Protein–RNA interactions for Protein: O75351

VPS4B, Vacuolar protein sorting-associated protein 4B, humanhuman

Predictions only

Length 444 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4BO75351 RNA5SP519-201ENST00000516480 119 ntBASIC3.97□□□□□ -1.77
VPS4BO75351 SNORA31.22-201ENST00000517204 135 ntBASIC3.97□□□□□ -1.77
VPS4BO75351 SUMO2P20-201ENST00000520803 283 ntBASIC3.97□□□□□ -1.77
VPS4BO75351 AC021736.1-201ENST00000521143 563 ntTSL 4 BASIC3.97□□□□□ -1.77
VPS4BO75351 LINC02277-201ENST00000553386 453 ntTSL 2 BASIC3.97□□□□□ -1.77
VPS4BO75351 LINC02328-203ENST00000557195 682 ntTSL 3 BASIC3.97□□□□□ -1.77
VPS4BO75351 AC129492.2-201ENST00000577807 517 ntTSL 3 BASIC3.97□□□□□ -1.77
VPS4BO75351 AC243829.5-201ENST00000578447 247 ntTSL 5 BASIC3.97□□□□□ -1.77
VPS4BO75351 RPL26-207ENST00000583011 524 ntAPPRIS P1 TSL 3 BASIC3.97□□□□□ -1.77
VPS4BO75351 AC006116.10-201ENST00000591836 581 ntBASIC3.97□□□□□ -1.77
VPS4BO75351 AL670379.6-201ENST00000603753 252 ntBASIC3.97□□□□□ -1.77
VPS4BO75351 AL670379.11-201ENST00000604059 253 ntBASIC3.97□□□□□ -1.77
VPS4BO75351 AC008162.1-201ENST00000604718 254 ntBASIC3.97□□□□□ -1.77
VPS4BO75351 AL670379.1-201ENST00000604752 252 ntBASIC3.97□□□□□ -1.77
VPS4BO75351 AL670379.5-201ENST00000605253 252 ntBASIC3.97□□□□□ -1.77
VPS4BO75351 AL670379.12-201ENST00000605291 253 ntBASIC3.97□□□□□ -1.77
VPS4BO75351 AL670379.8-201ENST00000605353 252 ntBASIC3.97□□□□□ -1.77
VPS4BO75351 HMGB1P50-201ENST00000605814 607 ntBASIC3.97□□□□□ -1.77
VPS4BO75351 AL670379.7-201ENST00000605823 252 ntBASIC3.97□□□□□ -1.77
VPS4BO75351 MIR6867-201ENST00000610636 67 ntBASIC3.97□□□□□ -1.77
VPS4BO75351 CR392039.5-201ENST00000623201 510 ntBASIC3.97□□□□□ -1.77
VPS4BO75351 AC011155.2-201ENST00000623202 216 ntBASIC3.97□□□□□ -1.77
VPS4BO75351 NLGN1-201ENST00000361589 5092 ntAPPRIS P1 TSL 1 (best) BASIC3.97□□□□□ -1.77
VPS4BO75351 STEAP4-202ENST00000380079 9988 ntAPPRIS P1 TSL 1 (best) BASIC3.97□□□□□ -1.77
VPS4BO75351 PARP8-211ENST00000505554 3825 ntTSL 5 BASIC3.97□□□□□ -1.77
VPS4BO75351 ZNF616-201ENST00000330123 2563 ntTSL 1 (best) BASIC3.97□□□□□ -1.77
VPS4BO75351 PUS7L-207ENST00000551923 3313 ntAPPRIS P1 TSL 1 (best) BASIC3.96□□□□□ -1.77
VPS4BO75351 PTER-201ENST00000298942 3448 ntTSL 5 BASIC3.96□□□□□ -1.77
VPS4BO75351 ST7-221ENST00000465133 2155 ntTSL 5 BASIC3.96□□□□□ -1.78
VPS4BO75351 LINC01021-204ENST00000512067 1610 ntTSL 1 (best) BASIC3.96□□□□□ -1.78
VPS4BO75351 NXPE1-204ENST00000536271 2289 ntTSL 1 (best) BASIC3.96□□□□□ -1.78
