Protein–RNA interactions for Protein: O95639

CPSF4, Cleavage and polyadenylation specificity factor subunit 4, humanhuman

Known RBP Predictions only

Length 269 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF4O95639 LINC00301-204ENST00000532591 470 ntTSL 2 BASIC1.92□□□□□ -2.1
CPSF4O95639 AC005832.3-201ENST00000537929 631 ntBASIC1.92□□□□□ -2.1
CPSF4O95639 AL163973.2-201ENST00000548096 288 ntTSL 3 BASIC1.92□□□□□ -2.1
CPSF4O95639 LINC01467-201ENST00000554211 1187 ntTSL 1 (best) BASIC1.92□□□□□ -2.1
CPSF4O95639 NBEAP1-201ENST00000554452 979 ntBASIC1.92□□□□□ -2.1
CPSF4O95639 MEG8-218ENST00000556720 456 ntTSL 3 BASIC1.92□□□□□ -2.1
CPSF4O95639 AL132657.2-201ENST00000564417 358 ntBASIC1.92□□□□□ -2.1
CPSF4O95639 ACTR3BP3-201ENST00000565577 979 ntBASIC1.92□□□□□ -2.1
CPSF4O95639 ISCA1P3-201ENST00000577104 373 ntBASIC1.92□□□□□ -2.1
CPSF4O95639 AC217774.1-201ENST00000578936 517 ntTSL 4 BASIC1.92□□□□□ -2.1
CPSF4O95639 TTN-AS1-212ENST00000582847 1036 ntTSL 5 BASIC1.92□□□□□ -2.1
CPSF4O95639 AC020895.1-201ENST00000595362 272 ntBASIC1.92□□□□□ -2.1
CPSF4O95639 AC013444.2-201ENST00000603317 787 ntBASIC1.92□□□□□ -2.1
CPSF4O95639 AC097504.2-201ENST00000608088 454 ntBASIC1.92□□□□□ -2.1
CPSF4O95639 AC110609.1-201ENST00000608228 303 ntTSL 3 BASIC1.92□□□□□ -2.1
CPSF4O95639 AC097717.1-250ENST00000608498 273 ntTSL 5 BASIC1.92□□□□□ -2.1
CPSF4O95639 AF129408.1-201ENST00000608767 431 ntBASIC1.92□□□□□ -2.1
CPSF4O95639 TUG1_1.1-201ENST00000610654 145 ntBASIC1.92□□□□□ -2.1
CPSF4O95639 AL138478.1-201ENST00000612252 832 ntBASIC1.92□□□□□ -2.1
CPSF4O95639 AL121895.2-201ENST00000619558 447 ntBASIC1.92□□□□□ -2.1
CPSF4O95639 IGHVIII-44-202ENST00000636235 289 ntBASIC1.92□□□□□ -2.1
CPSF4O95639 GTPBP8-205ENST00000473129 1518 ntTSL 2 BASIC1.91□□□□□ -2.1
CPSF4O95639 MCF2-204ENST00000414978 3813 ntAPPRIS ALT2 TSL 5 BASIC1.91□□□□□ -2.1
CPSF4O95639 PTPRQ-208ENST00000614701 8289 ntAPPRIS P1 TSL 5 BASIC1.91□□□□□ -2.1
CPSF4O95639 AGTR1-208ENST00000475347 1669 ntAPPRIS P1 TSL 3 BASIC1.91□□□□□ -2.1
CPSF4O95639 DNAJC12-202ENST00000339758 1064 ntTSL 1 (best) BASIC1.91□□□□□ -2.1
CPSF4O95639 RNU5E-10P-201ENST00000363506 118 ntBASIC1.91□□□□□ -2.1
CPSF4O95639 RNU6-1122P-201ENST00000384449 107 ntBASIC1.91□□□□□ -2.1
CPSF4O95639 SNORD116-12-201ENST00000384468 92 ntBASIC1.91□□□□□ -2.1
CPSF4O95639 AL590084.1-201ENST00000407885 387 ntBASIC1.91□□□□□ -2.1
CPSF4O95639 RNU2-43P-201ENST00000410306 190 ntBASIC1.91□□□□□ -2.1
