Protein–RNA interactions for Protein: Q99742

NPAS1, Neuronal PAS domain-containing protein 1, humanhuman

Predictions only

Length 590 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NPAS1Q99742 RFPL3S-202ENST00000382086 455 ntAPPRIS ALT2 TSL 2 BASIC3.58□□□□□ -1.84
NPAS1Q99742 DEFB109C-201ENST00000382575 264 ntBASIC3.58□□□□□ -1.84
NPAS1Q99742 DEFB109B-201ENST00000382656 264 ntBASIC3.58□□□□□ -1.84
NPAS1Q99742 MIR514A1-201ENST00000385133 98 ntBASIC3.58□□□□□ -1.84
NPAS1Q99742 PPIAP31-201ENST00000405422 495 ntBASIC3.58□□□□□ -1.84
NPAS1Q99742 MIR1290-201ENST00000408735 78 ntBASIC3.58□□□□□ -1.84
NPAS1Q99742 SNORA3C-201ENST00000408792 125 ntBASIC3.58□□□□□ -1.84
NPAS1Q99742 RPL30P2-201ENST00000414021 291 ntBASIC3.58□□□□□ -1.84
NPAS1Q99742 AL355674.1-201ENST00000423681 648 ntTSL 1 (best) BASIC3.58□□□□□ -1.84
NPAS1Q99742 RPL27AP8-201ENST00000424277 446 ntBASIC3.58□□□□□ -1.84
NPAS1Q99742 AL157378.1-201ENST00000424506 265 ntTSL 5 BASIC3.58□□□□□ -1.84
NPAS1Q99742 AL606489.2-201ENST00000433886 234 ntBASIC3.58□□□□□ -1.84
NPAS1Q99742 AL451129.1-201ENST00000437471 285 ntTSL 3 BASIC3.58□□□□□ -1.84
NPAS1Q99742 CASP1-203ENST00000446369 948 ntTSL 1 (best) BASIC3.58□□□□□ -1.84
NPAS1Q99742 AC013269.3-201ENST00000450486 444 ntTSL 3 BASIC3.58□□□□□ -1.84
NPAS1Q99742 AC078785.3-201ENST00000476607 425 ntBASIC3.58□□□□□ -1.84
NPAS1Q99742 ANKRD7-204ENST00000477532 744 ntTSL 5 BASIC3.58□□□□□ -1.84
NPAS1Q99742 HSPD1P15-201ENST00000505573 1122 ntBASIC3.58□□□□□ -1.84
NPAS1Q99742 AC093534.2-201ENST00000511418 420 ntTSL 3 BASIC3.58□□□□□ -1.84
NPAS1Q99742 RNA5SP468-201ENST00000516782 93 ntBASIC3.58□□□□□ -1.84
NPAS1Q99742 HDAC2-AS2-206ENST00000517965 850 ntTSL 3 BASIC3.58□□□□□ -1.84
NPAS1Q99742 AP003498.1-201ENST00000532530 347 ntTSL 3 BASIC3.58□□□□□ -1.84
NPAS1Q99742 OR8R1P-201ENST00000543943 764 ntBASIC3.58□□□□□ -1.84
NPAS1Q99742 AL512310.1-201ENST00000548639 172 ntBASIC3.58□□□□□ -1.84
NPAS1Q99742 AL133241.1-201ENST00000556832 487 ntBASIC3.58□□□□□ -1.84
NPAS1Q99742 AC215217.1-201ENST00000562162 347 ntTSL 3 BASIC3.58□□□□□ -1.84
NPAS1Q99742 AC120057.2-201ENST00000571520 271 ntBASIC3.58□□□□□ -1.84
NPAS1Q99742 MIR3690-201ENST00000580266 75 ntBASIC3.58□□□□□ -1.84
NPAS1Q99742 AC007621.1-201ENST00000604544 437 ntBASIC3.58□□□□□ -1.84
NPAS1Q99742 AC103710.3-201ENST00000608157 948 ntBASIC3.58□□□□□ -1.84
NPAS1Q99742 MIR6798-201ENST00000612887 67 ntBASIC3.58□□□□□ -1.84
NPAS1Q99742 AC007014.2-201ENST00000615581 479 ntBASIC3.58□□□□□ -1.84
NPAS1Q99742 AC007998.5-201ENST00000622938 237 ntBASIC3.58□□□□□ -1.84
