Protein–RNA interactions for Protein: Q3V6T2

CCDC88A, Girdin, humanhuman

Predictions only

Length 1,871 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88AQ3V6T2 SCN7A-207ENST00000621965 7186 ntAPPRIS P1 TSL 5 BASIC2.05□□□□□ -2.08
CCDC88AQ3V6T2 RNU6-40P-201ENST00000384254 107 ntBASIC2.05□□□□□ -2.08
CCDC88AQ3V6T2 EEF1E1-BLOC1S5-201ENST00000397456 768 ntAPPRIS P1 TSL 3 BASIC2.05□□□□□ -2.08
CCDC88AQ3V6T2 RNU2-25P-201ENST00000411041 191 ntBASIC2.05□□□□□ -2.08
CCDC88AQ3V6T2 AC012370.1-201ENST00000419244 530 ntTSL 3 BASIC2.05□□□□□ -2.08
CCDC88AQ3V6T2 RPS15AP40-201ENST00000419621 391 ntBASIC2.05□□□□□ -2.08
CCDC88AQ3V6T2 AC093110.1-201ENST00000456363 602 ntTSL 2 BASIC2.05□□□□□ -2.08
CCDC88AQ3V6T2 AC022511.1-201ENST00000544089 476 ntTSL 2 BASIC2.05□□□□□ -2.08
CCDC88AQ3V6T2 AL157911.1-202ENST00000554123 502 ntTSL 3 BASIC2.05□□□□□ -2.08
CCDC88AQ3V6T2 AL161670.1-201ENST00000554348 137 ntBASIC2.05□□□□□ -2.08
CCDC88AQ3V6T2 AC105094.2-203ENST00000590357 555 ntTSL 4 BASIC2.05□□□□□ -2.08
CCDC88AQ3V6T2 AC012254.1-201ENST00000592747 200 ntTSL 3 BASIC2.05□□□□□ -2.08
CCDC88AQ3V6T2 ZNF734P-201ENST00000419494 1534 ntBASIC2.05□□□□□ -2.08
CCDC88AQ3V6T2 ZNF519P1-201ENST00000449011 1626 ntBASIC2.04□□□□□ -2.08
CCDC88AQ3V6T2 IL33-203ENST00000456383 2501 ntTSL 5 BASIC2.04□□□□□ -2.08
CCDC88AQ3V6T2 SAMSN1-202ENST00000400564 1382 ntTSL 1 (best) BASIC2.04□□□□□ -2.08
CCDC88AQ3V6T2 RNU6-252P-201ENST00000363232 107 ntBASIC2.04□□□□□ -2.08
CCDC88AQ3V6T2 Y_RNA.354-201ENST00000365448 111 ntBASIC2.04□□□□□ -2.08
CCDC88AQ3V6T2 RNU6-1226P-201ENST00000384317 107 ntBASIC2.04□□□□□ -2.08
CCDC88AQ3V6T2 TATDN1P1-201ENST00000414123 891 ntBASIC2.04□□□□□ -2.08
CCDC88AQ3V6T2 MRLN-201ENST00000414264 422 ntAPPRIS P2 TSL 1 (best) BASIC2.04□□□□□ -2.08
CCDC88AQ3V6T2 UBE2V1P9-201ENST00000414760 368 ntBASIC2.04□□□□□ -2.08
CCDC88AQ3V6T2 RABEPKP1-201ENST00000440529 1026 ntBASIC2.04□□□□□ -2.08
CCDC88AQ3V6T2 RPS15AP17-201ENST00000470598 390 ntBASIC2.04□□□□□ -2.08
CCDC88AQ3V6T2 SETP11-201ENST00000473027 690 ntBASIC2.04□□□□□ -2.08
CCDC88AQ3V6T2 AL121594.1-201ENST00000475906 575 ntBASIC2.04□□□□□ -2.08
CCDC88AQ3V6T2 AC079203.1-201ENST00000487972 404 ntBASIC2.04□□□□□ -2.08
CCDC88AQ3V6T2 AC093770.1-201ENST00000511559 571 ntBASIC2.04□□□□□ -2.08
CCDC88AQ3V6T2 RNA5SP102-201ENST00000516865 106 ntBASIC2.04□□□□□ -2.08
CCDC88AQ3V6T2 IGKV2D-36-201ENST00000518643 226 ntBASIC2.04□□□□□ -2.08
CCDC88AQ3V6T2 AC104997.1-201ENST00000519761 717 ntBASIC2.04□□□□□ -2.08
CCDC88AQ3V6T2 OR10V3P-201ENST00000525712 725 ntBASIC2.04□□□□□ -2.08
