Protein–RNA interactions for Protein: Q12946

FOXF1, Forkhead box protein F1, humanhuman

Predictions only

Length 379 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXF1Q12946 AL513422.1-201ENST00000449531 383 ntTSL 2 BASIC1.82□□□□□ -2.12
FOXF1Q12946 AL139260.1-202ENST00000456813 441 ntTSL 3 BASIC1.82□□□□□ -2.12
FOXF1Q12946 AC026410.2-201ENST00000460281 156 ntBASIC1.82□□□□□ -2.12
FOXF1Q12946 APOA2-205ENST00000468465 421 ntTSL 2 BASIC1.82□□□□□ -2.12
FOXF1Q12946 AC097521.1-201ENST00000505488 567 ntTSL 3 BASIC1.82□□□□□ -2.12
FOXF1Q12946 MTCYBP16-201ENST00000509187 1129 ntBASIC1.82□□□□□ -2.12
FOXF1Q12946 RNU1-41P-201ENST00000516161 162 ntBASIC1.82□□□□□ -2.12
FOXF1Q12946 RNU1-48P-201ENST00000516400 162 ntBASIC1.82□□□□□ -2.12
FOXF1Q12946 RNA5SP471-201ENST00000516971 106 ntBASIC1.82□□□□□ -2.12
FOXF1Q12946 AC068643.2-201ENST00000547418 852 ntTSL 5 BASIC1.82□□□□□ -2.12
FOXF1Q12946 AC093025.1-201ENST00000547795 569 ntTSL 2 BASIC1.82□□□□□ -2.12
FOXF1Q12946 AC012170.3-201ENST00000560159 297 ntTSL 2 BASIC1.82□□□□□ -2.12
FOXF1Q12946 AC018904.1-201ENST00000560594 542 ntTSL 3 BASIC1.82□□□□□ -2.12
FOXF1Q12946 AC092718.6-202ENST00000563072 408 ntTSL 2 BASIC1.82□□□□□ -2.12
FOXF1Q12946 AC122134.1-202ENST00000569111 1201 ntBASIC1.82□□□□□ -2.12
FOXF1Q12946 LARP7P2-201ENST00000575306 125 ntBASIC1.82□□□□□ -2.12
FOXF1Q12946 AP005671.1-201ENST00000581798 463 ntTSL 3 BASIC1.82□□□□□ -2.12
FOXF1Q12946 AP005380.1-201ENST00000584896 547 ntTSL 4 BASIC1.82□□□□□ -2.12
FOXF1Q12946 AC097467.3-208ENST00000593486 670 ntTSL 5 BASIC1.82□□□□□ -2.12
FOXF1Q12946 AC069545.1-201ENST00000605671 358 ntBASIC1.82□□□□□ -2.12
FOXF1Q12946 AC112250.2-201ENST00000609450 491 ntTSL 3 BASIC1.82□□□□□ -2.12
FOXF1Q12946 AL161629.2-201ENST00000615347 275 ntBASIC1.82□□□□□ -2.12
FOXF1Q12946 AC215522.3-201ENST00000635602 354 ntTSL 5 BASIC1.82□□□□□ -2.12
FOXF1Q12946 TECRL-202ENST00000507440 2876 ntTSL 5 BASIC1.82□□□□□ -2.12
FOXF1Q12946 KERA-201ENST00000266719 2162 ntAPPRIS P1 TSL 1 (best) BASIC1.82□□□□□ -2.12
FOXF1Q12946 AC009812.4-201ENST00000569134 1805 ntBASIC1.82□□□□□ -2.12
FOXF1Q12946 OR4G11P-202ENST00000642116 1414 ntBASIC1.82□□□□□ -2.12
FOXF1Q12946 AGTR1-208ENST00000475347 1669 ntAPPRIS P1 TSL 3 BASIC1.81□□□□□ -2.12
FOXF1Q12946 ZCCHC10-202ENST00000355372 2160 ntAPPRIS ALT2 TSL 2 BASIC1.81□□□□□ -2.12
FOXF1Q12946 RNU4-52P-201ENST00000384209 138 ntBASIC1.81□□□□□ -2.12
FOXF1Q12946 RNU2-2P-201ENST00000410396 191 ntBASIC1.81□□□□□ -2.12