VPS4BO75351 GMNC-201ENST00000442080 3422 ntAPPRIS P1 TSL 5 BASIC3.96□□□□□ -1.78
VPS4BO75351 AC007685.1-201ENST00000329806 452 ntBASIC3.96□□□□□ -1.78
VPS4BO75351 RNU6-845P-201ENST00000362578 103 ntBASIC3.96□□□□□ -1.78
VPS4BO75351 RNU6-552P-201ENST00000362869 119 ntBASIC3.96□□□□□ -1.78
VPS4BO75351 RNU6-179P-201ENST00000363350 107 ntBASIC3.96□□□□□ -1.78
VPS4BO75351 RNU6-188P-201ENST00000364207 107 ntBASIC3.96□□□□□ -1.78
VPS4BO75351 SNORA62.1-201ENST00000364287 154 ntBASIC3.96□□□□□ -1.78
VPS4BO75351 SNORA23-201ENST00000365128 182 ntBASIC3.96□□□□□ -1.78
VPS4BO75351 TCEAL7-202ENST00000372666 852 ntAPPRIS P1 TSL 2 BASIC3.96□□□□□ -1.78
VPS4BO75351 RNU6-767P-201ENST00000384132 107 ntBASIC3.96□□□□□ -1.78
VPS4BO75351 SNORA24.1-201ENST00000384401 135 ntBASIC3.96□□□□□ -1.78
VPS4BO75351 RNU1-89P-201ENST00000384592 164 ntBASIC3.96□□□□□ -1.78
VPS4BO75351 TRAJ7-201ENST00000390530 59 ntAPPRIS P1 BASIC3.96□□□□□ -1.78
VPS4BO75351 AC114491.1-201ENST00000416095 246 ntBASIC3.96□□□□□ -1.78
VPS4BO75351 AC133106.1-201ENST00000419029 397 ntTSL 3 BASIC3.96□□□□□ -1.78
VPS4BO75351 RAC1P6-201ENST00000423911 575 ntBASIC3.96□□□□□ -1.78
VPS4BO75351 MTND4P28-201ENST00000426217 387 ntBASIC3.96□□□□□ -1.78
VPS4BO75351 AC244035.3-201ENST00000428399 271 ntTSL 2 BASIC3.96□□□□□ -1.78
VPS4BO75351 AC018644.1-201ENST00000429934 551 ntBASIC3.96□□□□□ -1.78
VPS4BO75351 HCG2040054-201ENST00000435331 434 ntTSL 3 BASIC3.96□□□□□ -1.78
VPS4BO75351 AF228730.2-201ENST00000438784 848 ntBASIC3.96□□□□□ -1.78
VPS4BO75351 LINC00630-205ENST00000440496 2101 ntTSL 1 (best) BASIC3.96□□□□□ -1.78
VPS4BO75351 AC018359.1-201ENST00000442567 574 ntTSL 4 BASIC3.96□□□□□ -1.78
VPS4BO75351 AL121871.1-201ENST00000443413 436 ntBASIC3.96□□□□□ -1.78
VPS4BO75351 AL118520.1-201ENST00000450770 291 ntBASIC3.96□□□□□ -1.78
VPS4BO75351 ELOCP23-201ENST00000452014 332 ntBASIC3.96□□□□□ -1.78
VPS4BO75351 HMGN2P26-201ENST00000463169 339 ntBASIC3.96□□□□□ -1.78
VPS4BO75351 BCL2L15-204ENST00000471267 267 ntTSL 1 (best) BASIC3.96□□□□□ -1.78
VPS4BO75351 RPL23AP11-201ENST00000475260 469 ntBASIC3.96□□□□□ -1.78
VPS4BO75351 RN7SL432P-201ENST00000484057 298 ntBASIC3.96□□□□□ -1.78
VPS4BO75351 RN7SL691P-201ENST00000494487 301 ntBASIC3.96□□□□□ -1.78
VPS4BO75351 AC097372.3-201ENST00000503593 522 ntTSL 3 BASIC3.96□□□□□ -1.78
VPS4BO75351 SCARNA13-201ENST00000516672 275 ntBASIC3.96□□□□□ -1.78
VPS4BO75351 AC104232.2-201ENST00000519680 769 ntTSL 5 BASIC3.96□□□□□ -1.78
VPS4BO75351 AC079598.1-201ENST00000548691 554 ntTSL 4 BASIC3.96□□□□□ -1.78
VPS4BO75351 MIR4703-201ENST00000577728 79 ntBASIC3.96□□□□□ -1.78
