Protein–RNA interactions for Protein: Q9NZR4

VSX1, Visual system homeobox 1, humanhuman

Predicted RBP Predictions only

Length 365 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VSX1Q9NZR4 RAB28P1-201ENST00000411517 641 ntBASIC3.83□□□□□ -1.8
VSX1Q9NZR4 AC080125.1-201ENST00000414888 684 ntBASIC3.83□□□□□ -1.8
VSX1Q9NZR4 ACTR3BP6-201ENST00000422332 1241 ntBASIC3.83□□□□□ -1.8
VSX1Q9NZR4 AL109947.1-201ENST00000423747 382 ntTSL 2 BASIC3.83□□□□□ -1.8
VSX1Q9NZR4 LANCL1-AS1-203ENST00000433296 864 ntTSL 2 BASIC3.83□□□□□ -1.8
VSX1Q9NZR4 AL158209.1-201ENST00000433460 439 ntTSL 3 BASIC3.83□□□□□ -1.8
VSX1Q9NZR4 AC002386.1-201ENST00000436714 398 ntTSL 2 BASIC3.83□□□□□ -1.8
VSX1Q9NZR4 GTF2IP13-201ENST00000438487 386 ntBASIC3.83□□□□□ -1.8
VSX1Q9NZR4 AC122136.1-201ENST00000443971 478 ntTSL 3 BASIC3.83□□□□□ -1.8
VSX1Q9NZR4 RPS11P1-201ENST00000451072 473 ntBASIC3.83□□□□□ -1.8
VSX1Q9NZR4 FABP5P13-201ENST00000452144 328 ntBASIC3.83□□□□□ -1.8
VSX1Q9NZR4 AC019155.3-201ENST00000454957 600 ntTSL 2 BASIC3.83□□□□□ -1.8
VSX1Q9NZR4 SCARNA18-201ENST00000459004 134 ntBASIC3.83□□□□□ -1.8
VSX1Q9NZR4 ARHGEF3-AS1-202ENST00000495939 336 ntTSL 3 BASIC3.83□□□□□ -1.8
VSX1Q9NZR4 HIGD1AP13-201ENST00000509878 289 ntBASIC3.83□□□□□ -1.8
VSX1Q9NZR4 SEMA6A-AS1-204ENST00000510682 521 ntTSL 5 BASIC3.83□□□□□ -1.8
VSX1Q9NZR4 AC104136.1-201ENST00000512969 394 ntBASIC3.83□□□□□ -1.8
VSX1Q9NZR4 SNORA31.3-201ENST00000516029 96 ntBASIC3.83□□□□□ -1.8
VSX1Q9NZR4 RNU6-189P-201ENST00000516120 101 ntBASIC3.83□□□□□ -1.8
VSX1Q9NZR4 AC025871.1-202ENST00000518819 432 ntTSL 3 BASIC3.83□□□□□ -1.8
VSX1Q9NZR4 AC090136.1-201ENST00000520009 240 ntBASIC3.83□□□□□ -1.8
VSX1Q9NZR4 AC109635.4-202ENST00000531666 412 ntBASIC3.83□□□□□ -1.8
VSX1Q9NZR4 AP000889.2-201ENST00000532684 490 ntBASIC3.83□□□□□ -1.8
VSX1Q9NZR4 NACA-211ENST00000548563 827 ntTSL 5 BASIC3.83□□□□□ -1.8
VSX1Q9NZR4 SCOCP1-201ENST00000554676 349 ntBASIC3.83□□□□□ -1.8
VSX1Q9NZR4 MTCO3P23-201ENST00000561363 289 ntBASIC3.83□□□□□ -1.8
VSX1Q9NZR4 AC076968.1-201ENST00000566418 429 ntTSL 5 BASIC3.83□□□□□ -1.8
VSX1Q9NZR4 ZNF230-204ENST00000585632 579 ntTSL 2 BASIC3.83□□□□□ -1.8
VSX1Q9NZR4 OR7A5-202ENST00000594432 1029 ntAPPRIS P1 BASIC3.83□□□□□ -1.8
VSX1Q9NZR4 BNIP3P25-201ENST00000596023 559 ntBASIC3.83□□□□□ -1.8
VSX1Q9NZR4 AC244505.7-201ENST00000599675 272 ntBASIC3.83□□□□□ -1.8
VSX1Q9NZR4 AL589765.7-201ENST00000601684 629 ntTSL 3 BASIC3.83□□□□□ -1.8
VSX1Q9NZR4 AP001172.2-201ENST00000602454 467 ntTSL 5 BASIC3.83□□□□□ -1.8
