Protein–RNA interactions for Protein: P51956

NEK3, Serine/threonine-protein kinase Nek3, humanhuman

Predictions only

Length 506 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NEK3P51956 AC098848.2-201ENST00000588023 330 ntBASIC3.94□□□□□ -1.78
NEK3P51956 AC007363.1-201ENST00000604736 620 ntBASIC3.94□□□□□ -1.78
NEK3P51956 AL136363.1-201ENST00000605349 337 ntBASIC3.94□□□□□ -1.78
NEK3P51956 AC007619.2-201ENST00000605743 379 ntBASIC3.94□□□□□ -1.78
NEK3P51956 DPY19L1-208ENST00000612226 607 ntTSL 1 (best) BASIC3.94□□□□□ -1.78
NEK3P51956 AC015540.1-201ENST00000615828 501 ntBASIC3.94□□□□□ -1.78
NEK3P51956 AL391261.4-201ENST00000616012 481 ntBASIC3.94□□□□□ -1.78
NEK3P51956 U7.8-201ENST00000619968 63 ntBASIC3.94□□□□□ -1.78
NEK3P51956 FP236240.3-201ENST00000623061 327 ntBASIC3.94□□□□□ -1.78
NEK3P51956 SLC30A6-204ENST00000406369 4589 ntTSL 1 (best) BASIC3.94□□□□□ -1.78
NEK3P51956 VBP1-204ENST00000625964 1547 ntTSL 5 BASIC3.94□□□□□ -1.78
NEK3P51956 METTL18-201ENST00000303469 1426 ntAPPRIS P1 TSL 1 (best) BASIC3.94□□□□□ -1.78
NEK3P51956 AC006504.1-201ENST00000562493 3666 ntBASIC3.93□□□□□ -1.78
NEK3P51956 CFAP44-202ENST00000393845 7069 ntAPPRIS ALT2 TSL 5 BASIC3.93□□□□□ -1.78
NEK3P51956 ADGRL2-211ENST00000370730 6173 ntTSL 5 BASIC3.93□□□□□ -1.78
NEK3P51956 RAPGEF6-210ENST00000512052 3535 ntTSL 2 BASIC3.93□□□□□ -1.78
NEK3P51956 MTND5P17-201ENST00000418405 1603 ntBASIC3.93□□□□□ -1.78
NEK3P51956 EVI2A-201ENST00000247270 1860 ntAPPRIS P3 TSL 2 BASIC3.93□□□□□ -1.78
NEK3P51956 Y_RNA.245-201ENST00000364493 95 ntBASIC3.93□□□□□ -1.78
NEK3P51956 Y_RNA.296-201ENST00000364930 108 ntBASIC3.93□□□□□ -1.78
NEK3P51956 SNORA62.3-201ENST00000365110 153 ntBASIC3.93□□□□□ -1.78
NEK3P51956 RNU6-946P-201ENST00000383878 107 ntBASIC3.93□□□□□ -1.78
NEK3P51956 RNU6-259P-201ENST00000383999 107 ntBASIC3.93□□□□□ -1.78
NEK3P51956 RNU6-217P-201ENST00000384164 104 ntBASIC3.93□□□□□ -1.78
NEK3P51956 RNU6-14P-201ENST00000384630 106 ntBASIC3.93□□□□□ -1.78
NEK3P51956 MIR30B-201ENST00000384850 88 ntBASIC3.93□□□□□ -1.78
NEK3P51956 IGLV5-37-201ENST00000390300 374 ntAPPRIS P1 BASIC3.93□□□□□ -1.78
NEK3P51956 HLFP1-201ENST00000402375 499 ntBASIC3.93□□□□□ -1.78
NEK3P51956 RNA5SP38-201ENST00000410750 119 ntBASIC3.93□□□□□ -1.78
NEK3P51956 RNU6-387P-201ENST00000411331 105 ntBASIC3.93□□□□□ -1.78
NEK3P51956 RPL30P2-201ENST00000414021 291 ntBASIC3.93□□□□□ -1.78
NEK3P51956 AL078645.1-201ENST00000414377 423 ntTSL 3 BASIC3.93□□□□□ -1.78
