Protein–RNA interactions for Protein: Q96QK1

VPS35, Vacuolar protein sorting-associated protein 35, humanhuman

Predictions only

Length 796 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35Q96QK1 MIR181A2-201ENST00000384863 110 ntBASIC2.74□□□□□ -1.97
VPS35Q96QK1 MIR9-1-201ENST00000385198 89 ntBASIC2.74□□□□□ -1.97
VPS35Q96QK1 AL109755.1-201ENST00000401791 649 ntBASIC2.74□□□□□ -1.97
VPS35Q96QK1 TANK-204ENST00000403609 555 ntTSL 1 (best) BASIC2.74□□□□□ -1.97
VPS35Q96QK1 RNA5SP21-201ENST00000410917 96 ntBASIC2.74□□□□□ -1.97
VPS35Q96QK1 RN7SKP140-201ENST00000411196 284 ntBASIC2.74□□□□□ -1.97
VPS35Q96QK1 UBE2FP1-201ENST00000416536 447 ntBASIC2.74□□□□□ -1.97
VPS35Q96QK1 AC013410.2-201ENST00000422627 201 ntBASIC2.74□□□□□ -1.97
VPS35Q96QK1 AL049637.1-201ENST00000424664 503 ntTSL 5 BASIC2.74□□□□□ -1.97
VPS35Q96QK1 AC007919.1-201ENST00000429380 217 ntBASIC2.74□□□□□ -1.97
VPS35Q96QK1 LINC02095-201ENST00000430908 346 ntTSL 2 BASIC2.74□□□□□ -1.97
VPS35Q96QK1 RAB6C-AS1-202ENST00000433431 123 ntBASIC2.74□□□□□ -1.97
VPS35Q96QK1 PIGFP3-201ENST00000441918 722 ntBASIC2.74□□□□□ -1.97
VPS35Q96QK1 AL589684.1-201ENST00000445974 507 ntTSL 3 BASIC2.74□□□□□ -1.97
VPS35Q96QK1 DDX3P2-201ENST00000446138 111 ntBASIC2.74□□□□□ -1.97
VPS35Q96QK1 RPL23AP35-201ENST00000451906 501 ntBASIC2.74□□□□□ -1.97
VPS35Q96QK1 AL008723.1-201ENST00000452181 590 ntTSL 5 BASIC2.74□□□□□ -1.97
VPS35Q96QK1 AC092422.1-201ENST00000455576 584 ntTSL 4 BASIC2.74□□□□□ -1.97
VPS35Q96QK1 AL136164.1-201ENST00000456795 352 ntTSL 3 BASIC2.74□□□□□ -1.97
VPS35Q96QK1 LINC02198-201ENST00000504280 810 ntTSL 3 BASIC2.74□□□□□ -1.97
VPS35Q96QK1 LINC02213-202ENST00000506021 774 ntTSL 2 BASIC2.74□□□□□ -1.97
VPS35Q96QK1 MTCO2P15-201ENST00000532655 656 ntBASIC2.74□□□□□ -1.97
VPS35Q96QK1 LINC02329-201ENST00000554753 511 ntTSL 5 BASIC2.74□□□□□ -1.97
VPS35Q96QK1 AC087465.1-201ENST00000560574 245 ntBASIC2.74□□□□□ -1.97
VPS35Q96QK1 LINC01735-201ENST00000568112 279 ntTSL 3 BASIC2.74□□□□□ -1.97
VPS35Q96QK1 AC138761.3-201ENST00000579993 334 ntBASIC2.74□□□□□ -1.97
VPS35Q96QK1 AC024610.1-201ENST00000582685 323 ntTSL 3 BASIC2.74□□□□□ -1.97
VPS35Q96QK1 AL450336.1-201ENST00000605180 586 ntBASIC2.74□□□□□ -1.97
VPS35Q96QK1 MIR7106-201ENST00000612419 65 ntBASIC2.74□□□□□ -1.97
VPS35Q96QK1 SDR42E1P2-201ENST00000614861 481 ntBASIC2.74□□□□□ -1.97
VPS35Q96QK1 PDCD6IPP1-201ENST00000615124 579 ntTSL 2 BASIC2.74□□□□□ -1.97
VPS35Q96QK1 AC068880.5-201ENST00000624331 290 ntBASIC2.74□□□□□ -1.97
