Protein–RNA interactions for Protein: Q70EK8

USP53, Inactive ubiquitin carboxyl-terminal hydrolase 53, humanhuman

Predictions only

Length 1,073 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP53Q70EK8 ELAVL4-203ENST00000371821 3349 ntTSL 5 BASIC4.43□□□□□ -1.7
USP53Q70EK8 STON1-GTF2A1L-203ENST00000402114 3790 ntTSL 2 BASIC4.42□□□□□ -1.7
USP53Q70EK8 ZNF883-201ENST00000619044 2051 ntAPPRIS P1 TSL 5 BASIC4.42□□□□□ -1.7
USP53Q70EK8 POSTN-210ENST00000541481 3113 ntTSL 1 (best) BASIC4.42□□□□□ -1.7
USP53Q70EK8 STAG2-204ENST00000371157 5991 ntAPPRIS P3 TSL 1 (best) BASIC4.42□□□□□ -1.7
USP53Q70EK8 RNU1-94P-201ENST00000362627 173 ntBASIC4.42□□□□□ -1.7
USP53Q70EK8 RNU5A-1-201ENST00000362698 116 ntBASIC4.42□□□□□ -1.7
USP53Q70EK8 IARS-201ENST00000375627 697 ntTSL 3 BASIC4.42□□□□□ -1.7
USP53Q70EK8 RNU6-128P-201ENST00000383976 107 ntBASIC4.42□□□□□ -1.7
USP53Q70EK8 Y_RNA.482-201ENST00000384377 111 ntBASIC4.42□□□□□ -1.7
USP53Q70EK8 TRAV7-201ENST00000390429 337 ntAPPRIS P1 BASIC4.42□□□□□ -1.7
USP53Q70EK8 HSPE1P8-201ENST00000406997 288 ntBASIC4.42□□□□□ -1.7
USP53Q70EK8 RNU6-954P-201ENST00000411355 107 ntBASIC4.42□□□□□ -1.7
USP53Q70EK8 AC093911.1-201ENST00000419129 552 ntTSL 4 BASIC4.42□□□□□ -1.7
USP53Q70EK8 BX842559.1-201ENST00000419615 532 ntBASIC4.42□□□□□ -1.7
USP53Q70EK8 AL356387.2-201ENST00000422272 243 ntBASIC4.42□□□□□ -1.7
USP53Q70EK8 AC004875.1-201ENST00000432702 378 ntTSL 3 BASIC4.42□□□□□ -1.7
USP53Q70EK8 AL691515.1-201ENST00000432976 733 ntTSL 2 BASIC4.42□□□□□ -1.7
USP53Q70EK8 NUTF2P3-201ENST00000448540 384 ntBASIC4.42□□□□□ -1.7
USP53Q70EK8 Y_RNA.631-201ENST00000459607 101 ntBASIC4.42□□□□□ -1.7
USP53Q70EK8 RN7SL303P-201ENST00000469773 251 ntBASIC4.42□□□□□ -1.7
USP53Q70EK8 RN7SL604P-201ENST00000492589 296 ntBASIC4.42□□□□□ -1.7
USP53Q70EK8 AC106744.2-202ENST00000515123 448 ntTSL 3 BASIC4.42□□□□□ -1.7
USP53Q70EK8 CYCSP27-201ENST00000527643 293 ntBASIC4.42□□□□□ -1.7
USP53Q70EK8 AC055720.1-201ENST00000539552 475 ntTSL 5 BASIC4.42□□□□□ -1.7
USP53Q70EK8 TMEM106C-220ENST00000552561 810 ntAPPRIS P1 TSL 1 (best) BASIC4.42□□□□□ -1.7
USP53Q70EK8 AC012182.1-201ENST00000570133 895 ntBASIC4.42□□□□□ -1.7
USP53Q70EK8 IPO5P1-202ENST00000600039 287 ntBASIC4.42□□□□□ -1.7
USP53Q70EK8 MIR99AHG-211ENST00000602323 475 ntTSL 5 BASIC4.42□□□□□ -1.7
USP53Q70EK8 AC080078.1-201ENST00000603643 410 ntTSL 3 BASIC4.42□□□□□ -1.7
USP53Q70EK8 AL360085.1-201ENST00000604713 532 ntBASIC4.42□□□□□ -1.7
USP53Q70EK8 AL360181.4-201ENST00000621752 134 ntBASIC4.42□□□□□ -1.7