VPS4BO75351 AC011712.1-201ENST00000588959 234 ntBASIC3.96□□□□□ -1.78
VPS4BO75351 LINC01515-204ENST00000595269 402 ntTSL 5 BASIC3.96□□□□□ -1.78
VPS4BO75351 MIR486-1-201ENST00000612171 68 ntBASIC3.96□□□□□ -1.78
VPS4BO75351 AC009233.1-201ENST00000616477 371 ntBASIC3.96□□□□□ -1.78
VPS4BO75351 AC079684.1-201ENST00000621405 437 ntBASIC3.96□□□□□ -1.78
VPS4BO75351 AC110801.1-201ENST00000623590 212 ntBASIC3.96□□□□□ -1.78
VPS4BO75351 LINC01232-201ENST00000625254 836 ntTSL 5 BASIC3.96□□□□□ -1.78
VPS4BO75351 PTP4A2-220ENST00000627328 615 ntTSL 5 BASIC3.96□□□□□ -1.78
VPS4BO75351 BX088723.1-201ENST00000637785 708 ntTSL 5 BASIC3.96□□□□□ -1.78
VPS4BO75351 CCSER1-201ENST00000432775 3927 ntTSL 1 (best) BASIC3.96□□□□□ -1.78
VPS4BO75351 MGAT4A-204ENST00000414521 3709 ntTSL 2 BASIC3.96□□□□□ -1.78
VPS4BO75351 AC103710.2-202ENST00000641454 2853 ntBASIC3.96□□□□□ -1.78
VPS4BO75351 ASNSP3-201ENST00000451989 1306 ntBASIC3.95□□□□□ -1.78
VPS4BO75351 HEATR5B-201ENST00000233099 6905 ntAPPRIS P1 TSL 1 (best) BASIC3.95□□□□□ -1.78
VPS4BO75351 TAB3P1-202ENST00000452645 1634 ntBASIC3.95□□□□□ -1.78
VPS4BO75351 ENPP3-202ENST00000358229 3026 ntTSL 1 (best) BASIC3.95□□□□□ -1.78
VPS4BO75351 GCSAML-203ENST00000366491 4130 ntAPPRIS ALT2 TSL 2 BASIC3.95□□□□□ -1.78
VPS4BO75351 NDUFAF4-201ENST00000316149 2399 ntAPPRIS P1 TSL 1 (best) BASIC3.95□□□□□ -1.78
VPS4BO75351 GPBP1-201ENST00000264779 1786 ntAPPRIS ALT2 TSL 1 (best) BASIC3.95□□□□□ -1.78
VPS4BO75351 SLC25A46-206ENST00000509432 1596 ntTSL 2 BASIC3.95□□□□□ -1.78
VPS4BO75351 XCL1-201ENST00000367818 1367 ntAPPRIS P1 TSL 1 (best) BASIC3.95□□□□□ -1.78
VPS4BO75351 Y_RNA.11-201ENST00000362375 109 ntBASIC3.95□□□□□ -1.78
VPS4BO75351 SNORA71.3-201ENST00000362582 128 ntBASIC3.95□□□□□ -1.78
VPS4BO75351 SNORD115-7-201ENST00000365306 82 ntBASIC3.95□□□□□ -1.78
VPS4BO75351 RNU6-629P-201ENST00000384061 103 ntBASIC3.95□□□□□ -1.78
VPS4BO75351 RNU6-1029P-201ENST00000384109 107 ntBASIC3.95□□□□□ -1.78
VPS4BO75351 MIR483-201ENST00000385070 76 ntBASIC3.95□□□□□ -1.78
VPS4BO75351 SOD2P1-201ENST00000396543 562 ntBASIC3.95□□□□□ -1.78
VPS4BO75351 OPRPN-201ENST00000399575 1040 ntAPPRIS P1 TSL 1 (best) BASIC3.95□□□□□ -1.78
VPS4BO75351 RPL21P65-201ENST00000406094 466 ntBASIC3.95□□□□□ -1.78
VPS4BO75351 RPL7AP73-201ENST00000413490 353 ntBASIC3.95□□□□□ -1.78
VPS4BO75351 AC005482.1-201ENST00000420758 575 ntTSL 4 BASIC3.95□□□□□ -1.78
VPS4BO75351 AP003025.1-201ENST00000421650 149 ntTSL 1 (best) BASIC3.95□□□□□ -1.78
Retrieved 100 of 98,524 protein–RNA pairs in 78.9 ms