NPAS1Q99742 HSFY2-201ENST00000304790 1444 ntAPPRIS P5 TSL 1 (best) BASIC3.58□□□□□ -1.84
NPAS1Q99742 HSFY1-201ENST00000307393 1444 ntAPPRIS P5 TSL 1 (best) BASIC3.58□□□□□ -1.84
NPAS1Q99742 CNTN6-205ENST00000446702 4513 ntAPPRIS P1 TSL 1 (best) BASIC3.58□□□□□ -1.84
NPAS1Q99742 OTUD4P1-201ENST00000237841 3067 ntBASIC3.58□□□□□ -1.84
NPAS1Q99742 CAB39L-206ENST00000410043 1627 ntAPPRIS P1 TSL 1 (best) BASIC3.58□□□□□ -1.84
NPAS1Q99742 CENPJ-205ENST00000545981 4299 ntTSL 2 BASIC3.57□□□□□ -1.84
NPAS1Q99742 SPINK1-201ENST00000296695 542 ntAPPRIS P1 TSL 1 (best) BASIC3.57□□□□□ -1.84
NPAS1Q99742 LRMP-201ENST00000354454 2504 ntAPPRIS P2 TSL 1 (best) BASIC3.57□□□□□ -1.84
NPAS1Q99742 Y_RNA.248-201ENST00000364501 109 ntBASIC3.57□□□□□ -1.84
NPAS1Q99742 RNU4-48P-201ENST00000365559 182 ntBASIC3.57□□□□□ -1.84
NPAS1Q99742 AKAP14-204ENST00000371431 977 ntAPPRIS P3 TSL 1 (best) BASIC3.57□□□□□ -1.84
NPAS1Q99742 RNU6-946P-201ENST00000383878 107 ntBASIC3.57□□□□□ -1.84
NPAS1Q99742 RPS4XP8-201ENST00000402039 771 ntBASIC3.57□□□□□ -1.84
NPAS1Q99742 OR51A5P-201ENST00000415429 942 ntBASIC3.57□□□□□ -1.84
NPAS1Q99742 AF241725.1-201ENST00000416182 480 ntTSL 3 BASIC3.57□□□□□ -1.84
NPAS1Q99742 ITCH-IT1-201ENST00000418598 208 ntTSL 3 BASIC3.57□□□□□ -1.84
NPAS1Q99742 AL590383.1-201ENST00000428602 75 ntBASIC3.57□□□□□ -1.84
NPAS1Q99742 AC011742.1-201ENST00000431448 434 ntBASIC3.57□□□□□ -1.84
NPAS1Q99742 AC083863.1-201ENST00000438811 231 ntBASIC3.57□□□□□ -1.84
NPAS1Q99742 RPS29P7-201ENST00000439662 171 ntBASIC3.57□□□□□ -1.84
NPAS1Q99742 AP001432.1-201ENST00000440629 520 ntTSL 2 BASIC3.57□□□□□ -1.84
NPAS1Q99742 TXNP1-201ENST00000441872 371 ntBASIC3.57□□□□□ -1.84
NPAS1Q99742 AC018816.1-203ENST00000441894 338 ntTSL 3 BASIC3.57□□□□□ -1.84
NPAS1Q99742 RANP8-201ENST00000444720 713 ntBASIC3.57□□□□□ -1.84
NPAS1Q99742 ST6GAL2-IT1-201ENST00000446058 388 ntTSL 2 BASIC3.57□□□□□ -1.84
NPAS1Q99742 HMGN2P7-201ENST00000456186 273 ntBASIC3.57□□□□□ -1.84
NPAS1Q99742 AL160162.1-201ENST00000456715 442 ntTSL 3 BASIC3.57□□□□□ -1.84
NPAS1Q99742 RNU7-182P-201ENST00000459009 62 ntBASIC3.57□□□□□ -1.84
NPAS1Q99742 RPS4XP13-201ENST00000483219 789 ntBASIC3.57□□□□□ -1.84
NPAS1Q99742 LINC00824-201ENST00000517583 805 ntTSL 5 BASIC3.57□□□□□ -1.84
NPAS1Q99742 AC009435.1-201ENST00000519555 574 ntTSL 4 BASIC3.57□□□□□ -1.84
NPAS1Q99742 AC109635.3-201ENST00000529536 185 ntBASIC3.57□□□□□ -1.84
NPAS1Q99742 OR5B10P-201ENST00000532869 642 ntBASIC3.57□□□□□ -1.84
NPAS1Q99742 AK6P1-201ENST00000540219 478 ntBASIC3.57□□□□□ -1.84