USP53Q70EK8 KIAA1524-208ENST00000625495 147 ntTSL 5 BASIC4.42□□□□□ -1.7
USP53Q70EK8 RUVBL2-213ENST00000639391 120 ntTSL 5 BASIC4.42□□□□□ -1.7
USP53Q70EK8 OR2H1-202ENST00000377133 3021 ntAPPRIS P1 BASIC4.42□□□□□ -1.7
USP53Q70EK8 SYT16-205ENST00000568344 13978 ntAPPRIS P1 TSL 1 (best) BASIC4.42□□□□□ -1.7
USP53Q70EK8 CEP152-203ENST00000399334 5097 ntAPPRIS P3 TSL 1 (best) BASIC4.42□□□□□ -1.7
USP53Q70EK8 RC3H1-201ENST00000258349 10988 ntAPPRIS P3 TSL 1 (best) BASIC4.42□□□□□ -1.7
USP53Q70EK8 EBAG9-210ENST00000620557 2186 ntAPPRIS P1 TSL 3 BASIC4.41□□□□□ -1.7
USP53Q70EK8 ABI3BP-201ENST00000284322 4498 ntAPPRIS P2 TSL 1 (best) BASIC4.41□□□□□ -1.7
USP53Q70EK8 RAB23-201ENST00000317483 2546 ntAPPRIS P1 TSL 1 (best) BASIC4.41□□□□□ -1.7
USP53Q70EK8 GHR-213ENST00000622294 4312 ntTSL 5 BASIC4.41□□□□□ -1.7
USP53Q70EK8 C6-201ENST00000263413 3661 ntAPPRIS P1 TSL 1 (best) BASIC4.41□□□□□ -1.7
USP53Q70EK8 MFSD8-242ENST00000641690 4199 ntBASIC4.41□□□□□ -1.7
USP53Q70EK8 MINPP1-204ENST00000536010 2215 ntTSL 1 (best) BASIC4.41□□□□□ -1.7
USP53Q70EK8 SPAG5-AS1-202ENST00000424210 1551 ntTSL 2 BASIC4.41□□□□□ -1.7
USP53Q70EK8 MAPK10-235ENST00000638225 8941 ntAPPRIS P2 TSL 1 (best) BASIC4.41□□□□□ -1.7
USP53Q70EK8 POLK-217ENST00000515295 1438 ntTSL 1 (best) BASIC4.41□□□□□ -1.7
USP53Q70EK8 RNU6-562P-201ENST00000362731 107 ntBASIC4.41□□□□□ -1.7
USP53Q70EK8 RNU6-1188P-201ENST00000363795 107 ntBASIC4.41□□□□□ -1.7
USP53Q70EK8 RNA5SP28-201ENST00000363841 119 ntBASIC4.41□□□□□ -1.7
USP53Q70EK8 Y_RNA.187-201ENST00000363918 113 ntBASIC4.41□□□□□ -1.7
USP53Q70EK8 RNU6-371P-201ENST00000364283 108 ntBASIC4.41□□□□□ -1.7
USP53Q70EK8 Y_RNA.395-201ENST00000383945 109 ntBASIC4.41□□□□□ -1.7
USP53Q70EK8 RNU6-45P-201ENST00000384471 107 ntBASIC4.41□□□□□ -1.7
USP53Q70EK8 Y_RNA.534-201ENST00000384599 112 ntBASIC4.41□□□□□ -1.7
USP53Q70EK8 MIR559-201ENST00000385188 96 ntBASIC4.41□□□□□ -1.7
USP53Q70EK8 MIR134-201ENST00000385258 73 ntBASIC4.41□□□□□ -1.7
USP53Q70EK8 RPS26P8-201ENST00000393490 348 ntBASIC4.41□□□□□ -1.7
USP53Q70EK8 AL121834.1-202ENST00000404494 277 ntBASIC4.41□□□□□ -1.7
USP53Q70EK8 ATG3P1-201ENST00000419507 911 ntBASIC4.41□□□□□ -1.7
USP53Q70EK8 RPL21P109-201ENST00000422213 475 ntBASIC4.41□□□□□ -1.7
USP53Q70EK8 MTND2P23-201ENST00000422990 651 ntBASIC4.41□□□□□ -1.7
USP53Q70EK8 Z82205.1-201ENST00000428456 297 ntBASIC4.41□□□□□ -1.7
USP53Q70EK8 AC011998.1-201ENST00000433403 117 ntBASIC4.41□□□□□ -1.7
USP53Q70EK8 NIPA2P5-201ENST00000452282 464 ntBASIC4.41□□□□□ -1.7
USP53Q70EK8 RPL21P41-201ENST00000459863 264 ntBASIC4.41□□□□□ -1.7
