Protein–RNA interactions for Protein: Q7Z3B4

NUP54, Nucleoporin p54, humanhuman

Predictions only

Length 507 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54Q7Z3B4 LINC02500-201ENST00000512547 493 ntTSL 3 BASIC3.2□□□□□ -1.9
NUP54Q7Z3B4 AC106744.2-202ENST00000515123 448 ntTSL 3 BASIC3.2□□□□□ -1.9
NUP54Q7Z3B4 LINC02374-202ENST00000515222 578 ntTSL 4 BASIC3.2□□□□□ -1.9
NUP54Q7Z3B4 AC106895.1-201ENST00000515825 548 ntTSL 4 BASIC3.2□□□□□ -1.9
NUP54Q7Z3B4 SNORA70.19-201ENST00000516717 90 ntBASIC3.2□□□□□ -1.9
NUP54Q7Z3B4 AC090796.1-201ENST00000520370 567 ntTSL 4 BASIC3.2□□□□□ -1.9
NUP54Q7Z3B4 AC060788.1-201ENST00000521318 469 ntBASIC3.2□□□□□ -1.9
NUP54Q7Z3B4 AC022878.1-201ENST00000530684 149 ntBASIC3.2□□□□□ -1.9
NUP54Q7Z3B4 AC239802.1-201ENST00000531288 406 ntTSL 5 BASIC3.2□□□□□ -1.9
NUP54Q7Z3B4 RRAS2-210ENST00000534746 993 ntTSL 2 BASIC3.2□□□□□ -1.9
NUP54Q7Z3B4 AP002373.1-201ENST00000544347 729 ntAPPRIS P1 TSL 3 BASIC3.2□□□□□ -1.9
NUP54Q7Z3B4 AC136188.1-201ENST00000546770 342 ntTSL 3 BASIC3.2□□□□□ -1.9
NUP54Q7Z3B4 CCNG2P1-201ENST00000549521 1000 ntBASIC3.2□□□□□ -1.9
NUP54Q7Z3B4 G2E3-AS1-204ENST00000552511 402 ntTSL 2 BASIC3.2□□□□□ -1.9
NUP54Q7Z3B4 AC068276.1-201ENST00000605793 379 ntBASIC3.2□□□□□ -1.9
NUP54Q7Z3B4 AC103858.1-201ENST00000607019 476 ntTSL 3 BASIC3.2□□□□□ -1.9
NUP54Q7Z3B4 RMST_8.1-201ENST00000610287 165 ntBASIC3.2□□□□□ -1.9
NUP54Q7Z3B4 AC073114.1-201ENST00000612027 490 ntBASIC3.2□□□□□ -1.9
NUP54Q7Z3B4 AL592295.2-201ENST00000612578 206 ntBASIC3.2□□□□□ -1.9
NUP54Q7Z3B4 AC068506.1-202ENST00000613388 545 ntTSL 3 BASIC3.2□□□□□ -1.9
NUP54Q7Z3B4 TUG1_2.1-201ENST00000614234 87 ntBASIC3.2□□□□□ -1.9
NUP54Q7Z3B4 AC090132.2-201ENST00000615881 347 ntBASIC3.2□□□□□ -1.9
NUP54Q7Z3B4 TFG-209ENST00000615993 1244 ntTSL 1 (best) BASIC3.2□□□□□ -1.9
NUP54Q7Z3B4 HOTAIRM1_2.1-201ENST00000616712 215 ntBASIC3.2□□□□□ -1.9
NUP54Q7Z3B4 AC092140.2-201ENST00000618027 521 ntBASIC3.2□□□□□ -1.9
NUP54Q7Z3B4 HOTTIP_4.1-201ENST00000618195 165 ntBASIC3.2□□□□□ -1.9
NUP54Q7Z3B4 AC009878.1-201ENST00000621819 340 ntBASIC3.2□□□□□ -1.9
NUP54Q7Z3B4 AC073308.1-201ENST00000623696 305 ntBASIC3.2□□□□□ -1.9
NUP54Q7Z3B4 SENP7-204ENST00000394085 1483 ntTSL 1 (best) BASIC3.2□□□□□ -1.9
NUP54Q7Z3B4 AC138915.1-201ENST00000565427 1685 ntBASIC3.2□□□□□ -1.9
NUP54Q7Z3B4 KCNH7-204ENST00000618399 3713 ntTSL 5 BASIC3.2□□□□□ -1.9
NUP54Q7Z3B4 RGS22-214ENST00000523287 4033 ntAPPRIS ALT2 TSL 2 BASIC3.2□□□□□ -1.9
