Protein–RNA interactions for Protein: P12111

COL6A3, Collagen alpha-3(VI) chain, humanhuman

Predictions only

Length 3,177 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3P12111 CAPS2-203ENST00000393284 3430 ntAPPRIS P1 TSL 1 (best) BASIC1.23□□□□□ -2.21
COL6A3P12111 CEP57L1-223ENST00000523787 2522 ntAPPRIS ALT2 TSL 5 BASIC1.23□□□□□ -2.21
COL6A3P12111 AL445989.1-202ENST00000418943 776 ntTSL 2 BASIC1.23□□□□□ -2.21
COL6A3P12111 AL358075.1-201ENST00000450004 649 ntTSL 3 BASIC1.23□□□□□ -2.21
COL6A3P12111 AC066613.1-202ENST00000560727 630 ntTSL 5 BASIC1.23□□□□□ -2.21
COL6A3P12111 ZNF518A-210ENST00000624776 7994 ntAPPRIS P1 TSL 1 (best) BASIC1.23□□□□□ -2.21
COL6A3P12111 ZNF33CP-201ENST00000432492 2030 ntBASIC1.23□□□□□ -2.21
COL6A3P12111 ICE2P2-201ENST00000483823 2787 ntBASIC1.23□□□□□ -2.21
COL6A3P12111 S100G-201ENST00000380200 455 ntAPPRIS P1 TSL 1 (best) BASIC1.23□□□□□ -2.21
COL6A3P12111 HMGB3P31-201ENST00000413333 595 ntBASIC1.23□□□□□ -2.21
COL6A3P12111 AL158840.1-202ENST00000425754 694 ntTSL 3 BASIC1.23□□□□□ -2.21
COL6A3P12111 SUMO1P4-201ENST00000429430 302 ntBASIC1.23□□□□□ -2.21
COL6A3P12111 AC018643.1-201ENST00000445459 414 ntTSL 5 BASIC1.23□□□□□ -2.21
COL6A3P12111 LINC02198-201ENST00000504280 810 ntTSL 3 BASIC1.23□□□□□ -2.21
COL6A3P12111 LINC02109-204ENST00000602801 563 ntTSL 4 BASIC1.23□□□□□ -2.21
COL6A3P12111 AC123912.5-201ENST00000605470 343 ntBASIC1.23□□□□□ -2.21
COL6A3P12111 CADM2-AS1-201ENST00000476021 2656 ntTSL 1 (best) BASIC1.23□□□□□ -2.21
COL6A3P12111 Y_RNA.25-201ENST00000362528 102 ntBASIC1.22□□□□□ -2.21
COL6A3P12111 UBE2V1P13-201ENST00000436983 439 ntBASIC1.22□□□□□ -2.21
COL6A3P12111 ZBTB20-AS2-201ENST00000478301 372 ntTSL 2 BASIC1.22□□□□□ -2.21
COL6A3P12111 AP005435.4-201ENST00000529514 284 ntBASIC1.22□□□□□ -2.21
COL6A3P12111 AC007115.1-201ENST00000546853 234 ntBASIC1.22□□□□□ -2.21
COL6A3P12111 AC211469.2-201ENST00000605461 205 ntBASIC1.22□□□□□ -2.21
COL6A3P12111 RRAS2-211ENST00000537760 2034 ntTSL 2 BASIC1.22□□□□□ -2.21
COL6A3P12111 RNU4-52P-201ENST00000384209 138 ntBASIC1.22□□□□□ -2.21
COL6A3P12111 AC008850.1-201ENST00000427546 362 ntBASIC1.22□□□□□ -2.21
COL6A3P12111 SNRPFP2-201ENST00000440710 251 ntBASIC1.22□□□□□ -2.21
COL6A3P12111 CCDC148-202ENST00000409187 2523 ntAPPRIS P1 TSL 5 BASIC1.22□□□□□ -2.21
COL6A3P12111 MYSM1-208ENST00000622766 6020 ntTSL 1 (best) BASIC1.22□□□□□ -2.21
COL6A3P12111 Y_RNA.35-201ENST00000362601 101 ntBASIC1.22□□□□□ -2.21
COL6A3P12111 IVNS1ABP-201ENST00000367497 746 ntTSL 5 BASIC1.22□□□□□ -2.21