CPSF4O95639 RNA5SP80-201ENST00000410475 111 ntBASIC1.91□□□□□ -2.1
CPSF4O95639 AL139156.1-201ENST00000412785 841 ntBASIC1.91□□□□□ -2.1
CPSF4O95639 RPL17P12-201ENST00000413391 526 ntBASIC1.91□□□□□ -2.1
CPSF4O95639 AL391839.1-201ENST00000417447 265 ntTSL 2 BASIC1.91□□□□□ -2.1
CPSF4O95639 DIAPH3-AS1-201ENST00000422052 428 ntTSL 3 BASIC1.91□□□□□ -2.1
CPSF4O95639 AL022396.1-201ENST00000427011 386 ntTSL 3 BASIC1.91□□□□□ -2.1
CPSF4O95639 AL080248.1-201ENST00000428954 388 ntTSL 3 BASIC1.91□□□□□ -2.1
CPSF4O95639 AC079799.1-201ENST00000430696 331 ntTSL 3 BASIC1.91□□□□□ -2.1
CPSF4O95639 RPS15AP7-201ENST00000439294 405 ntBASIC1.91□□□□□ -2.1
CPSF4O95639 ACBD3-AS1-201ENST00000440540 535 ntTSL 5 BASIC1.91□□□□□ -2.1
CPSF4O95639 RNF2P1-201ENST00000442955 1010 ntBASIC1.91□□□□□ -2.1
CPSF4O95639 AL590664.1-201ENST00000448065 339 ntBASIC1.91□□□□□ -2.1
CPSF4O95639 SATB1-AS1-204ENST00000453361 726 ntTSL 3 BASIC1.91□□□□□ -2.1
CPSF4O95639 OFD1P7Y-201ENST00000454643 1155 ntBASIC1.91□□□□□ -2.1
CPSF4O95639 RPL18AP17-201ENST00000455326 198 ntBASIC1.91□□□□□ -2.1
CPSF4O95639 LINC01846-201ENST00000505908 651 ntTSL 5 BASIC1.91□□□□□ -2.1
CPSF4O95639 LINC02428-201ENST00000508099 527 ntTSL 5 BASIC1.91□□□□□ -2.1
CPSF4O95639 AC109464.2-201ENST00000510242 943 ntBASIC1.91□□□□□ -2.1
CPSF4O95639 AC017037.2-201ENST00000513850 890 ntBASIC1.91□□□□□ -2.1
CPSF4O95639 RNY4P37-201ENST00000516225 96 ntBASIC1.91□□□□□ -2.1
CPSF4O95639 RNU1-103P-201ENST00000516502 125 ntBASIC1.91□□□□□ -2.1
CPSF4O95639 RNA5SP364-201ENST00000516938 78 ntBASIC1.91□□□□□ -2.1
CPSF4O95639 NDST1-AS1-201ENST00000519040 368 ntTSL 2 BASIC1.91□□□□□ -2.1
CPSF4O95639 IGKV3-31-201ENST00000523109 329 ntBASIC1.91□□□□□ -2.1
CPSF4O95639 OR10V3P-201ENST00000525712 725 ntBASIC1.91□□□□□ -2.1
CPSF4O95639 AP003730.2-201ENST00000526385 546 ntTSL 3 BASIC1.91□□□□□ -2.1
CPSF4O95639 LINC02286-201ENST00000552425 285 ntTSL 2 BASIC1.91□□□□□ -2.1
CPSF4O95639 AC114546.1-201ENST00000560140 473 ntTSL 3 BASIC1.91□□□□□ -2.1
CPSF4O95639 LINC02562-201ENST00000561705 785 ntTSL 2 BASIC1.91□□□□□ -2.1
CPSF4O95639 MYL12BP1-201ENST00000569826 507 ntBASIC1.91□□□□□ -2.1
CPSF4O95639 AP005433.1-202ENST00000580845 521 ntTSL 4 BASIC1.91□□□□□ -2.1
CPSF4O95639 AC127024.3-201ENST00000582841 460 ntTSL 3 BASIC1.91□□□□□ -2.1
CPSF4O95639 GLUD1P4-201ENST00000590914 418 ntBASIC1.91□□□□□ -2.1
CPSF4O95639 VN1R78P-201ENST00000597393 564 ntBASIC1.91□□□□□ -2.1
CPSF4O95639 BNIP3P27-201ENST00000599991 412 ntBASIC1.91□□□□□ -2.1