NUP54Q7Z3B4 DPP10-205ENST00000410059 6278 ntAPPRIS ALT2 TSL 1 (best) BASIC3.2□□□□□ -1.9
NUP54Q7Z3B4 AC073073.2-201ENST00000609827 2578 ntBASIC3.19□□□□□ -1.9
NUP54Q7Z3B4 OR52E6-201ENST00000329322 970 ntAPPRIS P1 BASIC3.19□□□□□ -1.9
NUP54Q7Z3B4 DPPA3-201ENST00000345088 1079 ntAPPRIS P1 TSL 1 (best) BASIC3.19□□□□□ -1.9
NUP54Q7Z3B4 C6orf62-201ENST00000378102 741 ntTSL 5 BASIC3.19□□□□□ -1.9
NUP54Q7Z3B4 SNORA36C-201ENST00000384289 132 ntBASIC3.19□□□□□ -1.9
NUP54Q7Z3B4 RNU6-1035P-201ENST00000384477 107 ntBASIC3.19□□□□□ -1.9
NUP54Q7Z3B4 MIR7-3-201ENST00000384898 110 ntBASIC3.19□□□□□ -1.9
NUP54Q7Z3B4 MIR670-201ENST00000390142 98 ntBASIC3.19□□□□□ -1.9
NUP54Q7Z3B4 RNU6-55P-201ENST00000411092 107 ntBASIC3.19□□□□□ -1.9
NUP54Q7Z3B4 RNU6-954P-201ENST00000411355 107 ntBASIC3.19□□□□□ -1.9
NUP54Q7Z3B4 ATP2B2-IT2-201ENST00000419591 507 ntTSL 2 BASIC3.19□□□□□ -1.9
NUP54Q7Z3B4 AL356583.2-201ENST00000426536 280 ntBASIC3.19□□□□□ -1.9
NUP54Q7Z3B4 RPL23AP69-201ENST00000431134 458 ntBASIC3.19□□□□□ -1.9
NUP54Q7Z3B4 AL512844.2-201ENST00000433990 593 ntBASIC3.19□□□□□ -1.9
NUP54Q7Z3B4 PATE1-202ENST00000437148 457 ntAPPRIS ALT2 TSL 1 (best) BASIC3.19□□□□□ -1.9
NUP54Q7Z3B4 ARPC3P1-201ENST00000437218 533 ntBASIC3.19□□□□□ -1.9
NUP54Q7Z3B4 AC012070.1-201ENST00000442062 427 ntTSL 3 BASIC3.19□□□□□ -1.9
NUP54Q7Z3B4 IGKV3D-7-201ENST00000443397 384 ntAPPRIS P1 BASIC3.19□□□□□ -1.9
NUP54Q7Z3B4 AL451164.2-201ENST00000445932 597 ntTSL 2 BASIC3.19□□□□□ -1.9
NUP54Q7Z3B4 AL139081.1-201ENST00000452207 382 ntTSL 3 BASIC3.19□□□□□ -1.9
NUP54Q7Z3B4 SNRPGP9-201ENST00000456025 225 ntBASIC3.19□□□□□ -1.9
NUP54Q7Z3B4 AC108059.3-201ENST00000456388 214 ntBASIC3.19□□□□□ -1.9
NUP54Q7Z3B4 AL359095.1-201ENST00000457383 635 ntTSL 3 BASIC3.19□□□□□ -1.9
NUP54Q7Z3B4 RPS4XP2-201ENST00000458402 793 ntBASIC3.19□□□□□ -1.9
NUP54Q7Z3B4 LINC01036-201ENST00000458683 858 ntTSL 3 BASIC3.19□□□□□ -1.9
NUP54Q7Z3B4 BCL2L15-204ENST00000471267 267 ntTSL 1 (best) BASIC3.19□□□□□ -1.9
NUP54Q7Z3B4 RPS26P21-201ENST00000475397 348 ntBASIC3.19□□□□□ -1.9
NUP54Q7Z3B4 RN7SL293P-201ENST00000481765 281 ntBASIC3.19□□□□□ -1.9
NUP54Q7Z3B4 AL049874.1-201ENST00000489560 388 ntBASIC3.19□□□□□ -1.9
NUP54Q7Z3B4 ATP6V1G3-204ENST00000489986 449 ntTSL 1 (best) BASIC3.19□□□□□ -1.9
NUP54Q7Z3B4 AC092185.1-201ENST00000491371 97 ntBASIC3.19□□□□□ -1.9
NUP54Q7Z3B4 AC093831.1-201ENST00000509166 434 ntTSL 3 BASIC3.19□□□□□ -1.9
NUP54Q7Z3B4 AC022616.6-201ENST00000520479 119 ntBASIC3.19□□□□□ -1.9
NUP54Q7Z3B4 AC021739.4-201ENST00000561417 569 ntTSL 4 BASIC3.19□□□□□ -1.9