NEK3P51956 AC073311.1-201ENST00000420146 505 ntTSL 5 BASIC3.93□□□□□ -1.78
NEK3P51956 AC012498.1-201ENST00000424037 437 ntBASIC3.93□□□□□ -1.78
NEK3P51956 ZNF863P-201ENST00000426746 417 ntBASIC3.93□□□□□ -1.78
NEK3P51956 HMGB3P11-201ENST00000440127 604 ntBASIC3.93□□□□□ -1.78
NEK3P51956 AL358075.2-201ENST00000452785 339 ntTSL 2 BASIC3.93□□□□□ -1.78
NEK3P51956 AL034349.1-201ENST00000458367 549 ntTSL 5 BASIC3.93□□□□□ -1.78
NEK3P51956 SNORA84-201ENST00000459229 133 ntBASIC3.93□□□□□ -1.78
NEK3P51956 LINC02377-201ENST00000500169 450 ntTSL 3 BASIC3.93□□□□□ -1.78
NEK3P51956 MTND2P33-201ENST00000506452 1031 ntBASIC3.93□□□□□ -1.78
NEK3P51956 RNA5SP290-201ENST00000517133 127 ntBASIC3.93□□□□□ -1.78
NEK3P51956 DUXAP2-201ENST00000519198 589 ntBASIC3.93□□□□□ -1.78
NEK3P51956 AC090023.1-201ENST00000545750 443 ntTSL 3 BASIC3.93□□□□□ -1.78
NEK3P51956 G2E3-AS1-202ENST00000550118 609 ntTSL 5 BASIC3.93□□□□□ -1.78
NEK3P51956 AL163153.1-201ENST00000554223 283 ntBASIC3.93□□□□□ -1.78
NEK3P51956 AC008741.1-201ENST00000569456 510 ntTSL 3 BASIC3.93□□□□□ -1.78
NEK3P51956 ZNF562-205ENST00000587392 583 ntTSL 2 BASIC3.93□□□□□ -1.78
NEK3P51956 LINC01905-202ENST00000588139 459 ntTSL 3 BASIC3.93□□□□□ -1.78
NEK3P51956 AP005264.4-201ENST00000592203 422 ntTSL 5 BASIC3.93□□□□□ -1.78
NEK3P51956 HSPE1P7-201ENST00000604681 321 ntBASIC3.93□□□□□ -1.78
NEK3P51956 AC245389.1-201ENST00000605141 529 ntBASIC3.93□□□□□ -1.78
NEK3P51956 AL360267.1-201ENST00000607309 666 ntTSL 4 BASIC3.93□□□□□ -1.78
NEK3P51956 AC068880.5-201ENST00000624331 290 ntBASIC3.93□□□□□ -1.78
NEK3P51956 AL359740.1-201ENST00000624340 592 ntBASIC3.93□□□□□ -1.78
NEK3P51956 AC009161.2-201ENST00000624626 138 ntBASIC3.93□□□□□ -1.78
NEK3P51956 LINC01002-215ENST00000632203 314 ntTSL 5 BASIC3.93□□□□□ -1.78
NEK3P51956 AC215522.3-201ENST00000635602 354 ntTSL 5 BASIC3.93□□□□□ -1.78
NEK3P51956 MTND5P42-201ENST00000637720 498 ntBASIC3.93□□□□□ -1.78
NEK3P51956 ZGRF1-212ENST00000612287 2176 ntTSL 1 (best) BASIC3.93□□□□□ -1.78
NEK3P51956 GALNT1-201ENST00000269195 3847 ntAPPRIS P1 TSL 1 (best) BASIC3.93□□□□□ -1.78
NEK3P51956 LINC01094-203ENST00000504675 1985 ntTSL 2 BASIC3.93□□□□□ -1.78
NEK3P51956 AC005183.1-201ENST00000603687 1979 ntBASIC3.93□□□□□ -1.78
NEK3P51956 LINC00648-202ENST00000555985 2885 ntTSL 2 BASIC3.92□□□□□ -1.78
NEK3P51956 ZNF92-204ENST00000450302 2957 ntTSL 1 (best) BASIC3.92□□□□□ -1.78
NEK3P51956 Y_RNA.22-201ENST00000362492 102 ntBASIC3.92□□□□□ -1.78
