Protein–RNA interactions for Protein: O60663

LMX1B, LIM homeobox transcription factor 1-beta, humanhuman

Predictions only

Length 402 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LMX1BO60663 MFSD8-236ENST00000641509 4050 ntBASIC3.21□□□□□ -1.9
LMX1BO60663 CEP44-201ENST00000296519 4173 ntAPPRIS P1 TSL 1 (best) BASIC3.21□□□□□ -1.9
LMX1BO60663 PLS3-203ENST00000420625 3150 ntTSL 5 BASIC3.21□□□□□ -1.9
LMX1BO60663 AC007656.2-201ENST00000624902 4547 ntBASIC3.21□□□□□ -1.9
LMX1BO60663 AGBL2-201ENST00000357610 3295 ntAPPRIS ALT2 TSL 5 BASIC3.21□□□□□ -1.9
LMX1BO60663 MGA-211ENST00000570161 11859 ntAPPRIS P4 TSL 5 BASIC3.21□□□□□ -1.9
LMX1BO60663 GALNT1-201ENST00000269195 3847 ntAPPRIS P1 TSL 1 (best) BASIC3.21□□□□□ -1.9
LMX1BO60663 MIR423-201ENST00000362201 94 ntBASIC3.21□□□□□ -1.9
LMX1BO60663 SNORD56.2-201ENST00000363242 71 ntBASIC3.21□□□□□ -1.9
LMX1BO60663 SNORA69-201ENST00000383895 132 ntBASIC3.21□□□□□ -1.9
LMX1BO60663 MIR1-2-201ENST00000384961 85 ntBASIC3.21□□□□□ -1.9
LMX1BO60663 RNA5SP424-201ENST00000390988 115 ntBASIC3.21□□□□□ -1.9
LMX1BO60663 OR9R1P-201ENST00000412200 877 ntBASIC3.21□□□□□ -1.9
LMX1BO60663 MRPL50P2-201ENST00000416821 482 ntBASIC3.21□□□□□ -1.9
LMX1BO60663 RPS15AP12-201ENST00000419498 388 ntBASIC3.21□□□□□ -1.9
LMX1BO60663 LINC01351-201ENST00000424735 526 ntTSL 2 BASIC3.21□□□□□ -1.9
LMX1BO60663 HMGB3P12-201ENST00000438745 556 ntBASIC3.21□□□□□ -1.9
LMX1BO60663 AC098614.3-201ENST00000438957 440 ntBASIC3.21□□□□□ -1.9
LMX1BO60663 AC007003.1-202ENST00000439318 349 ntTSL 5 BASIC3.21□□□□□ -1.9
LMX1BO60663 AC016691.1-201ENST00000441321 413 ntBASIC3.21□□□□□ -1.9
LMX1BO60663 AL929236.1-201ENST00000443622 518 ntTSL 3 BASIC3.21□□□□□ -1.9
LMX1BO60663 AL136097.2-201ENST00000457003 333 ntTSL 2 BASIC3.21□□□□□ -1.9
LMX1BO60663 RPL23AP41-201ENST00000484754 458 ntBASIC3.21□□□□□ -1.9
LMX1BO60663 ARNTL2-AS1-201ENST00000500498 804 ntTSL 1 (best) BASIC3.21□□□□□ -1.9
LMX1BO60663 COX7A2P2-201ENST00000505291 250 ntBASIC3.21□□□□□ -1.9
LMX1BO60663 AC108517.1-201ENST00000512546 327 ntTSL 3 BASIC3.21□□□□□ -1.9
LMX1BO60663 AC017037.2-201ENST00000513850 890 ntBASIC3.21□□□□□ -1.9
LMX1BO60663 HIGD1AP3-201ENST00000515857 278 ntBASIC3.21□□□□□ -1.9
LMX1BO60663 RN7SKP18-201ENST00000516005 275 ntBASIC3.21□□□□□ -1.9
LMX1BO60663 RNU6-27P-201ENST00000516146 107 ntBASIC3.21□□□□□ -1.9
LMX1BO60663 AC084768.1-201ENST00000518926 923 ntTSL 3 BASIC3.21□□□□□ -1.9
LMX1BO60663 CENPUP1-201ENST00000526649 1202 ntBASIC3.21□□□□□ -1.9