VPS35Q96QK1 DLD-214ENST00000639772 421 ntTSL 5 BASIC2.74□□□□□ -1.97
VPS35Q96QK1 PPP2R2A-224ENST00000640787 318 ntTSL 5 BASIC2.74□□□□□ -1.97
VPS35Q96QK1 AC022336.2-201ENST00000568966 2538 ntBASIC2.74□□□□□ -1.97
VPS35Q96QK1 AC099654.7-201ENST00000635788 2127 ntBASIC2.74□□□□□ -1.97
VPS35Q96QK1 FAM133CP-201ENST00000332869 704 ntBASIC2.73□□□□□ -1.97
VPS35Q96QK1 RNU6-223P-201ENST00000362830 107 ntBASIC2.73□□□□□ -1.97
VPS35Q96QK1 RNU6-723P-201ENST00000383973 107 ntBASIC2.73□□□□□ -1.97
VPS35Q96QK1 MIR513B-201ENST00000385136 84 ntBASIC2.73□□□□□ -1.97
VPS35Q96QK1 AL138827.1-201ENST00000402666 306 ntBASIC2.73□□□□□ -1.97
VPS35Q96QK1 TXNP7-201ENST00000406296 293 ntBASIC2.73□□□□□ -1.97
VPS35Q96QK1 RNU2-33P-201ENST00000410344 192 ntBASIC2.73□□□□□ -1.97
VPS35Q96QK1 AL451054.2-201ENST00000420896 202 ntBASIC2.73□□□□□ -1.97
VPS35Q96QK1 AL390774.2-201ENST00000423942 788 ntTSL 3 BASIC2.73□□□□□ -1.97
VPS35Q96QK1 AC003084.1-201ENST00000427030 435 ntTSL 5 BASIC2.73□□□□□ -1.97
VPS35Q96QK1 AL714022.1-201ENST00000439897 151 ntBASIC2.73□□□□□ -1.97
VPS35Q96QK1 CR769776.1-201ENST00000441254 787 ntBASIC2.73□□□□□ -1.97
VPS35Q96QK1 AC099342.1-201ENST00000446399 1124 ntTSL 3 BASIC2.73□□□□□ -1.97
VPS35Q96QK1 CHODL-AS1-201ENST00000447175 1117 ntTSL 2 BASIC2.73□□□□□ -1.97
VPS35Q96QK1 RPS20P22-201ENST00000473700 357 ntBASIC2.73□□□□□ -1.97
VPS35Q96QK1 AC116337.2-201ENST00000477662 156 ntBASIC2.73□□□□□ -1.97
VPS35Q96QK1 KC877373.1-201ENST00000479066 408 ntBASIC2.73□□□□□ -1.97
VPS35Q96QK1 AC096576.1-201ENST00000489014 359 ntBASIC2.73□□□□□ -1.97
VPS35Q96QK1 AC008883.2-201ENST00000505796 414 ntTSL 3 BASIC2.73□□□□□ -1.97
VPS35Q96QK1 AC022447.3-201ENST00000506865 495 ntBASIC2.73□□□□□ -1.97
VPS35Q96QK1 TPT1P8-201ENST00000510120 555 ntBASIC2.73□□□□□ -1.97
VPS35Q96QK1 AC098868.1-201ENST00000512628 624 ntTSL 2 BASIC2.73□□□□□ -1.97
VPS35Q96QK1 AC109454.3-201ENST00000512748 669 ntTSL 3 BASIC2.73□□□□□ -1.97
VPS35Q96QK1 RNU6-311P-201ENST00000516224 102 ntBASIC2.73□□□□□ -1.97
VPS35Q96QK1 RNA5SP291-201ENST00000517222 105 ntBASIC2.73□□□□□ -1.97
VPS35Q96QK1 AC004486.1-201ENST00000546846 233 ntBASIC2.73□□□□□ -1.97
VPS35Q96QK1 AC079600.2-201ENST00000550076 130 ntBASIC2.73□□□□□ -1.97
VPS35Q96QK1 PCED1B-AS1-208ENST00000551898 359 ntTSL 3 BASIC2.73□□□□□ -1.97
VPS35Q96QK1 LINC02309-201ENST00000553679 207 ntTSL 3 BASIC2.73□□□□□ -1.97
VPS35Q96QK1 AC090772.1-201ENST00000583782 507 ntTSL 5 BASIC2.73□□□□□ -1.97
VPS35Q96QK1 AC006504.3-201ENST00000586818 523 ntBASIC2.73□□□□□ -1.97
