Protein–RNA interactions for Protein: P49916

LIG3, DNA ligase 3, humanhuman

Predictions only

Length 1,009 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3P49916 AC017101.1-201ENST00000453665 571 ntTSL 4 BASIC4.89□□□□□ -1.63
LIG3P49916 AURKAPS2-201ENST00000454983 333 ntBASIC4.89□□□□□ -1.63
LIG3P49916 BTF3P15-201ENST00000455606 336 ntBASIC4.89□□□□□ -1.63
LIG3P49916 RNU7-138P-201ENST00000459479 64 ntBASIC4.89□□□□□ -1.63
LIG3P49916 RPS26P3-201ENST00000470205 348 ntBASIC4.89□□□□□ -1.63
LIG3P49916 AC084198.1-201ENST00000477747 402 ntBASIC4.89□□□□□ -1.63
LIG3P49916 AC090543.2-201ENST00000483963 348 ntBASIC4.89□□□□□ -1.63
LIG3P49916 AC004057.1-201ENST00000485827 348 ntBASIC4.89□□□□□ -1.63
LIG3P49916 IGLV2-34-201ENST00000490007 283 ntBASIC4.89□□□□□ -1.63
LIG3P49916 SRP72-202ENST00000504757 745 ntTSL 2 BASIC4.89□□□□□ -1.63
LIG3P49916 SNORA25.10-201ENST00000515926 124 ntBASIC4.89□□□□□ -1.63
LIG3P49916 AC023442.1-201ENST00000531247 422 ntBASIC4.89□□□□□ -1.63
LIG3P49916 AC244502.1-203ENST00000541008 576 ntTSL 4 BASIC4.89□□□□□ -1.63
LIG3P49916 AL132712.2-201ENST00000556653 127 ntTSL 3 BASIC4.89□□□□□ -1.63
LIG3P49916 MIR4680-201ENST00000580906 66 ntBASIC4.89□□□□□ -1.63
LIG3P49916 Hammerhead_HH10.1-201ENST00000620658 125 ntBASIC4.89□□□□□ -1.63
LIG3P49916 HOXA11-AS1_4.1-201ENST00000620901 233 ntBASIC4.89□□□□□ -1.63
LIG3P49916 USP26-203ENST00000511190 3665 ntAPPRIS P1 TSL 2 BASIC4.89□□□□□ -1.63
LIG3P49916 GPR18-203ENST00000397473 1660 ntAPPRIS P1 TSL 1 (best) BASIC4.89□□□□□ -1.63
LIG3P49916 OR8J3-203ENST00000641913 3047 ntAPPRIS P1 BASIC4.89□□□□□ -1.63
LIG3P49916 SDAD1P1-202ENST00000524156 2051 ntBASIC4.88□□□□□ -1.63
LIG3P49916 DAZ4-207ENST00000634662 1832 ntAPPRIS ALT2 TSL 5 BASIC4.88□□□□□ -1.63
LIG3P49916 AC004057.1-202ENST00000356247 284 ntTSL 3 BASIC4.88□□□□□ -1.63
LIG3P49916 RNU5A-1-201ENST00000362698 116 ntBASIC4.88□□□□□ -1.63
LIG3P49916 RNU6-371P-201ENST00000364283 108 ntBASIC4.88□□□□□ -1.63
LIG3P49916 Y_RNA.404-201ENST00000383978 102 ntBASIC4.88□□□□□ -1.63
LIG3P49916 Y_RNA.463-201ENST00000384271 102 ntBASIC4.88□□□□□ -1.63
LIG3P49916 MRPL42P3-201ENST00000401492 326 ntBASIC4.88□□□□□ -1.63
LIG3P49916 RNA5SP113-201ENST00000410486 84 ntBASIC4.88□□□□□ -1.63
LIG3P49916 Z99755.1-201ENST00000414048 380 ntBASIC4.88□□□□□ -1.63
LIG3P49916 LINC01344-201ENST00000420760 261 ntTSL 3 BASIC4.88□□□□□ -1.63
LIG3P49916 OR1H1P-201ENST00000448731 937 ntBASIC4.88□□□□□ -1.63
LIG3P49916 CYP4F62P-203ENST00000455215 552 ntTSL 4 BASIC4.88□□□□□ -1.63
