Protein–RNA interactions for Protein: Q8NDQ6

ZNF540, Zinc finger protein 540, humanhuman

Predictions only

Length 660 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ZNF540Q8NDQ6 MTCO2P2-201ENST00000591258 225 ntBASIC2.78□□□□□ -1.96
ZNF540Q8NDQ6 ZNF28-207ENST00000594602 684 ntTSL 5 BASIC2.78□□□□□ -1.96
ZNF540Q8NDQ6 RPP40P2-201ENST00000603596 712 ntBASIC2.78□□□□□ -1.96
ZNF540Q8NDQ6 AL357094.1-201ENST00000603845 844 ntBASIC2.78□□□□□ -1.96
ZNF540Q8NDQ6 AC136601.2-201ENST00000604356 474 ntBASIC2.78□□□□□ -1.96
ZNF540Q8NDQ6 AL139344.1-201ENST00000605228 195 ntBASIC2.78□□□□□ -1.96
ZNF540Q8NDQ6 AC110609.1-201ENST00000608228 303 ntTSL 3 BASIC2.78□□□□□ -1.96
ZNF540Q8NDQ6 AC063944.3-201ENST00000609969 533 ntBASIC2.78□□□□□ -1.96
ZNF540Q8NDQ6 IGKV1D-33-202ENST00000611734 324 ntAPPRIS ALT2 TSL 5 BASIC2.78□□□□□ -1.96
ZNF540Q8NDQ6 AC107871.2-201ENST00000612894 502 ntBASIC2.78□□□□□ -1.96
ZNF540Q8NDQ6 SMAD5-AS1_2.1-201ENST00000617906 131 ntBASIC2.78□□□□□ -1.96
ZNF540Q8NDQ6 MIR4509-1-201ENST00000618224 94 ntBASIC2.78□□□□□ -1.96
ZNF540Q8NDQ6 AL161782.1-201ENST00000622930 586 ntTSL 3 BASIC2.78□□□□□ -1.96
ZNF540Q8NDQ6 EFR3A-202ENST00000519656 5247 ntTSL 1 (best) BASIC2.78□□□□□ -1.96
ZNF540Q8NDQ6 ZMYM2-203ENST00000382874 10139 ntAPPRIS P1 TSL 1 (best) BASIC2.78□□□□□ -1.96
ZNF540Q8NDQ6 AC009902.3-201ENST00000606235 2172 ntBASIC2.78□□□□□ -1.96
ZNF540Q8NDQ6 TIGD2-201ENST00000317005 2083 ntAPPRIS P1 BASIC2.77□□□□□ -1.97
ZNF540Q8NDQ6 ECT2-211ENST00000441497 2825 ntAPPRIS P2 TSL 1 (best) BASIC2.77□□□□□ -1.97
ZNF540Q8NDQ6 PSG8-202ENST00000401467 1686 ntTSL 5 BASIC2.77□□□□□ -1.97
ZNF540Q8NDQ6 CHD9-218ENST00000566029 13110 ntAPPRIS P1 TSL 1 (best) BASIC2.77□□□□□ -1.97
ZNF540Q8NDQ6 SPRR2E-201ENST00000368750 678 ntAPPRIS P1 TSL 1 (best) BASIC2.77□□□□□ -1.97
ZNF540Q8NDQ6 AC023141.4-201ENST00000412031 328 ntBASIC2.77□□□□□ -1.97
ZNF540Q8NDQ6 ACTR3BP6-201ENST00000422332 1241 ntBASIC2.77□□□□□ -1.97
ZNF540Q8NDQ6 NANOGP5-201ENST00000424456 877 ntBASIC2.77□□□□□ -1.97
ZNF540Q8NDQ6 USP9YP11-201ENST00000427537 717 ntBASIC2.77□□□□□ -1.97
ZNF540Q8NDQ6 AC114808.2-201ENST00000428335 536 ntTSL 4 BASIC2.77□□□□□ -1.97
ZNF540Q8NDQ6 AL359878.2-201ENST00000435531 407 ntTSL 3 BASIC2.77□□□□□ -1.97
ZNF540Q8NDQ6 AC007327.1-201ENST00000447461 264 ntBASIC2.77□□□□□ -1.97
ZNF540Q8NDQ6 AL356270.1-201ENST00000456587 522 ntTSL 3 BASIC2.77□□□□□ -1.97
ZNF540Q8NDQ6 AL139824.2-201ENST00000458731 1095 ntBASIC2.77□□□□□ -1.97
ZNF540Q8NDQ6 AC092919.1-201ENST00000467896 229 ntTSL 2 BASIC2.77□□□□□ -1.97