COL6A3P12111 AC016691.1-201ENST00000441321 413 ntBASIC1.22□□□□□ -2.21
COL6A3P12111 GOLGA5P1-201ENST00000507317 980 ntBASIC1.22□□□□□ -2.21
COL6A3P12111 AC096711.2-201ENST00000510592 454 ntTSL 5 BASIC1.22□□□□□ -2.21
COL6A3P12111 AC009229.3-201ENST00000608056 282 ntBASIC1.22□□□□□ -2.21
COL6A3P12111 LINC01085-201ENST00000502759 1984 ntTSL 2 BASIC1.22□□□□□ -2.21
COL6A3P12111 MLIP-AS1-201ENST00000434196 1534 ntTSL 2 BASIC1.22□□□□□ -2.21
COL6A3P12111 GPBP1-201ENST00000264779 1786 ntAPPRIS ALT2 TSL 1 (best) BASIC1.21□□□□□ -2.22
COL6A3P12111 Y_RNA.412-201ENST00000384001 104 ntBASIC1.21□□□□□ -2.22
COL6A3P12111 AL391839.1-201ENST00000417447 265 ntTSL 2 BASIC1.21□□□□□ -2.22
COL6A3P12111 TRAPPC2P5-201ENST00000426293 308 ntBASIC1.21□□□□□ -2.22
COL6A3P12111 SUB1-206ENST00000506237 908 ntAPPRIS P1 TSL 2 BASIC1.21□□□□□ -2.22
COL6A3P12111 AP001960.1-201ENST00000506494 658 ntBASIC1.21□□□□□ -2.22
COL6A3P12111 ACTR3BP3-201ENST00000565577 979 ntBASIC1.21□□□□□ -2.22
COL6A3P12111 MIR4714-201ENST00000580728 77 ntBASIC1.21□□□□□ -2.22
COL6A3P12111 AL512605.2-201ENST00000592972 256 ntBASIC1.21□□□□□ -2.22
COL6A3P12111 MRLN-201ENST00000414264 422 ntAPPRIS P2 TSL 1 (best) BASIC1.21□□□□□ -2.22
COL6A3P12111 OR8X1P-201ENST00000534542 869 ntBASIC1.21□□□□□ -2.22
COL6A3P12111 DUXAP9-208ENST00000622815 614 ntBASIC1.21□□□□□ -2.22
COL6A3P12111 CUL2-206ENST00000421317 2376 ntTSL 2 BASIC1.21□□□□□ -2.22
COL6A3P12111 SAMD9-201ENST00000379958 6852 ntAPPRIS P1 TSL 1 (best) BASIC1.21□□□□□ -2.22
COL6A3P12111 MIR758-201ENST00000390227 88 ntBASIC1.2□□□□□ -2.22
COL6A3P12111 AL353148.1-204ENST00000426752 477 ntTSL 5 BASIC1.2□□□□□ -2.22
COL6A3P12111 AL353612.1-201ENST00000428769 465 ntTSL 3 BASIC1.2□□□□□ -2.22
COL6A3P12111 AP000552.3-201ENST00000434730 775 ntTSL 5 BASIC1.2□□□□□ -2.22
COL6A3P12111 AC093297.2-207ENST00000505401 692 ntTSL 3 BASIC1.2□□□□□ -2.22
COL6A3P12111 NCRNA00250-201ENST00000519500 519 ntTSL 4 BASIC1.2□□□□□ -2.22
COL6A3P12111 AC026474.1-201ENST00000562422 428 ntTSL 2 BASIC1.2□□□□□ -2.22
COL6A3P12111 PWRN3-201ENST00000566797 849 ntTSL 5 BASIC1.2□□□□□ -2.22
COL6A3P12111 TTN-AS1-212ENST00000582847 1036 ntTSL 5 BASIC1.2□□□□□ -2.22
COL6A3P12111 AC006270.3-201ENST00000605967 1036 ntBASIC1.2□□□□□ -2.22
COL6A3P12111 AL390240.1-201ENST00000612950 384 ntBASIC1.2□□□□□ -2.22
COL6A3P12111 uc_338.14-201ENST00000613162 166 ntBASIC1.2□□□□□ -2.22
COL6A3P12111 Y_RNA.804-201ENST00000615262 101 ntBASIC1.2□□□□□ -2.22
COL6A3P12111 AC090517.3-201ENST00000625170 141 ntBASIC1.2□□□□□ -2.22
COL6A3P12111 CRISP3-204ENST00000433368 2205 ntAPPRIS ALT2 TSL 5 BASIC1.2□□□□□ -2.22