LIG3P49916 RPS26P28-201ENST00000470806 348 ntBASIC4.88□□□□□ -1.63
LIG3P49916 RPL23AP2-201ENST00000471227 466 ntBASIC4.88□□□□□ -1.63
LIG3P49916 HSPE1P6-201ENST00000479457 291 ntBASIC4.88□□□□□ -1.63
LIG3P49916 AC009901.1-201ENST00000506703 541 ntBASIC4.88□□□□□ -1.63
LIG3P49916 Y_RNA.661-201ENST00000516003 99 ntBASIC4.88□□□□□ -1.63
LIG3P49916 RNU6-927P-201ENST00000516199 100 ntBASIC4.88□□□□□ -1.63
LIG3P49916 RNU6-1137P-201ENST00000517073 99 ntBASIC4.88□□□□□ -1.63
LIG3P49916 TMCO5B-203ENST00000529623 509 ntTSL 4 BASIC4.88□□□□□ -1.63
LIG3P49916 MIR4700-201ENST00000578311 74 ntBASIC4.88□□□□□ -1.63
LIG3P49916 PSMD5-AS1-203ENST00000589026 525 ntTSL 5 BASIC4.88□□□□□ -1.63
LIG3P49916 BNIP3P16-201ENST00000589779 534 ntBASIC4.88□□□□□ -1.63
LIG3P49916 AC003973.1-201ENST00000600071 546 ntTSL 4 BASIC4.88□□□□□ -1.63
LIG3P49916 LINC02112-205ENST00000606744 236 ntTSL 1 (best) BASIC4.88□□□□□ -1.63
LIG3P49916 AL161423.1-201ENST00000613700 262 ntBASIC4.88□□□□□ -1.63
LIG3P49916 AC034102.8-201ENST00000615146 484 ntBASIC4.88□□□□□ -1.63
LIG3P49916 ALG13-230ENST00000623189 458 ntTSL 3 BASIC4.88□□□□□ -1.63
LIG3P49916 CR381572.2-201ENST00000624852 397 ntBASIC4.88□□□□□ -1.63
LIG3P49916 AC109462.4-201ENST00000637882 581 ntTSL 5 BASIC4.88□□□□□ -1.63
LIG3P49916 C12orf60-201ENST00000330828 1684 ntAPPRIS P1 TSL 1 (best) BASIC4.88□□□□□ -1.63
LIG3P49916 PNPT1P2-201ENST00000456768 2050 ntBASIC4.88□□□□□ -1.63
LIG3P49916 RPAP2-203ENST00000610020 16993 ntAPPRIS P1 TSL 1 (best) BASIC4.88□□□□□ -1.63
LIG3P49916 ERICH3-AS1-202ENST00000612390 4874 ntTSL 1 (best) BASIC4.88□□□□□ -1.63
LIG3P49916 PCDH11X-205ENST00000373094 9179 ntAPPRIS P4 TSL 1 (best) BASIC4.88□□□□□ -1.63
LIG3P49916 SYTL2-217ENST00000528231 3536 ntAPPRIS ALT1 TSL 1 (best) BASIC4.88□□□□□ -1.63
LIG3P49916 TMEM71-202ENST00000377901 1861 ntAPPRIS ALT2 TSL 1 (best) BASIC4.88□□□□□ -1.63
LIG3P49916 SDAD1P2-201ENST00000441308 2028 ntBASIC4.87□□□□□ -1.63
LIG3P49916 NUP205-201ENST00000285968 6266 ntAPPRIS P1 TSL 1 (best) BASIC4.87□□□□□ -1.63
LIG3P49916 FAP-214ENST00000627638 2569 ntAPPRIS ALT1 TSL 5 BASIC4.87□□□□□ -1.63
LIG3P49916 GYPA-202ENST00000360771 2659 ntAPPRIS P3 TSL 1 (best) BASIC4.87□□□□□ -1.63
LIG3P49916 MTND5P30-201ENST00000452896 1731 ntBASIC4.87□□□□□ -1.63
LIG3P49916 MGAT4A-204ENST00000414521 3709 ntTSL 2 BASIC4.87□□□□□ -1.63
LIG3P49916 RNU6-1303P-201ENST00000364841 107 ntBASIC4.87□□□□□ -1.63
LIG3P49916 OR51A4-201ENST00000380373 1002 ntAPPRIS P1 BASIC4.87□□□□□ -1.63