ZNF540Q8NDQ6 RPL23AP11-201ENST00000475260 469 ntBASIC2.77□□□□□ -1.97
ZNF540Q8NDQ6 RN7SL504P-201ENST00000494496 287 ntBASIC2.77□□□□□ -1.97
ZNF540Q8NDQ6 AC021678.1-201ENST00000505195 936 ntBASIC2.77□□□□□ -1.97
ZNF540Q8NDQ6 AC008948.1-201ENST00000506058 325 ntTSL 2 BASIC2.77□□□□□ -1.97
ZNF540Q8NDQ6 AC018752.1-201ENST00000507813 206 ntTSL 5 BASIC2.77□□□□□ -1.97
ZNF540Q8NDQ6 LINC01333-201ENST00000508083 724 ntTSL 1 (best) BASIC2.77□□□□□ -1.97
ZNF540Q8NDQ6 AC008871.1-201ENST00000510935 398 ntTSL 3 BASIC2.77□□□□□ -1.97
ZNF540Q8NDQ6 AC109927.1-202ENST00000511951 282 ntTSL 3 BASIC2.77□□□□□ -1.97
ZNF540Q8NDQ6 RNY4P37-201ENST00000516225 96 ntBASIC2.77□□□□□ -1.97
ZNF540Q8NDQ6 RNA5SP76-201ENST00000516277 87 ntBASIC2.77□□□□□ -1.97
ZNF540Q8NDQ6 RN7SKP265-201ENST00000516448 223 ntBASIC2.77□□□□□ -1.97
ZNF540Q8NDQ6 AC026991.1-201ENST00000520815 463 ntTSL 3 BASIC2.77□□□□□ -1.97
ZNF540Q8NDQ6 AC124657.1-201ENST00000527819 429 ntTSL 3 BASIC2.77□□□□□ -1.97
ZNF540Q8NDQ6 CD44-AS1-201ENST00000528869 587 ntTSL 4 BASIC2.77□□□□□ -1.97
ZNF540Q8NDQ6 NACAP3-201ENST00000552100 481 ntBASIC2.77□□□□□ -1.97
ZNF540Q8NDQ6 FAM96A-206ENST00000559950 561 ntTSL 2 BASIC2.77□□□□□ -1.97
ZNF540Q8NDQ6 AC044798.1-201ENST00000565146 418 ntTSL 5 BASIC2.77□□□□□ -1.97
ZNF540Q8NDQ6 AC009163.5-201ENST00000575421 637 ntBASIC2.77□□□□□ -1.97
ZNF540Q8NDQ6 AC007673.1-201ENST00000590604 1100 ntTSL 5 BASIC2.77□□□□□ -1.97
ZNF540Q8NDQ6 AC023043.3-201ENST00000593113 385 ntBASIC2.77□□□□□ -1.97
ZNF540Q8NDQ6 AL450336.1-201ENST00000605180 586 ntBASIC2.77□□□□□ -1.97
ZNF540Q8NDQ6 AC013244.3-201ENST00000605614 388 ntBASIC2.77□□□□□ -1.97
ZNF540Q8NDQ6 AC007563.2-202ENST00000607591 394 ntTSL 3 BASIC2.77□□□□□ -1.97
ZNF540Q8NDQ6 AL020991.1-201ENST00000612314 373 ntBASIC2.77□□□□□ -1.97
ZNF540Q8NDQ6 TUG1_2.1-201ENST00000614234 87 ntBASIC2.77□□□□□ -1.97
ZNF540Q8NDQ6 AL121895.2-201ENST00000619558 447 ntBASIC2.77□□□□□ -1.97
ZNF540Q8NDQ6 AC109809.1-201ENST00000619665 545 ntBASIC2.77□□□□□ -1.97
ZNF540Q8NDQ6 FO624990.1-201ENST00000636373 85 ntBASIC2.77□□□□□ -1.97
ZNF540Q8NDQ6 AC006927.4-201ENST00000639187 543 ntBASIC2.77□□□□□ -1.97
ZNF540Q8NDQ6 NEBL-202ENST00000377122 9216 ntTSL 1 (best) BASIC2.77□□□□□ -1.97
ZNF540Q8NDQ6 AC009487.2-201ENST00000420969 6821 ntBASIC2.77□□□□□ -1.97
ZNF540Q8NDQ6 AK9-203ENST00000368948 2478 ntTSL 5 BASIC2.77□□□□□ -1.97
ZNF540Q8NDQ6 ZNF833P-201ENST00000424938 1494 ntBASIC2.77□□□□□ -1.97
ZNF540Q8NDQ6 WDR3-201ENST00000349139 9974 ntAPPRIS P1 TSL 1 (best) BASIC2.76□□□□□ -1.97
ZNF540Q8NDQ6 EYS-202ENST00000342421 2168 ntTSL 1 (best) BASIC2.76□□□□□ -1.97
