Protein–RNA interactions for Protein: Q9P1Q0

VPS54, Vacuolar protein sorting-associated protein 54, humanhuman

Predictions only

Length 977 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS54Q9P1Q0 AP005059.2-201ENST00000577527 578 ntTSL 3 BASIC3.04□□□□□ -1.92
VPS54Q9P1Q0 AC007001.1-201ENST00000590912 670 ntTSL 5 BASIC3.04□□□□□ -1.92
VPS54Q9P1Q0 AC023043.3-201ENST00000593113 385 ntBASIC3.04□□□□□ -1.92
VPS54Q9P1Q0 SOX2-OT-224ENST00000595313 716 ntTSL 5 BASIC3.04□□□□□ -1.92
VPS54Q9P1Q0 AC012313.1-202ENST00000597309 423 ntTSL 3 BASIC3.04□□□□□ -1.92
VPS54Q9P1Q0 AP003122.6-201ENST00000623831 495 ntBASIC3.04□□□□□ -1.92
VPS54Q9P1Q0 AC103706.2-201ENST00000638080 240 ntBASIC3.04□□□□□ -1.92
VPS54Q9P1Q0 OLFM3-206ENST00000536598 2801 ntTSL 5 BASIC3.04□□□□□ -1.92
VPS54Q9P1Q0 HDX-206ENST00000506585 6158 ntTSL 2 BASIC3.04□□□□□ -1.92
VPS54Q9P1Q0 PP2D1-202ENST00000389050 2151 ntAPPRIS P1 TSL 5 BASIC3.04□□□□□ -1.92
VPS54Q9P1Q0 PLSCR5-201ENST00000443512 1969 ntAPPRIS P1 TSL 1 (best) BASIC3.03□□□□□ -1.92
VPS54Q9P1Q0 ANKRD36C-201ENST00000295246 2272 ntTSL 5 BASIC3.03□□□□□ -1.92
VPS54Q9P1Q0 AC087359.1-201ENST00000508335 1740 ntBASIC3.03□□□□□ -1.92
VPS54Q9P1Q0 STATH-201ENST00000246895 598 ntAPPRIS P1 TSL 1 (best) BASIC3.03□□□□□ -1.92
VPS54Q9P1Q0 OR52E6-201ENST00000329322 970 ntAPPRIS P1 BASIC3.03□□□□□ -1.92
VPS54Q9P1Q0 SNORA14A-201ENST00000364773 135 ntBASIC3.03□□□□□ -1.92
VPS54Q9P1Q0 RNU6-359P-201ENST00000365466 108 ntBASIC3.03□□□□□ -1.92
VPS54Q9P1Q0 RNU6-76P-201ENST00000384060 104 ntBASIC3.03□□□□□ -1.92
VPS54Q9P1Q0 SNORA1.3-201ENST00000384676 136 ntBASIC3.03□□□□□ -1.92
VPS54Q9P1Q0 U3.26-201ENST00000391236 204 ntBASIC3.03□□□□□ -1.92
VPS54Q9P1Q0 C1D-204ENST00000410067 736 ntAPPRIS P1 TSL 1 (best) BASIC3.03□□□□□ -1.92
VPS54Q9P1Q0 RBM6-203ENST00000421682 684 ntTSL 2 BASIC3.03□□□□□ -1.92
VPS54Q9P1Q0 AC097347.1-201ENST00000438499 517 ntTSL 3 BASIC3.03□□□□□ -1.92
VPS54Q9P1Q0 AC009299.3-202ENST00000445372 538 ntTSL 3 BASIC3.03□□□□□ -1.92
VPS54Q9P1Q0 AP000936.2-201ENST00000447151 681 ntBASIC3.03□□□□□ -1.92
VPS54Q9P1Q0 ANKRD26P4-201ENST00000455755 950 ntBASIC3.03□□□□□ -1.92
VPS54Q9P1Q0 PCCA-AS1-203ENST00000455958 356 ntTSL 3 BASIC3.03□□□□□ -1.92
VPS54Q9P1Q0 LEKR1-206ENST00000483177 546 ntTSL 3 BASIC3.03□□□□□ -1.92
VPS54Q9P1Q0 AC021382.1-201ENST00000483523 359 ntBASIC3.03□□□□□ -1.92
VPS54Q9P1Q0 SNORA31.22-201ENST00000517204 135 ntBASIC3.03□□□□□ -1.92
VPS54Q9P1Q0 AC026991.1-201ENST00000520815 463 ntTSL 3 BASIC3.03□□□□□ -1.92
VPS54Q9P1Q0 AC023538.1-201ENST00000534576 736 ntBASIC3.03□□□□□ -1.92