CCDC88AQ3V6T2 ZNF84-205ENST00000535439 647 ntTSL 5 BASIC2.04□□□□□ -2.08
CCDC88AQ3V6T2 LINC01515-204ENST00000595269 402 ntTSL 5 BASIC2.04□□□□□ -2.08
CCDC88AQ3V6T2 AC073569.3-201ENST00000619055 682 ntBASIC2.04□□□□□ -2.08
CCDC88AQ3V6T2 OR8K3-202ENST00000623845 939 ntAPPRIS P1 BASIC2.04□□□□□ -2.08
CCDC88AQ3V6T2 MTND4P8-201ENST00000514997 1362 ntBASIC2.04□□□□□ -2.08
CCDC88AQ3V6T2 GPR34-201ENST00000378138 1815 ntAPPRIS P1 TSL 1 (best) BASIC2.03□□□□□ -2.08
CCDC88AQ3V6T2 CD24P4-201ENST00000382840 243 ntBASIC2.03□□□□□ -2.08
CCDC88AQ3V6T2 AL591034.1-201ENST00000407447 340 ntBASIC2.03□□□□□ -2.08
CCDC88AQ3V6T2 AL445123.1-201ENST00000422023 446 ntTSL 2 BASIC2.03□□□□□ -2.08
CCDC88AQ3V6T2 AL354977.1-201ENST00000438147 679 ntTSL 5 BASIC2.03□□□□□ -2.08
CCDC88AQ3V6T2 AL645638.1-201ENST00000440519 361 ntBASIC2.03□□□□□ -2.08
CCDC88AQ3V6T2 FAR2P1-203ENST00000440931 187 ntTSL 2 BASIC2.03□□□□□ -2.08
CCDC88AQ3V6T2 HSFY3P-201ENST00000444242 1191 ntBASIC2.03□□□□□ -2.08
CCDC88AQ3V6T2 UMAD1-204ENST00000482067 569 ntTSL 5 BASIC2.03□□□□□ -2.08
CCDC88AQ3V6T2 MTRNR2L5-201ENST00000512524 739 ntAPPRIS P1 BASIC2.03□□□□□ -2.08
CCDC88AQ3V6T2 LINC02364-201ENST00000514802 687 ntTSL 2 BASIC2.03□□□□□ -2.08
CCDC88AQ3V6T2 AC097535.1-201ENST00000515263 332 ntTSL 3 BASIC2.03□□□□□ -2.08
CCDC88AQ3V6T2 HDAC2-AS2-206ENST00000517965 850 ntTSL 3 BASIC2.03□□□□□ -2.08
CCDC88AQ3V6T2 AC107882.1-201ENST00000530837 477 ntTSL 3 BASIC2.03□□□□□ -2.08
CCDC88AQ3V6T2 AC008115.2-201ENST00000539988 241 ntTSL 3 BASIC2.03□□□□□ -2.08
CCDC88AQ3V6T2 LIVAR-201ENST00000578633 384 ntTSL 3 BASIC2.03□□□□□ -2.08
CCDC88AQ3V6T2 SUMO2P14-201ENST00000604488 293 ntBASIC2.03□□□□□ -2.08
CCDC88AQ3V6T2 CATSPERB-201ENST00000256343 3623 ntAPPRIS P2 TSL 1 (best) BASIC2.03□□□□□ -2.08
CCDC88AQ3V6T2 ZNF732-202ENST00000619749 2179 ntAPPRIS ALT2 TSL 2 BASIC2.03□□□□□ -2.08
CCDC88AQ3V6T2 MIR613-201ENST00000385248 95 ntBASIC2.03□□□□□ -2.09
CCDC88AQ3V6T2 MTND4P24-201ENST00000424002 397 ntBASIC2.03□□□□□ -2.09
CCDC88AQ3V6T2 FO393414.1-201ENST00000428697 1184 ntBASIC2.03□□□□□ -2.09
CCDC88AQ3V6T2 AC017048.2-201ENST00000431455 822 ntTSL 3 BASIC2.03□□□□□ -2.09
CCDC88AQ3V6T2 DIAPH3-AS1-203ENST00000435636 467 ntTSL 2 BASIC2.03□□□□□ -2.09
CCDC88AQ3V6T2 MTND2P19-201ENST00000449129 1012 ntBASIC2.03□□□□□ -2.09
CCDC88AQ3V6T2 RPL23AP41-201ENST00000484754 458 ntBASIC2.03□□□□□ -2.09
CCDC88AQ3V6T2 AC090753.1-201ENST00000522087 331 ntTSL 3 BASIC2.03□□□□□ -2.09
CCDC88AQ3V6T2 EEF1B2P4-201ENST00000551398 348 ntBASIC2.03□□□□□ -2.09
CCDC88AQ3V6T2 AC095057.3-201ENST00000567102 1157 ntBASIC2.03□□□□□ -2.09
