC092140.2-201ENST00000618027 521 ntBASIC3.4□□□□□ -1.87
VPS28Q9UK41 AC073476.4-201ENST00000628409 72 ntBASIC3.4□□□□□ -1.87
VPS28Q9UK41 SPEF2-203ENST00000440995 5964 ntAPPRIS ALT2 TSL 5 BASIC3.4□□□□□ -1.87
VPS28Q9UK41 LRRTM2-201ENST00000274711 6017 ntAPPRIS P1 TSL 1 (best) BASIC3.4□□□□□ -1.87
VPS28Q9UK41 RAPGEF6-210ENST00000512052 3535 ntTSL 2 BASIC3.4□□□□□ -1.87
VPS28Q9UK41 SUGT1-201ENST00000310528 14131 ntAPPRIS P3 TSL 1 (best) BASIC3.39□□□□□ -1.87
VPS28Q9UK41 MBNL3-204ENST00000370853 2661 ntAPPRIS P4 TSL 1 (best) BASIC3.39□□□□□ -1.87
VPS28Q9UK41 OR51L1-203ENST00000641819 7300 ntAPPRIS P1 BASIC3.39□□□□□ -1.87
VPS28Q9UK41 OR5I1-201ENST00000301532 945 ntAPPRIS P1 BASIC3.39□□□□□ -1.87
VPS28Q9UK41 HMGB1-201ENST00000326004 821 ntTSL 3 BASIC3.39□□□□□ -1.87
VPS28Q9UK41 RNU6-1027P-201ENST00000383998 107 ntBASIC3.39□□□□□ -1.87
VPS28Q9UK41 RNU6-140P-201ENST00000384566 108 ntBASIC3.39□□□□□ -1.87
VPS28Q9UK41 SNORA11.1-201ENST00000408133 129 ntBASIC3.39□□□□□ -1.87
VPS28Q9UK41 AC099548.1-201ENST00000421443 426 ntBASIC3.39□□□□□ -1.87
VPS28Q9UK41 AC019097.1-201ENST00000424783 735 ntBASIC3.39□□□□□ -1.87
VPS28Q9UK41 AL356583.2-201ENST00000426536 280 ntBASIC3.39□□□□□ -1.87
VPS28Q9UK41 AC129850.1-201ENST00000436203 508 ntBASIC3.39□□□□□ -1.87
VPS28Q9UK41 ISCA1P2-201ENST00000438679 421 ntBASIC3.39□□□□□ -1.87
VPS28Q9UK41 LINC00278-202ENST00000444263 587 ntTSL 3 BASIC3.39□□□□□ -1.87
VPS28Q9UK41 AC005008.2-202ENST00000447776 439 ntTSL 3 BASIC3.39□□□□□ -1.87
VPS28Q9UK41 MTND1P12-201ENST00000455231 147 ntBASIC3.39□□□□□ -1.87
VPS28Q9UK41 RPL37P6-201ENST00000460682 294 ntBASIC3.39□□□□□ -1.87
VPS28Q9UK41 AC087588.1-201ENST00000462203 316 ntBASIC3.39□□□□□ -1.87
VPS28Q9UK41 RN7SL807P-201ENST00000470923 297 ntBASIC3.39□□□□□ -1.87
VPS28Q9UK41 AP002075.1-201ENST00000505091 603 ntTSL 3 BASIC3.39□□□□□ -1.87
VPS28Q9UK41 AC110794.1-201ENST00000505816 425 ntBASIC3.39□□□□□ -1.87
VPS28Q9UK41 SNORA64.4-201ENST00000516632 81 ntBASIC3.39□□□□□ -1.87
VPS28Q9UK41 SNORA31.21-201ENST00000517180 77 ntBASIC3.39□□□□□ -1.87
VPS28Q9UK41 AC007834.2-201ENST00000536310 343 ntBASIC3.39□□□□□ -1.87
VPS28Q9UK41 AC096558.2-201ENST00000546678 506 ntTSL 3 BASIC3.39□□□□□ -1.87
VPS28Q9UK41 LINC02164-201ENST00000566684 272 ntTSL 3 BASIC3.39□□□□□ -1.87
VPS28Q9UK41 AC068135.2-201ENST00000569293 1028 ntBASIC3.39□□□□□ -1.87
VPS28Q9UK41 AC098617.1-215ENST00000594798 1152 ntTSL 5 BASIC3.39□□□□□ -1.87
VPS28Q9UK41 AF131215.7-201ENST00000602443 707 ntBASIC3.39□□□□□ -1.87
VPS28Q9UK41 AC099778.2-201ENST00000610904 211 ntBASIC3.39□□□□□ -1.87
VPS28Q9UK41 AC009878.1-201ENST00000621819 340 ntBASIC3.39□□□□□ -1.87
VPS28Q9UK41 AC104971.4-201ENST00000622763 249 ntTSL 5 BASIC3.39□□□□□ -1.87
VPS28Q9UK41 AC078883.4-201ENST00000623218 367 ntBASIC3.39□□□□□ -1.87
VPS28Q9UK41 AC091953.2-201ENST00000623979 160 ntBASIC3.39□□□□□ -1.87
VPS28Q9UK41 POSTN-209ENST00000541179 3214 ntAPPRIS ALT2 TSL 1 (best) BASIC3.39□□□□□ -1.87
VPS28Q9UK41 ANKRD20A17P-201ENST00000511745 1330 ntBASIC3.39□□□□□ -1.87
VPS28Q9UK41 HTR2B-201ENST00000258400 2246 ntAPPRIS P1 TSL 1 (best) BASIC3.39□□□□□ -1.87