VPS54Q9P1Q0 ERP27-202ENST00000540097 993 ntTSL 2 BASIC3.03□□□□□ -1.92
VPS54Q9P1Q0 AC023050.2-201ENST00000544968 387 ntBASIC3.03□□□□□ -1.92
VPS54Q9P1Q0 AC007513.1-201ENST00000548740 379 ntTSL 3 BASIC3.03□□□□□ -1.92
VPS54Q9P1Q0 MIR3921-201ENST00000577308 85 ntBASIC3.03□□□□□ -1.92
VPS54Q9P1Q0 AL391001.1-201ENST00000602747 715 ntBASIC3.03□□□□□ -1.92
VPS54Q9P1Q0 AC106791.2-201ENST00000604680 391 ntBASIC3.03□□□□□ -1.92
VPS54Q9P1Q0 AL035413.2-201ENST00000604801 525 ntBASIC3.03□□□□□ -1.92
VPS54Q9P1Q0 MACROD2-IT1-202ENST00000605675 575 ntTSL 5 BASIC3.03□□□□□ -1.92
VPS54Q9P1Q0 RNU6-88P-201ENST00000606801 100 ntBASIC3.03□□□□□ -1.92
VPS54Q9P1Q0 AP000254.1-201ENST00000609934 520 ntBASIC3.03□□□□□ -1.92
VPS54Q9P1Q0 TMEM232-201ENST00000455884 2501 ntAPPRIS P2 TSL 2 BASIC3.03□□□□□ -1.92
VPS54Q9P1Q0 AC012321.1-201ENST00000561622 1588 ntBASIC3.03□□□□□ -1.92
VPS54Q9P1Q0 AC008568.2-201ENST00000623862 2313 ntBASIC3.03□□□□□ -1.92
VPS54Q9P1Q0 ANKRD18EP-201ENST00000405487 2632 ntBASIC3.03□□□□□ -1.93
VPS54Q9P1Q0 OR9G4-203ENST00000641581 2603 ntAPPRIS P1 BASIC3.03□□□□□ -1.93
VPS54Q9P1Q0 IKZF2-213ENST00000457361 9350 ntTSL 5 BASIC3.02□□□□□ -1.93
VPS54Q9P1Q0 AC062016.1-201ENST00000355719 319 ntBASIC3.02□□□□□ -1.93
VPS54Q9P1Q0 MT-ND2-201ENST00000361453 1042 ntAPPRIS P1 BASIC3.02□□□□□ -1.93
VPS54Q9P1Q0 RNU6-859P-201ENST00000362728 107 ntBASIC3.02□□□□□ -1.93
VPS54Q9P1Q0 RNU6-433P-201ENST00000363216 104 ntBASIC3.02□□□□□ -1.93
VPS54Q9P1Q0 RNU6-1214P-201ENST00000363650 109 ntBASIC3.02□□□□□ -1.93
VPS54Q9P1Q0 RNU6-931P-201ENST00000363850 107 ntBASIC3.02□□□□□ -1.93
VPS54Q9P1Q0 RNU6-723P-201ENST00000383973 107 ntBASIC3.02□□□□□ -1.93
VPS54Q9P1Q0 RNU6-1027P-201ENST00000383998 107 ntBASIC3.02□□□□□ -1.93
VPS54Q9P1Q0 RNU6-114P-201ENST00000384704 105 ntBASIC3.02□□□□□ -1.93
VPS54Q9P1Q0 MIR34A-201ENST00000385130 110 ntBASIC3.02□□□□□ -1.93
VPS54Q9P1Q0 RNA5SP210-201ENST00000391034 120 ntBASIC3.02□□□□□ -1.93
VPS54Q9P1Q0 SAR1AP4-201ENST00000429225 591 ntBASIC3.02□□□□□ -1.93
VPS54Q9P1Q0 ARL5AP4-201ENST00000430731 512 ntBASIC3.02□□□□□ -1.93
VPS54Q9P1Q0 NDUFB4P6-201ENST00000436819 366 ntBASIC3.02□□□□□ -1.93
VPS54Q9P1Q0 AC018643.1-201ENST00000445459 414 ntTSL 5 BASIC3.02□□□□□ -1.93
VPS54Q9P1Q0 Z98749.1-201ENST00000454123 541 ntTSL 5 BASIC3.02□□□□□ -1.93
VPS54Q9P1Q0 AC104685.1-201ENST00000502445 371 ntBASIC3.02□□□□□ -1.93
VPS54Q9P1Q0 AC079340.1-201ENST00000504799 552 ntTSL 4 BASIC3.02□□□□□ -1.93
VPS54Q9P1Q0 AC020703.1-201ENST00000505051 521 ntTSL 3 BASIC3.02□□□□□ -1.93