USP53Q70EK8 AC087884.1-201ENST00000469738 328 ntBASIC4.41□□□□□ -1.7
USP53Q70EK8 AC010285.1-201ENST00000470580 392 ntBASIC4.41□□□□□ -1.7
USP53Q70EK8 AC009901.1-201ENST00000506703 541 ntBASIC4.41□□□□□ -1.7
USP53Q70EK8 AC025475.1-201ENST00000512939 487 ntTSL 3 BASIC4.41□□□□□ -1.7
USP53Q70EK8 RNU6-914P-201ENST00000516749 109 ntBASIC4.41□□□□□ -1.7
USP53Q70EK8 AC136777.1-201ENST00000517765 369 ntTSL 4 BASIC4.41□□□□□ -1.7
USP53Q70EK8 AC021242.2-201ENST00000522765 454 ntTSL 3 BASIC4.41□□□□□ -1.7
USP53Q70EK8 RGS4-209ENST00000531057 544 ntTSL 4 BASIC4.41□□□□□ -1.7
USP53Q70EK8 PSMA4-205ENST00000558281 773 ntTSL 3 BASIC4.41□□□□□ -1.7
USP53Q70EK8 AC022968.1-201ENST00000567372 442 ntBASIC4.41□□□□□ -1.7
USP53Q70EK8 AC022035.1-201ENST00000579923 302 ntTSL 2 BASIC4.41□□□□□ -1.7
USP53Q70EK8 MIR3138-201ENST00000585238 82 ntBASIC4.41□□□□□ -1.7
USP53Q70EK8 AC104534.1-201ENST00000594558 566 ntTSL 4 BASIC4.41□□□□□ -1.7
USP53Q70EK8 CYP2C61P-201ENST00000604072 290 ntBASIC4.41□□□□□ -1.7
USP53Q70EK8 AL355365.1-201ENST00000616480 294 ntBASIC4.41□□□□□ -1.7
USP53Q70EK8 AC098657.3-201ENST00000620434 263 ntBASIC4.41□□□□□ -1.7
USP53Q70EK8 BMS1P21-201ENST00000634565 365 ntBASIC4.41□□□□□ -1.7
USP53Q70EK8 AMY2A-201ENST00000414303 1634 ntAPPRIS P1 TSL 1 (best) BASIC4.41□□□□□ -1.7
USP53Q70EK8 PRKACB-208ENST00000394839 4200 ntTSL 2 BASIC4.41□□□□□ -1.7
USP53Q70EK8 OR56A3-205ENST00000641905 4595 ntAPPRIS P1 BASIC4.41□□□□□ -1.7
USP53Q70EK8 ASB5-201ENST00000296525 3031 ntAPPRIS P1 TSL 1 (best) BASIC4.41□□□□□ -1.7
USP53Q70EK8 C18orf54-202ENST00000382911 4056 ntTSL 5 BASIC4.41□□□□□ -1.7
USP53Q70EK8 FOXP2-220ENST00000634411 4065 ntTSL 5 BASIC4.41□□□□□ -1.7
USP53Q70EK8 RACGAP1-202ENST00000427314 3229 ntAPPRIS P1 TSL 1 (best) BASIC4.41□□□□□ -1.7
USP53Q70EK8 CDH10-201ENST00000264463 3438 ntAPPRIS P1 TSL 1 (best) BASIC4.41□□□□□ -1.7
USP53Q70EK8 AL136964.1-201ENST00000622038 2990 ntBASIC4.41□□□□□ -1.7
USP53Q70EK8 SNCA-AS1-201ENST00000501215 2646 ntTSL 2 BASIC4.41□□□□□ -1.7
USP53Q70EK8 MACF1-203ENST00000361689 17538 ntTSL 5 BASIC4.4□□□□□ -1.7
USP53Q70EK8 RNF180-202ENST00000389100 4906 ntAPPRIS P1 TSL 1 (best) BASIC4.4□□□□□ -1.7
USP53Q70EK8 C4orf17-204ENST00000514652 2542 ntAPPRIS ALT2 TSL 5 BASIC4.4□□□□□ -1.7
USP53Q70EK8 ZNF28-203ENST00000438150 5171 ntTSL 2 BASIC4.4□□□□□ -1.7
USP53Q70EK8 SALL4P2-201ENST00000423288 2910 ntBASIC4.4□□□□□ -1.7
USP53Q70EK8 KLRA1P-202ENST00000510134 1410 ntTSL 5 BASIC4.4□□□□□ -1.7
Retrieved 100 of 98,524 protein–RNA pairs in 109.8 ms