VPS28Q9UK41 GTPBP8-205ENST00000473129 1518 ntTSL 2 BASIC3.39□□□□□ -1.87
VPS28Q9UK41 AC073346.2-201ENST00000624724 2058 ntBASIC3.39□□□□□ -1.87
VPS28Q9UK41 PPIP5K2-203ENST00000414217 5842 ntAPPRIS P3 TSL 1 (best) BASIC3.38□□□□□ -1.87
VPS28Q9UK41 AL365440.2-201ENST00000419738 2597 ntTSL 2 BASIC3.38□□□□□ -1.87
VPS28Q9UK41 MS4A5-201ENST00000300190 722 ntAPPRIS P1 TSL 1 (best) BASIC3.38□□□□□ -1.87
VPS28Q9UK41 OR1S2-201ENST00000302592 978 ntBASIC3.38□□□□□ -1.87
VPS28Q9UK41 RNA5SP139-201ENST00000364340 117 ntBASIC3.38□□□□□ -1.87
VPS28Q9UK41 U3.11-201ENST00000364476 212 ntBASIC3.38□□□□□ -1.87
VPS28Q9UK41 MT-TH-201ENST00000387441 69 ntBASIC3.38□□□□□ -1.87
VPS28Q9UK41 NDUFS5P1-201ENST00000405668 289 ntBASIC3.38□□□□□ -1.87
VPS28Q9UK41 BTF3L4P3-201ENST00000418879 476 ntBASIC3.38□□□□□ -1.87
VPS28Q9UK41 AC114808.2-201ENST00000428335 536 ntTSL 4 BASIC3.38□□□□□ -1.87
VPS28Q9UK41 LINC01688-201ENST00000435492 259 ntTSL 1 (best) BASIC3.38□□□□□ -1.87
VPS28Q9UK41 DDX3P2-201ENST00000446138 111 ntBASIC3.38□□□□□ -1.87
VPS28Q9UK41 COX6CP12-201ENST00000446748 202 ntBASIC3.38□□□□□ -1.87
VPS28Q9UK41 SCEL-AS1-201ENST00000456280 493 ntTSL 3 BASIC3.38□□□□□ -1.87
VPS28Q9UK41 SNRPFP4-201ENST00000456366 242 ntBASIC3.38□□□□□ -1.87
VPS28Q9UK41 MCCC1-AS1-201ENST00000471731 765 ntTSL 5 BASIC3.38□□□□□ -1.87
VPS28Q9UK41 AC138853.1-201ENST00000503549 823 ntBASIC3.38□□□□□ -1.87
VPS28Q9UK41 FABP5P5-201ENST00000515537 406 ntBASIC3.38□□□□□ -1.87
VPS28Q9UK41 RNA5SP290-201ENST00000517133 127 ntBASIC3.38□□□□□ -1.87
VPS28Q9UK41 AC093331.1-201ENST00000521474 169 ntBASIC3.38□□□□□ -1.87
VPS28Q9UK41 AC022878.1-201ENST00000530684 149 ntBASIC3.38□□□□□ -1.87
VPS28Q9UK41 AP000790.2-201ENST00000534388 522 ntTSL 3 BASIC3.38□□□□□ -1.87
VPS28Q9UK41 EMP1-206ENST00000537612 505 ntTSL 3 BASIC3.38□□□□□ -1.87
VPS28Q9UK41 AL358335.2-201ENST00000555693 487 ntTSL 3 BASIC3.38□□□□□ -1.87
VPS28Q9UK41 AC012379.1-201ENST00000558304 406 ntTSL 3 BASIC3.38□□□□□ -1.87
VPS28Q9UK41 AL157394.1-201ENST00000562983 1224 ntBASIC3.38□□□□□ -1.87
VPS28Q9UK41 BLOC1S6-206ENST00000564765 706 ntTSL 4 BASIC3.38□□□□□ -1.87
VPS28Q9UK41 AC037471.2-201ENST00000564941 598 ntBASIC3.38□□□□□ -1.87
VPS28Q9UK41 MIR3118-1-201ENST00000581787 76 ntBASIC3.38□□□□□ -1.87
VPS28Q9UK41 AC233702.6-201ENST00000584594 396 ntTSL 3 BASIC3.38□□□□□ -1.87
VPS28Q9UK41 ABBA01006766.1-201ENST00000584728 294 ntBASIC3.38□□□□□ -1.87
VPS28Q9UK41 AC006504.3-201ENST00000586818 523 ntBASIC3.38□□□□□ -1.87
VPS28Q9UK41 CKS1BP3-201ENST00000600888 237 ntBASIC3.38□□□□□ -1.87
VPS28Q9UK41 AC012065.4-201ENST00000602445 679 ntBASIC3.38□□□□□ -1.87
VPS28Q9UK41 AL683887.1-201ENST00000603401 287 ntTSL 3 BASIC3.38□□□□□ -1.87
VPS28Q9UK41 AC136601.2-201ENST00000604356 474 ntBASIC3.38□□□□□ -1.87
VPS28Q9UK41 AL136363.1-201ENST00000605349 337 ntBASIC3.38□□□□□ -1.87
VPS28Q9UK41 AC073657.2-201ENST00000605661 303 ntBASIC3.38□□□□□ -1.87
VPS28Q9UK41 RNU6-87P-201ENST00000607561 108 ntBASIC3.38□□□□□ -1.87
Retrieved 100 of 98,524 protein–RNA pairs in 88.2 ms