VPS54Q9P1Q0 AC010280.1-201ENST00000515199 340 ntTSL 2 BASIC3.02□□□□□ -1.93
VPS54Q9P1Q0 AC095057.2-201ENST00000515422 553 ntTSL 4 BASIC3.02□□□□□ -1.93
VPS54Q9P1Q0 RNU6-56P-201ENST00000516986 93 ntBASIC3.02□□□□□ -1.93
VPS54Q9P1Q0 IGHVII-62-1-201ENST00000519283 235 ntBASIC3.02□□□□□ -1.93
VPS54Q9P1Q0 SDHAF2-203ENST00000534878 523 ntTSL 2 BASIC3.02□□□□□ -1.93
VPS54Q9P1Q0 AP003781.1-201ENST00000543403 404 ntTSL 3 BASIC3.02□□□□□ -1.93
VPS54Q9P1Q0 MRPL42-208ENST00000552217 920 ntAPPRIS P2 TSL 2 BASIC3.02□□□□□ -1.93
VPS54Q9P1Q0 AC074052.2-201ENST00000562516 214 ntTSL 3 BASIC3.02□□□□□ -1.93
VPS54Q9P1Q0 AC011260.1-201ENST00000578420 472 ntBASIC3.02□□□□□ -1.93
VPS54Q9P1Q0 HSPE1P7-201ENST00000604681 321 ntBASIC3.02□□□□□ -1.93
VPS54Q9P1Q0 AC083798.2-205ENST00000608015 575 ntTSL 5 BASIC3.02□□□□□ -1.93
VPS54Q9P1Q0 AC024560.3-201ENST00000608482 349 ntBASIC3.02□□□□□ -1.93
VPS54Q9P1Q0 AC004067.1-201ENST00000608733 700 ntBASIC3.02□□□□□ -1.93
VPS54Q9P1Q0 AC079395.3-201ENST00000615161 484 ntBASIC3.02□□□□□ -1.93
VPS54Q9P1Q0 SOCS4-201ENST00000339298 6667 ntAPPRIS P1 TSL 1 (best) BASIC3.02□□□□□ -1.93
VPS54Q9P1Q0 ZMYM2-203ENST00000382874 10139 ntAPPRIS P1 TSL 1 (best) BASIC3.02□□□□□ -1.93
VPS54Q9P1Q0 FTX-214ENST00000638437 12267 ntTSL 5 BASIC3.02□□□□□ -1.93
VPS54Q9P1Q0 AC005832.2-201ENST00000538921 1430 ntBASIC3.02□□□□□ -1.93
VPS54Q9P1Q0 MUC7-203ENST00000456088 2479 ntAPPRIS P2 TSL 4 BASIC3.01□□□□□ -1.93
VPS54Q9P1Q0 C2orf73-208ENST00000615983 1376 ntTSL 1 (best) BASIC3.01□□□□□ -1.93
VPS54Q9P1Q0 FBXO11-201ENST00000402508 3844 ntAPPRIS P1 TSL 1 (best) BASIC3.01□□□□□ -1.93
VPS54Q9P1Q0 WDR3-201ENST00000349139 9974 ntAPPRIS P1 TSL 1 (best) BASIC3.01□□□□□ -1.93
VPS54Q9P1Q0 MAPK10-322ENST00000641485 4530 ntBASIC3.01□□□□□ -1.93
VPS54Q9P1Q0 KCNE2-201ENST00000290310 1051 ntAPPRIS P1 TSL 1 (best) BASIC3.01□□□□□ -1.93
VPS54Q9P1Q0 PMCH-201ENST00000329406 766 ntAPPRIS P1 TSL 1 (best) BASIC3.01□□□□□ -1.93
VPS54Q9P1Q0 RPL21P132-201ENST00000331267 462 ntBASIC3.01□□□□□ -1.93
VPS54Q9P1Q0 RNU5A-1-201ENST00000362698 116 ntBASIC3.01□□□□□ -1.93
VPS54Q9P1Q0 SNORA5B-201ENST00000363786 132 ntBASIC3.01□□□□□ -1.93
VPS54Q9P1Q0 RNU6-853P-201ENST00000364306 107 ntBASIC3.01□□□□□ -1.93
VPS54Q9P1Q0 RNU6-1078P-201ENST00000364522 103 ntBASIC3.01□□□□□ -1.93
VPS54Q9P1Q0 LGI1-201ENST00000371413 1247 ntTSL 1 (best) BASIC3.01□□□□□ -1.93
VPS54Q9P1Q0 RNU6-1200P-201ENST00000384162 107 ntBASIC3.01□□□□□ -1.93
VPS54Q9P1Q0 RNU6-1197P-201ENST00000391183 107 ntBASIC3.01□□□□□ -1.93
Retrieved 100 of 98,524 protein–RNA pairs in 117.1 ms