LMX1BO60663 OR5B19P-201ENST00000531766 928 ntBASIC3.21□□□□□ -1.9
LMX1BO60663 AC073530.1-201ENST00000535917 775 ntTSL 5 BASIC3.21□□□□□ -1.9
LMX1BO60663 LINC00508-201ENST00000538901 194 ntTSL 5 BASIC3.21□□□□□ -1.9
LMX1BO60663 AC090531.1-202ENST00000548450 499 ntTSL 3 BASIC3.21□□□□□ -1.9
LMX1BO60663 AC025575.1-201ENST00000548497 544 ntTSL 4 BASIC3.21□□□□□ -1.9
LMX1BO60663 AL133371.2-201ENST00000556624 294 ntTSL 3 BASIC3.21□□□□□ -1.9
LMX1BO60663 AC023034.1-202ENST00000558153 684 ntTSL 3 BASIC3.21□□□□□ -1.9
LMX1BO60663 MIR4738-201ENST00000579134 87 ntBASIC3.21□□□□□ -1.9
LMX1BO60663 MIR4512-201ENST00000583257 77 ntBASIC3.21□□□□□ -1.9
LMX1BO60663 AC097467.3-205ENST00000597955 594 ntTSL 5 BASIC3.21□□□□□ -1.9
LMX1BO60663 AL590235.2-201ENST00000602641 632 ntTSL 5 BASIC3.21□□□□□ -1.9
LMX1BO60663 AC007566.2-201ENST00000603642 413 ntBASIC3.21□□□□□ -1.9
LMX1BO60663 AL355376.2-201ENST00000603866 267 ntTSL 5 BASIC3.21□□□□□ -1.9
LMX1BO60663 AL009028.1-201ENST00000604895 802 ntBASIC3.21□□□□□ -1.9
LMX1BO60663 AC110741.2-201ENST00000605278 268 ntBASIC3.21□□□□□ -1.9
LMX1BO60663 ACYP2-208ENST00000606865 674 ntTSL 5 BASIC3.21□□□□□ -1.9
LMX1BO60663 AC016747.2-202ENST00000607743 332 ntTSL 5 BASIC3.21□□□□□ -1.9
LMX1BO60663 AL445584.2-201ENST00000614030 616 ntTSL 5 BASIC3.21□□□□□ -1.9
LMX1BO60663 AC112204.3-201ENST00000623822 332 ntBASIC3.21□□□□□ -1.9
LMX1BO60663 AC009033.1-201ENST00000624279 431 ntBASIC3.21□□□□□ -1.9
LMX1BO60663 AL359697.1-201ENST00000624879 587 ntBASIC3.21□□□□□ -1.9
LMX1BO60663 AL159972.1-201ENST00000625150 448 ntBASIC3.21□□□□□ -1.9
LMX1BO60663 LRRC39-204ENST00000620882 1951 ntTSL 5 BASIC3.21□□□□□ -1.9
LMX1BO60663 TNNI3K-201ENST00000326637 3001 ntAPPRIS P1 TSL 1 (best) BASIC3.21□□□□□ -1.9
LMX1BO60663 ABCD2-201ENST00000308666 6238 ntAPPRIS P1 TSL 1 (best) BASIC3.21□□□□□ -1.9
LMX1BO60663 C6orf10-205ENST00000527965 2076 ntAPPRIS ALT2 TSL 2 BASIC3.21□□□□□ -1.9
LMX1BO60663 ZNF680P1-201ENST00000436625 1469 ntBASIC3.21□□□□□ -1.9
LMX1BO60663 BAZ2B-204ENST00000392783 8289 ntAPPRIS P1 TSL 5 BASIC3.21□□□□□ -1.9
LMX1BO60663 MBNL1-218ENST00000485910 4257 ntTSL 1 (best) BASIC3.21□□□□□ -1.9
LMX1BO60663 CKAP2P1-201ENST00000555477 2049 ntBASIC3.2□□□□□ -1.9
LMX1BO60663 WRN-201ENST00000298139 5215 ntAPPRIS P1 TSL 1 (best) BASIC3.2□□□□□ -1.9
LMX1BO60663 ARAP2-210ENST00000618163 2592 ntTSL 5 BASIC3.2□□□□□ -1.9
LMX1BO60663 ENPP3-202ENST00000358229 3026 ntTSL 1 (best) BASIC3.2□□□□□ -1.9