NEK3P51956 PARD3-204ENST00000374768 799 ntTSL 3 BASIC3.92□□□□□ -1.78
NEK3P51956 RNU6-641P-201ENST00000384006 107 ntBASIC3.92□□□□□ -1.78
NEK3P51956 SNORA48.7-201ENST00000391302 135 ntBASIC3.92□□□□□ -1.78
NEK3P51956 RN7SKP156-201ENST00000410308 342 ntBASIC3.92□□□□□ -1.78
NEK3P51956 SNORA57.3-201ENST00000411095 141 ntBASIC3.92□□□□□ -1.78
NEK3P51956 AC008440.2-201ENST00000413496 423 ntTSL 5 BASIC3.92□□□□□ -1.78
NEK3P51956 LINC01351-201ENST00000424735 526 ntTSL 2 BASIC3.92□□□□□ -1.78
NEK3P51956 DLGAP5P1-201ENST00000430307 464 ntBASIC3.92□□□□□ -1.78
NEK3P51956 AL445584.1-201ENST00000431451 330 ntBASIC3.92□□□□□ -1.78
NEK3P51956 AC005019.2-201ENST00000434321 359 ntTSL 5 BASIC3.92□□□□□ -1.78
NEK3P51956 AC093579.1-201ENST00000439455 352 ntTSL 2 BASIC3.92□□□□□ -1.78
NEK3P51956 RANP8-201ENST00000444720 713 ntBASIC3.92□□□□□ -1.78
NEK3P51956 MTCYBP1-201ENST00000454315 1119 ntBASIC3.92□□□□□ -1.78
NEK3P51956 DCLRE1CP1-201ENST00000454630 470 ntBASIC3.92□□□□□ -1.78
NEK3P51956 RPL39P36-201ENST00000490784 156 ntBASIC3.92□□□□□ -1.78
NEK3P51956 RPL21P129-201ENST00000491732 478 ntBASIC3.92□□□□□ -1.78
NEK3P51956 AC108078.1-201ENST00000508073 725 ntBASIC3.92□□□□□ -1.78
NEK3P51956 APOOP4-201ENST00000513530 597 ntBASIC3.92□□□□□ -1.78
NEK3P51956 SMIM18-201ENST00000517349 905 ntAPPRIS P1 TSL 2 BASIC3.92□□□□□ -1.78
NEK3P51956 ALKBH3-AS1-202ENST00000527960 547 ntTSL 4 BASIC3.92□□□□□ -1.78
NEK3P51956 AP003718.1-201ENST00000529884 583 ntTSL 4 BASIC3.92□□□□□ -1.78
NEK3P51956 AC090531.1-202ENST00000548450 499 ntTSL 3 BASIC3.92□□□□□ -1.78
NEK3P51956 MIR4644-201ENST00000579929 84 ntBASIC3.92□□□□□ -1.78
NEK3P51956 AC005304.3-201ENST00000581533 511 ntTSL 3 BASIC3.92□□□□□ -1.78
NEK3P51956 LINC00907-211ENST00000601948 795 ntTSL 5 BASIC3.92□□□□□ -1.78
NEK3P51956 AC078795.2-201ENST00000602835 1252 ntBASIC3.92□□□□□ -1.78
NEK3P51956 AC098826.3-201ENST00000603823 466 ntBASIC3.92□□□□□ -1.78
NEK3P51956 AC136601.2-201ENST00000604356 474 ntBASIC3.92□□□□□ -1.78
NEK3P51956 AL022154.1-201ENST00000604698 785 ntBASIC3.92□□□□□ -1.78
NEK3P51956 BRDTP1-201ENST00000605735 677 ntBASIC3.92□□□□□ -1.78
NEK3P51956 AL592295.2-201ENST00000612578 206 ntBASIC3.92□□□□□ -1.78
NEK3P51956 AC005344.1-201ENST00000613391 459 ntBASIC3.92□□□□□ -1.78
NEK3P51956 ZNF439-201ENST00000304030 2622 ntAPPRIS P1 TSL 1 (best) BASIC3.92□□□□□ -1.78
NEK3P51956 KIAA1107-203ENST00000637221 4337 ntTSL 1 (best) BASIC3.92□□□□□ -1.78
Retrieved 100 of 98,524 protein–RNA pairs in 80.1 ms