LIG3P49916 MIR93-201ENST00000385024 80 ntBASIC4.87□□□□□ -1.63
LIG3P49916 AC006369.1-201ENST00000419425 548 ntTSL 3 BASIC4.87□□□□□ -1.63
LIG3P49916 RPS12P23-201ENST00000419579 400 ntBASIC4.87□□□□□ -1.63
LIG3P49916 UBE2V1P4-201ENST00000425374 344 ntBASIC4.87□□□□□ -1.63
LIG3P49916 USMG5P1-201ENST00000425964 177 ntBASIC4.87□□□□□ -1.63
LIG3P49916 AL449043.1-202ENST00000427318 582 ntTSL 1 (best) BASIC4.87□□□□□ -1.63
LIG3P49916 AC009478.1-201ENST00000429816 562 ntTSL 3 BASIC4.87□□□□□ -1.63
LIG3P49916 AL445488.1-202ENST00000430623 545 ntTSL 3 BASIC4.87□□□□□ -1.63
LIG3P49916 AC073063.1-201ENST00000434352 607 ntBASIC4.87□□□□□ -1.63
LIG3P49916 SNRPEP4-201ENST00000435815 279 ntBASIC4.87□□□□□ -1.63
LIG3P49916 AC069540.2-201ENST00000441776 351 ntTSL 3 BASIC4.87□□□□□ -1.63
LIG3P49916 IPO7P1-201ENST00000442031 636 ntBASIC4.87□□□□□ -1.63
LIG3P49916 HSFY6P-201ENST00000445573 403 ntBASIC4.87□□□□□ -1.63
LIG3P49916 RPL21P23-201ENST00000446654 460 ntBASIC4.87□□□□□ -1.63
LIG3P49916 RPS15AP34-201ENST00000487776 387 ntBASIC4.87□□□□□ -1.63
LIG3P49916 AC026979.1-201ENST00000492525 396 ntBASIC4.87□□□□□ -1.63
LIG3P49916 CDH12P4-201ENST00000517835 295 ntBASIC4.87□□□□□ -1.63
LIG3P49916 CDH12P3-201ENST00000517935 295 ntBASIC4.87□□□□□ -1.63
LIG3P49916 CDH12P1-201ENST00000518435 295 ntBASIC4.87□□□□□ -1.63
LIG3P49916 AC091564.3-201ENST00000527398 429 ntTSL 3 BASIC4.87□□□□□ -1.63
LIG3P49916 SNRPGP16-201ENST00000533275 226 ntBASIC4.87□□□□□ -1.63
LIG3P49916 AC068789.1-201ENST00000547942 577 ntTSL 2 BASIC4.87□□□□□ -1.63
LIG3P49916 AC127894.1-201ENST00000548266 851 ntTSL 3 BASIC4.87□□□□□ -1.63
LIG3P49916 AL117187.1-201ENST00000555482 181 ntBASIC4.87□□□□□ -1.63
LIG3P49916 AL049839.1-201ENST00000556151 657 ntBASIC4.87□□□□□ -1.63
LIG3P49916 AC092718.6-202ENST00000563072 408 ntTSL 2 BASIC4.87□□□□□ -1.63
LIG3P49916 AC010653.1-201ENST00000571108 881 ntBASIC4.87□□□□□ -1.63
LIG3P49916 MIR548AC-201ENST00000585049 88 ntBASIC4.87□□□□□ -1.63
LIG3P49916 C7orf77-201ENST00000616258 548 ntAPPRIS P1 TSL 1 (best) BASIC4.87□□□□□ -1.63
LIG3P49916 AC131238.1-201ENST00000617135 328 ntBASIC4.87□□□□□ -1.63
LIG3P49916 AL022401.1-201ENST00000619498 108 ntBASIC4.87□□□□□ -1.63
LIG3P49916 MUC7-203ENST00000456088 2479 ntAPPRIS P2 TSL 4 BASIC4.87□□□□□ -1.63
LIG3P49916 AL136537.2-201ENST00000562049 2471 ntTSL 1 (best) BASIC4.87□□□□□ -1.63
LIG3P49916 UEVLD-208ENST00000535484 1963 ntTSL 2 BASIC4.87□□□□□ -1.63
Retrieved 100 of 98,524 protein–RNA pairs in 127.6 ms