FOXF1Q12946 AL592310.1-201ENST00000414330 671 ntBASIC1.81□□□□□ -2.12
FOXF1Q12946 AL589946.1-201ENST00000421465 420 ntTSL 3 BASIC1.81□□□□□ -2.12
FOXF1Q12946 BEND7P1-201ENST00000422058 457 ntBASIC1.81□□□□□ -2.12
FOXF1Q12946 RAB3GAP1-202ENST00000425393 1139 ntTSL 2 BASIC1.81□□□□□ -2.12
FOXF1Q12946 AL445646.1-201ENST00000431784 216 ntBASIC1.81□□□□□ -2.12
FOXF1Q12946 MTND2P5-201ENST00000432656 1006 ntBASIC1.81□□□□□ -2.12
FOXF1Q12946 USP9YP22-201ENST00000438971 294 ntBASIC1.81□□□□□ -2.12
FOXF1Q12946 MTND2P20-201ENST00000440805 661 ntBASIC1.81□□□□□ -2.12
FOXF1Q12946 AC110995.1-201ENST00000444185 628 ntTSL 3 BASIC1.81□□□□□ -2.12
FOXF1Q12946 AC010976.1-211ENST00000454503 644 ntTSL 2 BASIC1.81□□□□□ -2.12
FOXF1Q12946 AC092902.1-201ENST00000486999 259 ntBASIC1.81□□□□□ -2.12
FOXF1Q12946 COX7A2P2-201ENST00000505291 250 ntBASIC1.81□□□□□ -2.12
FOXF1Q12946 AC114322.1-201ENST00000506771 926 ntBASIC1.81□□□□□ -2.12
FOXF1Q12946 AC109927.1-202ENST00000511951 282 ntTSL 3 BASIC1.81□□□□□ -2.12
FOXF1Q12946 VCAN-AS1-202ENST00000513899 453 ntTSL 3 BASIC1.81□□□□□ -2.12
FOXF1Q12946 AC112198.4-201ENST00000515450 351 ntBASIC1.81□□□□□ -2.12
FOXF1Q12946 RNU6-1028P-201ENST00000517164 93 ntBASIC1.81□□□□□ -2.12
FOXF1Q12946 NDST1-AS1-201ENST00000519040 368 ntTSL 2 BASIC1.81□□□□□ -2.12
FOXF1Q12946 AC013509.1-201ENST00000524269 339 ntTSL 3 BASIC1.81□□□□□ -2.12
FOXF1Q12946 TIMM9-203ENST00000555061 598 ntAPPRIS P1 TSL 1 (best) BASIC1.81□□□□□ -2.12
FOXF1Q12946 PSMA4-206ENST00000558341 719 ntTSL 5 BASIC1.81□□□□□ -2.12
FOXF1Q12946 AC023825.1-201ENST00000566704 1030 ntBASIC1.81□□□□□ -2.12
FOXF1Q12946 MIR4637-201ENST00000582405 84 ntBASIC1.81□□□□□ -2.12
FOXF1Q12946 RNASEH2B-AS1-202ENST00000593369 648 ntTSL 5 BASIC1.81□□□□□ -2.12
FOXF1Q12946 AC013444.2-201ENST00000603317 787 ntBASIC1.81□□□□□ -2.12
FOXF1Q12946 AL583856.2-201ENST00000606298 543 ntBASIC1.81□□□□□ -2.12
FOXF1Q12946 AC124016.2-201ENST00000610058 665 ntBASIC1.81□□□□□ -2.12
FOXF1Q12946 U2.15-201ENST00000611544 191 ntBASIC1.81□□□□□ -2.12
FOXF1Q12946 U2.16-201ENST00000613119 191 ntBASIC1.81□□□□□ -2.12
FOXF1Q12946 AC005332.6-201ENST00000613178 446 ntBASIC1.81□□□□□ -2.12
FOXF1Q12946 U2.12-201ENST00000613778 191 ntBASIC1.81□□□□□ -2.12
FOXF1Q12946 U2.20-201ENST00000613956 192 ntBASIC1.81□□□□□ -2.12
FOXF1Q12946 AC004852.3-201ENST00000614131 326 ntBASIC1.81□□□□□ -2.12
FOXF1Q12946 AC023158.2-201ENST00000614876 543 ntBASIC1.81□□□□□ -2.12
FOXF1Q12946 U2.9-201ENST00000615427 191 ntBASIC1.81□□□□□ -2.12