CCDC88AQ3V6T2 AL512598.1-201ENST00000610158 273 ntBASIC2.03□□□□□ -2.09
CCDC88AQ3V6T2 AC093838.1-201ENST00000613014 469 ntBASIC2.03□□□□□ -2.09
CCDC88AQ3V6T2 KBTBD2-208ENST00000621876 1196 ntTSL 5 BASIC2.03□□□□□ -2.09
CCDC88AQ3V6T2 LINC01359-207ENST00000634799 487 ntTSL 5 BASIC2.03□□□□□ -2.09
CCDC88AQ3V6T2 AC020571.1-202ENST00000433933 1413 ntTSL 1 (best) BASIC2.03□□□□□ -2.09
CCDC88AQ3V6T2 CNBD1-202ENST00000518476 1594 ntAPPRIS P2 TSL 1 (best) BASIC2.03□□□□□ -2.09
CCDC88AQ3V6T2 CDK1-209ENST00000614696 1884 ntTSL 5 BASIC2.03□□□□□ -2.09
CCDC88AQ3V6T2 AL445989.1-202ENST00000418943 776 ntTSL 2 BASIC2.02□□□□□ -2.09
CCDC88AQ3V6T2 AL390879.2-204ENST00000438602 582 ntTSL 3 BASIC2.02□□□□□ -2.09
CCDC88AQ3V6T2 ATP5J2P3-201ENST00000451550 258 ntBASIC2.02□□□□□ -2.09
CCDC88AQ3V6T2 HMGN3P1-201ENST00000453847 193 ntBASIC2.02□□□□□ -2.09
CCDC88AQ3V6T2 AP002345.1-201ENST00000456493 928 ntBASIC2.02□□□□□ -2.09
CCDC88AQ3V6T2 AC015720.1-201ENST00000565251 277 ntBASIC2.02□□□□□ -2.09
CCDC88AQ3V6T2 AC074051.3-201ENST00000570238 358 ntBASIC2.02□□□□□ -2.09
CCDC88AQ3V6T2 AC011518.1-202ENST00000592668 407 ntTSL 5 BASIC2.02□□□□□ -2.09
CCDC88AQ3V6T2 AC110079.1-202ENST00000635213 138 ntBASIC2.02□□□□□ -2.09
CCDC88AQ3V6T2 Z98749.2-208ENST00000381646 500 ntBASIC2.01□□□□□ -2.09
CCDC88AQ3V6T2 RNA5SP489-201ENST00000410986 109 ntBASIC2.01□□□□□ -2.09
CCDC88AQ3V6T2 AC010385.1-201ENST00000412374 256 ntBASIC2.01□□□□□ -2.09
CCDC88AQ3V6T2 AC233728.2-201ENST00000425348 757 ntBASIC2.01□□□□□ -2.09
CCDC88AQ3V6T2 MTCYBP34-201ENST00000439552 670 ntBASIC2.01□□□□□ -2.09
CCDC88AQ3V6T2 AC024597.1-201ENST00000442753 706 ntTSL 5 BASIC2.01□□□□□ -2.09
CCDC88AQ3V6T2 ZNF736P6Y-201ENST00000447526 1213 ntBASIC2.01□□□□□ -2.09
CCDC88AQ3V6T2 AC004884.2-201ENST00000476569 546 ntTSL 4 BASIC2.01□□□□□ -2.09
CCDC88AQ3V6T2 RPS15AP36-201ENST00000492022 382 ntBASIC2.01□□□□□ -2.09
CCDC88AQ3V6T2 ATP5EP1-201ENST00000510257 156 ntBASIC2.01□□□□□ -2.09
CCDC88AQ3V6T2 AC015468.3-201ENST00000518967 417 ntTSL 2 BASIC2.01□□□□□ -2.09
CCDC88AQ3V6T2 AP003730.2-201ENST00000526385 546 ntTSL 3 BASIC2.01□□□□□ -2.09
CCDC88AQ3V6T2 LINC01467-201ENST00000554211 1187 ntTSL 1 (best) BASIC2.01□□□□□ -2.09
CCDC88AQ3V6T2 AL133279.2-201ENST00000556546 428 ntTSL 3 BASIC2.01□□□□□ -2.09
CCDC88AQ3V6T2 AC008962.1-201ENST00000605729 304 ntBASIC2.01□□□□□ -2.09
CCDC88AQ3V6T2 AL390240.1-201ENST00000612950 384 ntBASIC2.01□□□□□ -2.09
CCDC88AQ3V6T2 AC018755.4-201ENST00000619715 454 ntBASIC2.01□□□□□ -2.09
CCDC88AQ3V6T2 AC023490.1-202ENST00000620909 820 ntTSL 5 BASIC2.01□□□□□ -2.09
Retrieved 100 of 98,524 protein–RNA pairs in 102.6 ms