VPS35Q96QK1 AF038458.1-201ENST00000588406 262 ntBASIC2.73□□□□□ -1.97
VPS35Q96QK1 AC098848.1-201ENST00000588466 567 ntTSL 4 BASIC2.73□□□□□ -1.97
VPS35Q96QK1 AC002545.1-201ENST00000592511 181 ntBASIC2.73□□□□□ -1.97
VPS35Q96QK1 AC020895.1-201ENST00000595362 272 ntBASIC2.73□□□□□ -1.97
VPS35Q96QK1 AC008739.2-201ENST00000597006 317 ntBASIC2.73□□□□□ -1.97
VPS35Q96QK1 AC008277.2-201ENST00000605196 797 ntBASIC2.73□□□□□ -1.97
VPS35Q96QK1 AC092106.3-201ENST00000611308 722 ntBASIC2.73□□□□□ -1.97
VPS35Q96QK1 C8orf59-208ENST00000612809 475 ntAPPRIS P1 TSL 1 (best) BASIC2.73□□□□□ -1.97
VPS35Q96QK1 AC093838.1-201ENST00000613014 469 ntBASIC2.73□□□□□ -1.97
VPS35Q96QK1 OR5H6-201ENST00000615035 1113 ntAPPRIS P1 BASIC2.73□□□□□ -1.97
VPS35Q96QK1 AL356596.1-201ENST00000624230 379 ntBASIC2.73□□□□□ -1.97
VPS35Q96QK1 TAB2-201ENST00000367456 4553 ntAPPRIS P1 TSL 5 BASIC2.73□□□□□ -1.97
VPS35Q96QK1 TMEM232-201ENST00000455884 2501 ntAPPRIS P2 TSL 2 BASIC2.73□□□□□ -1.97
VPS35Q96QK1 SIRT1-202ENST00000403579 3333 ntTSL 1 (best) BASIC2.73□□□□□ -1.97
VPS35Q96QK1 PCF11-AS1-201ENST00000602322 1516 ntBASIC2.73□□□□□ -1.97
VPS35Q96QK1 DNAJC2-201ENST00000249270 1846 ntTSL 1 (best) BASIC2.72□□□□□ -1.97
VPS35Q96QK1 FOXP2-210ENST00000403559 6415 ntTSL 2 BASIC2.72□□□□□ -1.97
VPS35Q96QK1 CHD9-202ENST00000398510 11337 ntTSL 1 (best) BASIC2.72□□□□□ -1.97
VPS35Q96QK1 SYTL2-230ENST00000634661 6672 ntTSL 5 BASIC2.72□□□□□ -1.97
VPS35Q96QK1 TRAV26-1-201ENST00000390455 537 ntAPPRIS P1 BASIC2.72□□□□□ -1.97
VPS35Q96QK1 AC062039.1-201ENST00000414394 565 ntTSL 2 BASIC2.72□□□□□ -1.97
VPS35Q96QK1 BX682237.1-201ENST00000415016 335 ntBASIC2.72□□□□□ -1.97
VPS35Q96QK1 NBDY-202ENST00000423617 543 ntAPPRIS P1 TSL 2 BASIC2.72□□□□□ -1.97
VPS35Q96QK1 AC093843.1-201ENST00000424395 512 ntTSL 2 BASIC2.72□□□□□ -1.97
VPS35Q96QK1 AC092047.1-201ENST00000424997 240 ntBASIC2.72□□□□□ -1.97
VPS35Q96QK1 RPL7P37-201ENST00000425095 738 ntBASIC2.72□□□□□ -1.97
VPS35Q96QK1 TCF7L1-IT1-201ENST00000433581 458 ntTSL 3 BASIC2.72□□□□□ -1.97
VPS35Q96QK1 INTS6-AS1-201ENST00000434512 466 ntTSL 3 BASIC2.72□□□□□ -1.97
VPS35Q96QK1 MACC1-AS1-201ENST00000439285 639 ntTSL 3 BASIC2.72□□□□□ -1.97
VPS35Q96QK1 AL049734.2-201ENST00000441066 616 ntBASIC2.72□□□□□ -1.97
VPS35Q96QK1 AL831737.1-201ENST00000441288 271 ntBASIC2.72□□□□□ -1.97
VPS35Q96QK1 AC025750.2-201ENST00000442609 450 ntBASIC2.72□□□□□ -1.97
VPS35Q96QK1 MTCO3P45-201ENST00000443036 613 ntBASIC2.72□□□□□ -1.97
Retrieved 100 of 98,524 protein–RNA pairs in 95.9 ms