COL6A3P12111 ZNF965P-201ENST00000432501 817 ntBASIC1.2□□□□□ -2.22
COL6A3P12111 MTND6P13-201ENST00000443510 523 ntBASIC1.2□□□□□ -2.22
COL6A3P12111 AC114485.1-201ENST00000447916 657 ntTSL 3 BASIC1.2□□□□□ -2.22
COL6A3P12111 AL606519.1-201ENST00000458146 580 ntTSL 2 BASIC1.2□□□□□ -2.22
COL6A3P12111 AC103833.1-201ENST00000517442 172 ntBASIC1.2□□□□□ -2.22
COL6A3P12111 RNU1-23P-201ENST00000363361 144 ntBASIC1.2□□□□□ -2.22
COL6A3P12111 MIR936-201ENST00000401264 98 ntBASIC1.2□□□□□ -2.22
COL6A3P12111 AC073264.1-201ENST00000411508 416 ntBASIC1.2□□□□□ -2.22
COL6A3P12111 AC005160.1-201ENST00000432405 381 ntTSL 3 BASIC1.2□□□□□ -2.22
COL6A3P12111 AL353706.1-201ENST00000436728 494 ntBASIC1.2□□□□□ -2.22
COL6A3P12111 XKRYP6-201ENST00000440468 1116 ntBASIC1.2□□□□□ -2.22
COL6A3P12111 XKRYP3-201ENST00000442113 1116 ntBASIC1.2□□□□□ -2.22
COL6A3P12111 RPL37P25-201ENST00000507308 276 ntBASIC1.2□□□□□ -2.22
COL6A3P12111 RNU6-56P-201ENST00000516986 93 ntBASIC1.2□□□□□ -2.22
COL6A3P12111 OR5AQ1P-201ENST00000527596 927 ntBASIC1.2□□□□□ -2.22
COL6A3P12111 FAM46D-201ENST00000308293 3011 ntAPPRIS P1 TSL 1 (best) BASIC1.2□□□□□ -2.22
COL6A3P12111 ZNF33BP1-201ENST00000452497 1834 ntBASIC1.2□□□□□ -2.22
COL6A3P12111 PSMA2P3-201ENST00000429685 675 ntBASIC1.19□□□□□ -2.22
COL6A3P12111 AC244035.1-201ENST00000430042 390 ntBASIC1.19□□□□□ -2.22
COL6A3P12111 AP000926.1-201ENST00000479573 241 ntBASIC1.19□□□□□ -2.22
COL6A3P12111 AC068338.1-201ENST00000565567 176 ntBASIC1.19□□□□□ -2.22
COL6A3P12111 AC233266.2-201ENST00000567067 528 ntBASIC1.19□□□□□ -2.22
COL6A3P12111 MIR5694-201ENST00000581190 76 ntBASIC1.19□□□□□ -2.22
COL6A3P12111 AP002907.1-201ENST00000606361 1430 ntBASIC1.19□□□□□ -2.22
COL6A3P12111 SNORA31.16-201ENST00000516773 139 ntBASIC1.19□□□□□ -2.22
COL6A3P12111 AC092490.2-202ENST00000544922 462 ntTSL 3 BASIC1.19□□□□□ -2.22
COL6A3P12111 G2E3-AS1-202ENST00000550118 609 ntTSL 5 BASIC1.19□□□□□ -2.22
COL6A3P12111 MIR4711-201ENST00000578274 70 ntBASIC1.19□□□□□ -2.22
COL6A3P12111 ST7-OT4_2.1-201ENST00000619089 172 ntBASIC1.19□□□□□ -2.22
COL6A3P12111 AC116618.1-201ENST00000634617 774 ntBASIC1.19□□□□□ -2.22
COL6A3P12111 CEP83-202ENST00000397807 2737 ntTSL 5 BASIC1.19□□□□□ -2.22
COL6A3P12111 CLLU1-201ENST00000378485 3897 ntAPPRIS P1 TSL 1 (best) BASIC1.19□□□□□ -2.22
COL6A3P12111 JMJD1C-212ENST00000639129 7901 ntAPPRIS ALT2 TSL 5 BASIC1.19□□□□□ -2.22
COL6A3P12111 RNA5SP193-201ENST00000410353 107 ntBASIC1.18□□□□□ -2.22
Retrieved 100 of 98,524 protein–RNA pairs in 118.3 ms