LMX1BO60663 SPAM1-205ENST00000439500 2220 ntAPPRIS ALT2 TSL 1 (best) BASIC3.2□□□□□ -1.9
LMX1BO60663 CD36-221ENST00000534394 1741 ntTSL 2 BASIC3.2□□□□□ -1.9
LMX1BO60663 RPL7P26-201ENST00000333817 754 ntBASIC3.2□□□□□ -1.9
LMX1BO60663 Y_RNA.22-201ENST00000362492 102 ntBASIC3.2□□□□□ -1.9
LMX1BO60663 RNU6-989P-201ENST00000362756 107 ntBASIC3.2□□□□□ -1.9
LMX1BO60663 RNU6-1097P-201ENST00000363586 107 ntBASIC3.2□□□□□ -1.9
LMX1BO60663 CRISP3-203ENST00000371159 872 ntAPPRIS ALT2 TSL 5 BASIC3.2□□□□□ -1.9
LMX1BO60663 RNU6-339P-201ENST00000384310 107 ntBASIC3.2□□□□□ -1.9
LMX1BO60663 RNU6-39P-201ENST00000384344 107 ntBASIC3.2□□□□□ -1.9
LMX1BO60663 Y_RNA.509-201ENST00000384506 99 ntBASIC3.2□□□□□ -1.9
LMX1BO60663 MIR183-201ENST00000384958 110 ntBASIC3.2□□□□□ -1.9
LMX1BO60663 PTMAP5-201ENST00000393073 333 ntBASIC3.2□□□□□ -1.9
LMX1BO60663 Z98941.1-201ENST00000407764 100 ntBASIC3.2□□□□□ -1.9
LMX1BO60663 RN7SKP177-201ENST00000410567 355 ntBASIC3.2□□□□□ -1.9
LMX1BO60663 AC114763.2-201ENST00000412593 826 ntTSL 2 BASIC3.2□□□□□ -1.9
LMX1BO60663 UBE2Q2P12-201ENST00000414573 204 ntBASIC3.2□□□□□ -1.9
LMX1BO60663 LINC01349-201ENST00000416343 497 ntTSL 3 BASIC3.2□□□□□ -1.9
LMX1BO60663 SYF2P2-201ENST00000417620 583 ntBASIC3.2□□□□□ -1.9
LMX1BO60663 LINC01853-201ENST00000417715 444 ntTSL 3 BASIC3.2□□□□□ -1.9
LMX1BO60663 AL445989.1-202ENST00000418943 776 ntTSL 2 BASIC3.2□□□□□ -1.9
LMX1BO60663 AC016710.1-201ENST00000421326 466 ntTSL 3 BASIC3.2□□□□□ -1.9
LMX1BO60663 AL080248.1-201ENST00000428954 388 ntTSL 3 BASIC3.2□□□□□ -1.9
LMX1BO60663 CALM1P1-201ENST00000442082 433 ntBASIC3.2□□□□□ -1.9
LMX1BO60663 AC099566.1-201ENST00000442558 479 ntTSL 3 BASIC3.2□□□□□ -1.9
LMX1BO60663 CYCSP35-201ENST00000451978 304 ntBASIC3.2□□□□□ -1.9
LMX1BO60663 SPIN4-AS1-201ENST00000451979 426 ntTSL 2 BASIC3.2□□□□□ -1.9
LMX1BO60663 CACYBPP2-201ENST00000453625 678 ntBASIC3.2□□□□□ -1.9
LMX1BO60663 AL133162.1-201ENST00000463228 453 ntBASIC3.2□□□□□ -1.9
LMX1BO60663 HMGB1P25-201ENST00000468402 607 ntBASIC3.2□□□□□ -1.9
LMX1BO60663 LINC00492-201ENST00000504436 593 ntTSL 3 BASIC3.2□□□□□ -1.9
LMX1BO60663 PCBP2P3-201ENST00000509726 843 ntBASIC3.2□□□□□ -1.9
LMX1BO60663 AC104619.4-201ENST00000510773 249 ntBASIC3.2□□□□□ -1.9
LMX1BO60663 AC106038.1-203ENST00000522132 362 ntTSL 2 BASIC3.2□□□□□ -1.9
LMX1BO60663 AC103798.1-201ENST00000532562 376 ntTSL 2 BASIC3.2□□□□□ -1.9
LMX1BO60663 SETP2-201ENST00000553886 926 ntBASIC3.2□□□□□ -1.9
Retrieved 100 of 98,524 protein–RNA pairs in 92.3 ms