CPSF4O95639 AC069431.2-201ENST00000604149 1099 ntBASIC1.91□□□□□ -2.1
CPSF4O95639 AL390208.1-201ENST00000605885 644 ntBASIC1.91□□□□□ -2.1
CPSF4O95639 AP002826.1-201ENST00000608835 315 ntBASIC1.91□□□□□ -2.1
CPSF4O95639 WFDC11-203ENST00000618797 561 ntAPPRIS P1 TSL 5 BASIC1.91□□□□□ -2.1
CPSF4O95639 AL596245.1-201ENST00000618994 362 ntBASIC1.91□□□□□ -2.1
CPSF4O95639 AL356266.1-201ENST00000623311 483 ntBASIC1.91□□□□□ -2.1
CPSF4O95639 LINC02211-204ENST00000642024 1070 ntBASIC1.91□□□□□ -2.1
CPSF4O95639 FBXO11-201ENST00000402508 3844 ntAPPRIS P1 TSL 1 (best) BASIC1.91□□□□□ -2.1
CPSF4O95639 LCA5L-218ENST00000485895 2551 ntTSL 1 (best) BASIC1.91□□□□□ -2.1
CPSF4O95639 ATP13A3-201ENST00000256031 7322 ntAPPRIS P1 TSL 5 BASIC1.91□□□□□ -2.1
CPSF4O95639 ZNF883-201ENST00000619044 2051 ntAPPRIS P1 TSL 5 BASIC1.9□□□□□ -2.1
CPSF4O95639 TTC6-201ENST00000267368 1681 ntTSL 5 BASIC1.9□□□□□ -2.1
CPSF4O95639 CXCL10-201ENST00000306602 1176 ntAPPRIS P1 TSL 1 (best) BASIC1.9□□□□□ -2.11
CPSF4O95639 RNU6-1180P-201ENST00000364935 107 ntBASIC1.9□□□□□ -2.11
CPSF4O95639 XGY1-201ENST00000381172 446 ntBASIC1.9□□□□□ -2.11
CPSF4O95639 SNORA67.3-201ENST00000384366 140 ntBASIC1.9□□□□□ -2.11
CPSF4O95639 Y_RNA.548-201ENST00000384656 105 ntBASIC1.9□□□□□ -2.11
CPSF4O95639 AL356057.2-201ENST00000403318 432 ntBASIC1.9□□□□□ -2.11
CPSF4O95639 HMGB1P17-201ENST00000403495 628 ntBASIC1.9□□□□□ -2.11
CPSF4O95639 AL513477.1-202ENST00000417061 214 ntBASIC1.9□□□□□ -2.11
CPSF4O95639 AL139421.1-201ENST00000423010 169 ntBASIC1.9□□□□□ -2.11
CPSF4O95639 ANKRD10-IT1-201ENST00000426991 800 ntTSL 2 BASIC1.9□□□□□ -2.11
CPSF4O95639 NANOGP2-201ENST00000435391 727 ntBASIC1.9□□□□□ -2.11
CPSF4O95639 SDCBPP1-201ENST00000440192 890 ntBASIC1.9□□□□□ -2.11
CPSF4O95639 RPL26P6-201ENST00000440913 438 ntBASIC1.9□□□□□ -2.11
CPSF4O95639 MTCO1P53-201ENST00000441633 699 ntBASIC1.9□□□□□ -2.11
CPSF4O95639 AL161937.1-201ENST00000444478 425 ntTSL 3 BASIC1.9□□□□□ -2.11
CPSF4O95639 RPL31P60-201ENST00000478450 367 ntBASIC1.9□□□□□ -2.11
CPSF4O95639 LINC02447-203ENST00000504402 292 ntTSL 3 BASIC1.9□□□□□ -2.11
CPSF4O95639 CTD-2350J17.1-201ENST00000509228 362 ntTSL 2 BASIC1.9□□□□□ -2.11
CPSF4O95639 AC006499.2-201ENST00000513470 337 ntBASIC1.9□□□□□ -2.11
CPSF4O95639 AC011405.1-201ENST00000514207 248 ntTSL 3 BASIC1.9□□□□□ -2.11
CPSF4O95639 DEUP1-203ENST00000527307 767 ntTSL 3 BASIC1.9□□□□□ -2.11
CPSF4O95639 AHI1-217ENST00000534469 680 ntTSL 3 BASIC1.9□□□□□ -2.11
Retrieved 100 of 98,524 protein–RNA pairs in 129 ms