ZNF540Q8NDQ6 RPL9P7-201ENST00000330965 580 ntBASIC2.76□□□□□ -1.97
ZNF540Q8NDQ6 RNU1-140P-201ENST00000365040 165 ntBASIC2.76□□□□□ -1.97
ZNF540Q8NDQ6 Y_RNA.408-201ENST00000383987 102 ntBASIC2.76□□□□□ -1.97
ZNF540Q8NDQ6 RNU6-1083P-201ENST00000384022 107 ntBASIC2.76□□□□□ -1.97
ZNF540Q8NDQ6 MIR128-1-201ENST00000384921 82 ntBASIC2.76□□□□□ -1.97
ZNF540Q8NDQ6 RNU6-750P-201ENST00000390946 107 ntBASIC2.76□□□□□ -1.97
ZNF540Q8NDQ6 RNU6-1242P-201ENST00000391052 103 ntBASIC2.76□□□□□ -1.97
ZNF540Q8NDQ6 AL138885.1-201ENST00000405921 675 ntBASIC2.76□□□□□ -1.97
ZNF540Q8NDQ6 C1D-204ENST00000410067 736 ntAPPRIS P1 TSL 1 (best) BASIC2.76□□□□□ -1.97
ZNF540Q8NDQ6 RPL17P12-201ENST00000413391 526 ntBASIC2.76□□□□□ -1.97
ZNF540Q8NDQ6 AC093157.2-201ENST00000414686 671 ntTSL 5 BASIC2.76□□□□□ -1.97
ZNF540Q8NDQ6 AL161909.2-201ENST00000417577 409 ntTSL 5 BASIC2.76□□□□□ -1.97
ZNF540Q8NDQ6 B3GALNT1P1-201ENST00000420569 975 ntBASIC2.76□□□□□ -1.97
ZNF540Q8NDQ6 AL953862.1-201ENST00000423016 168 ntBASIC2.76□□□□□ -1.97
ZNF540Q8NDQ6 HMGB1P9-201ENST00000429856 646 ntBASIC2.76□□□□□ -1.97
ZNF540Q8NDQ6 AL360169.1-201ENST00000435116 143 ntTSL 5 BASIC2.76□□□□□ -1.97
ZNF540Q8NDQ6 AC024908.1-202ENST00000441907 764 ntTSL 2 BASIC2.76□□□□□ -1.97
ZNF540Q8NDQ6 KCNQ5-IT1-201ENST00000445310 563 ntTSL 2 BASIC2.76□□□□□ -1.97
ZNF540Q8NDQ6 AL357793.2-201ENST00000447056 850 ntTSL 3 BASIC2.76□□□□□ -1.97
ZNF540Q8NDQ6 PAXBP1P1-201ENST00000449315 447 ntBASIC2.76□□□□□ -1.97
ZNF540Q8NDQ6 AC013267.1-201ENST00000458227 267 ntBASIC2.76□□□□□ -1.97
ZNF540Q8NDQ6 MTND1P16-201ENST00000465177 898 ntBASIC2.76□□□□□ -1.97
ZNF540Q8NDQ6 AC107626.1-201ENST00000471084 183 ntBASIC2.76□□□□□ -1.97
ZNF540Q8NDQ6 AP001025.2-201ENST00000490908 477 ntBASIC2.76□□□□□ -1.97
ZNF540Q8NDQ6 EIF4EP3-201ENST00000498782 656 ntBASIC2.76□□□□□ -1.97
ZNF540Q8NDQ6 RNU5F-8P-201ENST00000515941 111 ntBASIC2.76□□□□□ -1.97
ZNF540Q8NDQ6 ABBA01006766.1-201ENST00000584728 294 ntBASIC2.76□□□□□ -1.97
ZNF540Q8NDQ6 TPMTP1-201ENST00000592307 737 ntBASIC2.76□□□□□ -1.97
ZNF540Q8NDQ6 AC009464.1-201ENST00000615731 469 ntBASIC2.76□□□□□ -1.97
ZNF540Q8NDQ6 AC006386.1-201ENST00000619436 415 ntBASIC2.76□□□□□ -1.97
ZNF540Q8NDQ6 Z99129.2-201ENST00000619967 314 ntBASIC2.76□□□□□ -1.97
ZNF540Q8NDQ6 AC011124.1-201ENST00000521221 1762 ntTSL 2 BASIC2.76□□□□□ -1.97
ZNF540Q8NDQ6 MCF2-204ENST00000414978 3813 ntAPPRIS ALT2 TSL 5 BASIC2.76□□□□□ -1.97
ZNF540Q8NDQ6 IL23R-205ENST00000637002 2208 ntTSL 1 (best) BASIC2.76□□□□□ -1.97
Retrieved 100 of 98,524 protein–RNA pairs in 147.1 ms