FOXF1Q12946 AC025588.4-201ENST00000615802 908 ntBASIC1.81□□□□□ -2.12
FOXF1Q12946 U2.11-201ENST00000616345 191 ntBASIC1.81□□□□□ -2.12
FOXF1Q12946 U2.2-201ENST00000616535 191 ntBASIC1.81□□□□□ -2.12
FOXF1Q12946 U2.3-201ENST00000617785 191 ntBASIC1.81□□□□□ -2.12
FOXF1Q12946 U2.19-201ENST00000618602 191 ntBASIC1.81□□□□□ -2.12
FOXF1Q12946 RNU2-1-201ENST00000618664 191 ntBASIC1.81□□□□□ -2.12
FOXF1Q12946 U2.6-201ENST00000619225 191 ntBASIC1.81□□□□□ -2.12
FOXF1Q12946 U2.5-201ENST00000619465 191 ntBASIC1.81□□□□□ -2.12
FOXF1Q12946 U2.10-201ENST00000620268 191 ntBASIC1.81□□□□□ -2.12
FOXF1Q12946 U6.101-201ENST00000637707 76 ntBASIC1.81□□□□□ -2.12
FOXF1Q12946 CCDC66-201ENST00000326595 3027 ntAPPRIS P3 TSL 1 (best) BASIC1.81□□□□□ -2.12
FOXF1Q12946 MCF2-204ENST00000414978 3813 ntAPPRIS ALT2 TSL 5 BASIC1.81□□□□□ -2.12
FOXF1Q12946 EYS-202ENST00000342421 2168 ntTSL 1 (best) BASIC1.81□□□□□ -2.12
FOXF1Q12946 CFH-202ENST00000367429 4127 ntAPPRIS P1 TSL 1 (best) BASIC1.81□□□□□ -2.12
FOXF1Q12946 HPGDS-201ENST00000295256 1636 ntAPPRIS P1 TSL 1 (best) BASIC1.8□□□□□ -2.12
FOXF1Q12946 SI-201ENST00000264382 6011 ntAPPRIS P1 TSL 1 (best) BASIC1.8□□□□□ -2.12
FOXF1Q12946 SPA17-201ENST00000227135 853 ntAPPRIS P1 TSL 1 (best) BASIC1.8□□□□□ -2.12
FOXF1Q12946 DEFB107A-201ENST00000335021 389 ntAPPRIS P1 TSL 1 (best) BASIC1.8□□□□□ -2.12
FOXF1Q12946 HSPE1P11-201ENST00000339579 310 ntBASIC1.8□□□□□ -2.12
FOXF1Q12946 DEFB107B-201ENST00000355602 389 ntAPPRIS P1 TSL 1 (best) BASIC1.8□□□□□ -2.12
FOXF1Q12946 RNU1-105P-201ENST00000363470 161 ntBASIC1.8□□□□□ -2.12
FOXF1Q12946 RNA5SP88-201ENST00000365560 109 ntBASIC1.8□□□□□ -2.12
FOXF1Q12946 SNORA6-201ENST00000384033 151 ntBASIC1.8□□□□□ -2.12
FOXF1Q12946 RNU6-198P-201ENST00000384258 104 ntBASIC1.8□□□□□ -2.12
FOXF1Q12946 HMGB1P17-201ENST00000403495 628 ntBASIC1.8□□□□□ -2.12
FOXF1Q12946 RNU6ATAC38P-201ENST00000408119 126 ntBASIC1.8□□□□□ -2.12
FOXF1Q12946 RNU6-193P-201ENST00000410977 107 ntBASIC1.8□□□□□ -2.12
FOXF1Q12946 UBE2Q2P5Y-201ENST00000413867 207 ntBASIC1.8□□□□□ -2.12
FOXF1Q12946 LINC01676-201ENST00000420901 410 ntTSL 3 BASIC1.8□□□□□ -2.12
FOXF1Q12946 RPL7L1P10-201ENST00000427790 463 ntBASIC1.8□□□□□ -2.12
FOXF1Q12946 PSMA6P3-201ENST00000428242 164 ntBASIC1.8□□□□□ -2.12
FOXF1Q12946 LINC01817-201ENST00000429317 564 ntTSL 4 BASIC1.8□□□□□ -2.12
FOXF1Q12946 AC017048.2-201ENST00000431455 822 ntTSL 3 BASIC1.8□□□□□ -2.12
FOXF1Q12946 UBE2Q2P4Y-201ENST00000433767 207 ntBASIC1.8□□□□□ -2.12
Retrieved 100 of 98,524 protein–RNA pairs in 29.5 ms