NPAS1Q99742 AC025575.1-201ENST00000548497 544 ntTSL 4 BASIC3.57□□□□□ -1.84
NPAS1Q99742 AC091516.1-201ENST00000549191 703 ntBASIC3.57□□□□□ -1.84
NPAS1Q99742 AC084879.2-201ENST00000551656 369 ntTSL 3 BASIC3.57□□□□□ -1.84
NPAS1Q99742 GNRHR2P1-201ENST00000555315 631 ntBASIC3.57□□□□□ -1.84
NPAS1Q99742 AC009292.2-201ENST00000558889 291 ntTSL 5 BASIC3.57□□□□□ -1.84
NPAS1Q99742 AC068135.2-201ENST00000569293 1028 ntBASIC3.57□□□□□ -1.84
NPAS1Q99742 MIR3186-201ENST00000577404 85 ntBASIC3.57□□□□□ -1.84
NPAS1Q99742 AC011824.2-201ENST00000579896 579 ntTSL 4 BASIC3.57□□□□□ -1.84
NPAS1Q99742 AC005899.4-201ENST00000581915 514 ntTSL 4 BASIC3.57□□□□□ -1.84
NPAS1Q99742 MIR4801-201ENST00000582704 82 ntBASIC3.57□□□□□ -1.84
NPAS1Q99742 AP000907.4-201ENST00000604143 237 ntBASIC3.57□□□□□ -1.84
NPAS1Q99742 AC104763.2-201ENST00000604179 382 ntBASIC3.57□□□□□ -1.84
NPAS1Q99742 TMEM212-205ENST00000619900 585 ntAPPRIS P1 TSL 3 BASIC3.57□□□□□ -1.84
NPAS1Q99742 PRO1804-201ENST00000623780 2050 ntBASIC3.57□□□□□ -1.84
NPAS1Q99742 AC005609.4-201ENST00000625071 447 ntBASIC3.57□□□□□ -1.84
NPAS1Q99742 TTN-AS1-263ENST00000627527 784 ntTSL 5 BASIC3.57□□□□□ -1.84
NPAS1Q99742 OR6C2-203ENST00000641516 1682 ntAPPRIS P1 BASIC3.57□□□□□ -1.84
NPAS1Q99742 RFX7-201ENST00000559447 10426 ntAPPRIS P5 TSL 5 BASIC3.57□□□□□ -1.84
NPAS1Q99742 CNOT4-202ENST00000356162 2594 ntTSL 5 BASIC3.57□□□□□ -1.84
NPAS1Q99742 MINPP1-204ENST00000536010 2215 ntTSL 1 (best) BASIC3.56□□□□□ -1.84
NPAS1Q99742 MRPL42-206ENST00000549982 15582 ntAPPRIS P2 TSL 1 (best) BASIC3.56□□□□□ -1.84
NPAS1Q99742 BDP1P-201ENST00000582658 1990 ntBASIC3.56□□□□□ -1.84
NPAS1Q99742 PCLO-206ENST00000437081 3786 ntTSL 1 (best) BASIC3.56□□□□□ -1.84
NPAS1Q99742 TRIQK-204ENST00000517858 1882 ntTSL 3 BASIC3.56□□□□□ -1.84
NPAS1Q99742 LRRN3-203ENST00000422987 3513 ntAPPRIS P1 TSL 1 (best) BASIC3.56□□□□□ -1.84
NPAS1Q99742 CDH10-201ENST00000264463 3438 ntAPPRIS P1 TSL 1 (best) BASIC3.56□□□□□ -1.84
NPAS1Q99742 UACA-202ENST00000379983 4859 ntAPPRIS ALT2 TSL 5 BASIC3.56□□□□□ -1.84
NPAS1Q99742 RNY4P14-201ENST00000363656 96 ntBASIC3.56□□□□□ -1.84
NPAS1Q99742 RNU6-288P-201ENST00000363690 104 ntBASIC3.56□□□□□ -1.84
NPAS1Q99742 RN7SKP280-201ENST00000364196 304 ntBASIC3.56□□□□□ -1.84
NPAS1Q99742 MIR454-201ENST00000390180 115 ntBASIC3.56□□□□□ -1.84
NPAS1Q99742 SNORD37.1-201ENST00000390968 65 ntBASIC3.56□□□□□ -1.84
NPAS1Q99742 MDM2-208ENST00000393410 732 ntTSL 1 (best) BASIC3.56□□□□□ -1.84
Retrieved 100 of 98,524 protein–RNA pairs in 136.7 ms