NUP54Q7Z3B4 AC112191.3-201ENST00000604371 277 ntBASIC3.19□□□□□ -1.9
NUP54Q7Z3B4 AL136363.1-201ENST00000605349 337 ntBASIC3.19□□□□□ -1.9
NUP54Q7Z3B4 Z69908.1-201ENST00000622603 247 ntBASIC3.19□□□□□ -1.9
NUP54Q7Z3B4 AC215522.3-201ENST00000635602 354 ntTSL 5 BASIC3.19□□□□□ -1.9
NUP54Q7Z3B4 hsa-mir-4776-1.1-201ENST00000636364 80 ntBASIC3.19□□□□□ -1.9
NUP54Q7Z3B4 ROCK2-203ENST00000401753 4017 ntTSL 1 (best) BASIC3.19□□□□□ -1.9
NUP54Q7Z3B4 EVI2B-202ENST00000577894 1597 ntAPPRIS P1 TSL 2 BASIC3.19□□□□□ -1.9
NUP54Q7Z3B4 TLR10-206ENST00000508334 2616 ntAPPRIS P1 TSL 1 (best) BASIC3.19□□□□□ -1.9
NUP54Q7Z3B4 TUSC7-203ENST00000477539 2415 ntTSL 1 (best) BASIC3.19□□□□□ -1.9
NUP54Q7Z3B4 PTBP2-211ENST00000609116 12014 ntAPPRIS ALT1 TSL 1 (best) BASIC3.19□□□□□ -1.9
NUP54Q7Z3B4 AL049641.1-201ENST00000441055 1948 ntBASIC3.19□□□□□ -1.9
NUP54Q7Z3B4 ZNF804A-202ENST00000613975 3986 ntTSL 5 BASIC3.19□□□□□ -1.9
NUP54Q7Z3B4 SEPT7-205ENST00000432293 1362 ntTSL 1 (best) BASIC3.18□□□□□ -1.9
NUP54Q7Z3B4 OR6C70-201ENST00000327335 939 ntAPPRIS P1 BASIC3.18□□□□□ -1.9
NUP54Q7Z3B4 Y_RNA.77-201ENST00000362962 107 ntBASIC3.18□□□□□ -1.9
NUP54Q7Z3B4 U3.4-201ENST00000363352 213 ntBASIC3.18□□□□□ -1.9
NUP54Q7Z3B4 CRISP3-203ENST00000371159 872 ntAPPRIS ALT2 TSL 5 BASIC3.18□□□□□ -1.9
NUP54Q7Z3B4 AL390198.1-201ENST00000376445 320 ntTSL 2 BASIC3.18□□□□□ -1.9
NUP54Q7Z3B4 SNORD116-1-201ENST00000384335 95 ntBASIC3.18□□□□□ -1.9
NUP54Q7Z3B4 UBE2FP1-201ENST00000416536 447 ntBASIC3.18□□□□□ -1.9
NUP54Q7Z3B4 USP9YP13-201ENST00000417797 480 ntBASIC3.18□□□□□ -1.9
NUP54Q7Z3B4 AC010967.2-201ENST00000418451 333 ntTSL 2 BASIC3.18□□□□□ -1.9
NUP54Q7Z3B4 AL157786.1-206ENST00000424422 551 ntTSL 3 BASIC3.18□□□□□ -1.9
NUP54Q7Z3B4 SLC44A3-AS1-205ENST00000424505 612 ntBASIC3.18□□□□□ -1.9
NUP54Q7Z3B4 AC008850.1-201ENST00000427546 362 ntBASIC3.18□□□□□ -1.9
NUP54Q7Z3B4 CYCSP35-201ENST00000451978 304 ntBASIC3.18□□□□□ -1.9
NUP54Q7Z3B4 RPL31P3-201ENST00000458430 332 ntBASIC3.18□□□□□ -1.9
NUP54Q7Z3B4 RNA5SP269-201ENST00000459032 137 ntBASIC3.18□□□□□ -1.9
NUP54Q7Z3B4 AC025518.1-201ENST00000479856 347 ntBASIC3.18□□□□□ -1.9
NUP54Q7Z3B4 RPS15AP36-201ENST00000492022 382 ntBASIC3.18□□□□□ -1.9
NUP54Q7Z3B4 ANKRD36B-207ENST00000497329 649 ntTSL 1 (best) BASIC3.18□□□□□ -1.9
NUP54Q7Z3B4 AC105343.1-201ENST00000505586 358 ntTSL 3 BASIC3.18□□□□□ -1.9
NUP54Q7Z3B4 AC009901.1-201ENST00000506703 541 ntBASIC3.18□□□□□ -1.9
Retrieved 100 of 98,524 protein–RNA pairs in 116.4 ms