VSX1Q9NZR4 AL133255.1-201ENST00000606374 441 ntBASIC3.83□□□□□ -1.8
VSX1Q9NZR4 AC103710.3-201ENST00000608157 948 ntBASIC3.83□□□□□ -1.8
VSX1Q9NZR4 RASSF8-215ENST00000611440 852 ntTSL 5 BASIC3.83□□□□□ -1.8
VSX1Q9NZR4 AC004696.1-201ENST00000614345 607 ntBASIC3.83□□□□□ -1.8
VSX1Q9NZR4 SEPT14P19-202ENST00000632397 370 ntTSL 3 BASIC3.83□□□□□ -1.8
VSX1Q9NZR4 MGA-207ENST00000566586 14439 ntAPPRIS ALT2 TSL 1 (best) BASIC3.83□□□□□ -1.8
VSX1Q9NZR4 ZNF736P3Y-201ENST00000428264 1465 ntBASIC3.83□□□□□ -1.8
VSX1Q9NZR4 MTRNR2L10-201ENST00000545075 1530 ntAPPRIS P1 BASIC3.83□□□□□ -1.8
VSX1Q9NZR4 LRMP-201ENST00000354454 2504 ntAPPRIS P2 TSL 1 (best) BASIC3.83□□□□□ -1.8
VSX1Q9NZR4 FAT3-204ENST00000525166 18699 ntTSL 5 BASIC3.83□□□□□ -1.8
VSX1Q9NZR4 MYNN-202ENST00000356716 2833 ntAPPRIS P1 TSL 1 (best) BASIC3.83□□□□□ -1.8
VSX1Q9NZR4 SLC2A2-201ENST00000314251 3210 ntAPPRIS P1 TSL 1 (best) BASIC3.83□□□□□ -1.8
VSX1Q9NZR4 EXOC1-202ENST00000349598 3248 ntAPPRIS ALT1 TSL 2 BASIC3.83□□□□□ -1.8
VSX1Q9NZR4 MACF1-204ENST00000372915 23440 ntAPPRIS ALT2 TSL 5 BASIC3.83□□□□□ -1.8
VSX1Q9NZR4 NR3C1-202ENST00000343796 7286 ntAPPRIS P3 TSL 5 BASIC3.82□□□□□ -1.8
VSX1Q9NZR4 ANKRD28-215ENST00000624145 6383 ntTSL 2 BASIC3.82□□□□□ -1.8
VSX1Q9NZR4 PTGFR-203ENST00000370758 4337 ntAPPRIS P1 TSL 1 (best) BASIC3.82□□□□□ -1.8
VSX1Q9NZR4 SGIP1-206ENST00000435165 3646 ntAPPRIS ALT2 TSL 2 BASIC3.82□□□□□ -1.8
VSX1Q9NZR4 PRO1804-201ENST00000623780 2050 ntBASIC3.82□□□□□ -1.8
VSX1Q9NZR4 AC009812.4-201ENST00000569134 1805 ntBASIC3.82□□□□□ -1.8
VSX1Q9NZR4 IGSF11-AS1-201ENST00000477009 1604 ntTSL 2 BASIC3.82□□□□□ -1.8
VSX1Q9NZR4 OR5J2-201ENST00000312298 939 ntAPPRIS P1 BASIC3.82□□□□□ -1.8
VSX1Q9NZR4 MIR331-201ENST00000362302 94 ntBASIC3.82□□□□□ -1.8
VSX1Q9NZR4 Y_RNA.184-201ENST00000363884 108 ntBASIC3.82□□□□□ -1.8
VSX1Q9NZR4 Y_RNA.378-201ENST00000365652 113 ntBASIC3.82□□□□□ -1.8
VSX1Q9NZR4 XAGE1A-202ENST00000375600 474 ntTSL 1 (best) BASIC3.82□□□□□ -1.8
VSX1Q9NZR4 XAGE1B-202ENST00000375613 474 ntTSL 1 (best) BASIC3.82□□□□□ -1.8
VSX1Q9NZR4 RNU6-1127P-201ENST00000384580 107 ntBASIC3.82□□□□□ -1.8
VSX1Q9NZR4 TRAV7-201ENST00000390429 337 ntAPPRIS P1 BASIC3.82□□□□□ -1.8
VSX1Q9NZR4 RPS16P5-201ENST00000406501 404 ntBASIC3.82□□□□□ -1.8
VSX1Q9NZR4 AC062039.1-201ENST00000414394 565 ntTSL 2 BASIC3.82□□□□□ -1.8
VSX1Q9NZR4 AL590139.1-201ENST00000416267 400 ntBASIC3.82□□□□□ -1.8
VSX1Q9NZR4 EI24P1-201ENST00000416584 867 ntBASIC3.82□□□□□ -1.8
VSX1Q9NZR4 SSXP9-201ENST00000417503 292 ntBASIC3.82□□□□□ -1.8
VSX1Q9NZR4 AL139396.1-201ENST00000421137 167 ntBASIC3.82□□□□□ -1.8
VSX1Q9NZR4 MTCO1P39-201ENST00000426148 480 ntBASIC3.82□□□□□ -1.8
VSX1Q9NZR4 MTATP6P4-201ENST00000427725 675 ntBASIC3.82□□□□□ -1.8
VSX1Q9NZR4 RPL23AP1-201ENST00000428990 471 ntBASIC3.82□□□□□ -1.8
VSX1Q9NZR4 AL078601.2-201ENST00000429444 474 ntTSL 2 BASIC3.82□□□□□ -1.8
VSX1Q9NZR4 RPL23AP69-201ENST00000431134 458 ntBASIC3.82□□□□□ -1.8
VSX1Q9NZR4 AC018359.1-201ENST00000442567 574 ntTSL 4 BASIC3.82□□□□□ -1.8
VSX1Q9NZR4 AC010975.1-201ENST00000443301 669 ntTSL 3 BASIC3.82□□□□□ -1.8
VSX1Q9NZR4 AL161621.1-201ENST00000444796 340 ntTSL 3 BASIC3.82□□□□□ -1.8
VSX1Q9NZR4 AC007099.2-201ENST00000444852 336 ntTSL 5 BASIC3.82□□□□□ -1.8
VSX1Q9NZR4 AC104058.1-201ENST00000448028 297 ntBASIC3.82□□□□□ -1.8
VSX1Q9NZR4 AL353780.1-201ENST00000455583 458 ntTSL 2 BASIC3.82□□□□□ -1.8
VSX1Q9NZR4 TH2LCRR-203ENST00000457489 439 ntTSL 3 BASIC3.82□□□□□ -1.8
VSX1Q9NZR4 Y_RNA.635-201ENST00000459041 101 ntBASIC3.82□□□□□ -1.8
VSX1Q9NZR4 RPL31P60-201ENST00000478450 367 ntBASIC3.82□□□□□ -1.8
VSX1Q9NZR4 AC068587.1-201ENST00000483613 781 ntBASIC3.82□□□□□ -1.8
VSX1Q9NZR4 AC097372.3-201ENST00000503593 522 ntTSL 3 BASIC3.82□□□□□ -1.8
VSX1Q9NZR4 AC010280.1-201ENST00000515199 340 ntTSL 2 BASIC3.82□□□□□ -1.8
VSX1Q9NZR4 SNORA25.17-201ENST00000517184 124 ntBASIC3.82□□□□□ -1.8
VSX1Q9NZR4 AC027018.1-202ENST00000534723 383 ntTSL 3 BASIC3.82□□□□□ -1.8
VSX1Q9NZR4 AC107016.1-201ENST00000550463 337 ntBASIC3.82□□□□□ -1.8
VSX1Q9NZR4 AC011773.2-201ENST00000551479 285 ntTSL 5 BASIC3.82□□□□□ -1.8
VSX1Q9NZR4 LINC02459-201ENST00000551761 474 ntTSL 3 BASIC3.82□□□□□ -1.8
VSX1Q9NZR4 AL121821.2-201ENST00000556081 394 ntBASIC3.82□□□□□ -1.8
VSX1Q9NZR4 ANP32BP3-201ENST00000559213 706 ntBASIC3.82□□□□□ -1.8
VSX1Q9NZR4 AC092718.6-202ENST00000563072 408 ntTSL 2 BASIC3.82□□□□□ -1.8
VSX1Q9NZR4 AC087501.4-201ENST00000574460 235 ntTSL 5 BASIC3.82□□□□□ -1.8
VSX1Q9NZR4 AP001011.1-202ENST00000581172 667 ntTSL 3 BASIC3.82□□□□□ -1.8
VSX1Q9NZR4 AC067852.3-201ENST00000589177 561 ntBASIC3.82□□□□□ -1.8
VSX1Q9NZR4 AL161729.3-201ENST00000603533 673 ntBASIC3.82□□□□□ -1.8
VSX1Q9NZR4 AC113403.1-201ENST00000604910 193 ntBASIC3.82□□□□□ -1.8
VSX1Q9NZR4 AL670379.4-201ENST00000605279 254 ntBASIC3.82□□□□□ -1.8
VSX1Q9NZR4 AL133215.3-201ENST00000609801 448 ntBASIC3.82□□□□□ -1.8
Retrieved 100 of 98,524 protein–RNA pairs in 92.3 ms