Protein–RNA interactions for Protein: P78317

RNF4, E3 ubiquitin-protein ligase RNF4, humanhuman

Predictions only

Length 190 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RNF4P78317 AC011933.1-201ENST00000413334 321 ntBASIC4.56□□□□□ -1.68
RNF4P78317 AC016769.2-201ENST00000414815 475 ntBASIC4.56□□□□□ -1.68
RNF4P78317 AC063979.1-201ENST00000415539 377 ntBASIC4.56□□□□□ -1.68
RNF4P78317 UBE2V1P4-201ENST00000425374 344 ntBASIC4.56□□□□□ -1.68
RNF4P78317 AL451062.2-201ENST00000427515 271 ntBASIC4.56□□□□□ -1.68
RNF4P78317 AC093151.1-201ENST00000427711 313 ntBASIC4.56□□□□□ -1.68
RNF4P78317 MTATP6P4-201ENST00000427725 675 ntBASIC4.56□□□□□ -1.68
RNF4P78317 AL592045.1-201ENST00000429867 352 ntBASIC4.56□□□□□ -1.68
RNF4P78317 AC093414.1-201ENST00000434712 514 ntBASIC4.56□□□□□ -1.68
RNF4P78317 AL591501.1-201ENST00000439992 495 ntTSL 5 BASIC4.56□□□□□ -1.68
RNF4P78317 H2AFZP6-201ENST00000444403 394 ntBASIC4.56□□□□□ -1.68
RNF4P78317 AL645608.2-201ENST00000458555 471 ntTSL 2 BASIC4.56□□□□□ -1.68
RNF4P78317 AC245028.2-201ENST00000458673 253 ntBASIC4.56□□□□□ -1.68
RNF4P78317 AC097372.3-201ENST00000503593 522 ntTSL 3 BASIC4.56□□□□□ -1.68
RNF4P78317 AC108145.1-201ENST00000503770 153 ntBASIC4.56□□□□□ -1.68
RNF4P78317 AC017037.1-201ENST00000508460 471 ntBASIC4.56□□□□□ -1.68
RNF4P78317 LINC01256-201ENST00000513270 508 ntTSL 2 BASIC4.56□□□□□ -1.68
RNF4P78317 RNU6-264P-201ENST00000517134 104 ntBASIC4.56□□□□□ -1.68
RNF4P78317 AL359237.1-202ENST00000556168 487 ntTSL 5 BASIC4.56□□□□□ -1.68
RNF4P78317 AC068397.1-201ENST00000560337 531 ntTSL 2 BASIC4.56□□□□□ -1.68
RNF4P78317 C18orf54-203ENST00000578138 776 ntTSL 3 BASIC4.56□□□□□ -1.68
RNF4P78317 AC087783.2-201ENST00000605070 562 ntBASIC4.56□□□□□ -1.68
RNF4P78317 GHR-208ENST00000612382 4699 ntAPPRIS P1 TSL 5 BASIC4.56□□□□□ -1.68
RNF4P78317 OR4C15-202ENST00000642128 951 ntAPPRIS P1 BASIC4.56□□□□□ -1.68
RNF4P78317 MEG8-223ENST00000638012 3757 ntTSL 5 BASIC4.56□□□□□ -1.68
RNF4P78317 AC021355.1-202ENST00000519996 1633 ntTSL 2 BASIC4.56□□□□□ -1.68
RNF4P78317 MCMDC2-201ENST00000313616 2043 ntTSL 2 BASIC4.56□□□□□ -1.68
RNF4P78317 NLRP11-202ENST00000589824 3231 ntAPPRIS ALT2 TSL 5 BASIC4.56□□□□□ -1.68
RNF4P78317 ATP13A3-211ENST00000619199 5227 ntTSL 2 BASIC4.56□□□□□ -1.68
RNF4P78317 AL731532.2-201ENST00000623542 1953 ntBASIC4.56□□□□□ -1.68
RNF4P78317 ADAM5-202ENST00000399789 1942 ntBASIC4.56□□□□□ -1.68
RNF4P78317 SEC31A-201ENST00000264405 3447 ntTSL 2 BASIC4.56□□□□□ -1.68
RNF4P78317 HGF-201ENST00000222390 5989 ntAPPRIS P3 TSL 1 (best) BASIC4.56□□□□□ -1.68
RNF4P78317 ATF7IP-209ENST00000536444 8774 ntAPPRIS ALT2 TSL 1 (best) BASIC4.56□□□□□ -1.68
RNF4P78317 MAPK10-286ENST00000641208 8747 ntBASIC4.55□□□□□ -1.68
RNF4P78317 FGF12-204ENST00000445105 5406 ntTSL 1 (best) BASIC4.55□□□□□ -1.68
RNF4P78317 WDR35-202ENST00000345530 6960 ntAPPRIS ALT1 TSL 1 (best) BASIC4.55□□□□□ -1.68
RNF4P78317 AL050331.3-201ENST00000448740 2081 ntTSL 2 BASIC4.55□□□□□ -1.68
RNF4P78317 DNTTIP2-202ENST00000436063 5897 ntAPPRIS P1 TSL 1 (best) BASIC4.55□□□□□ -1.68
RNF4P78317 SNCA-AS1-201ENST00000501215 2646 ntTSL 2 BASIC4.55□□□□□ -1.68
RNF4P78317 RNU1-115P-201ENST00000365329 160 ntBASIC4.55□□□□□ -1.68
RNF4P78317 Y_RNA.534-201ENST00000384599 112 ntBASIC4.55□□□□□ -1.68
RNF4P78317 RNU6-1222P-201ENST00000384615 107 ntBASIC4.55□□□□□ -1.68
RNF4P78317 AL158071.1-201ENST00000430315 461 ntBASIC4.55□□□□□ -1.68
RNF4P78317 RPL23AP56-201ENST00000460778 453 ntBASIC4.55□□□□□ -1.68
RNF4P78317 AC074033.2-201ENST00000480669 535 ntTSL 3 BASIC4.55□□□□□ -1.68
RNF4P78317 AC010255.1-201ENST00000504829 731 ntTSL 5 BASIC4.55□□□□□ -1.68
RNF4P78317 SUMO2P6-201ENST00000505273 288 ntBASIC4.55□□□□□ -1.68
RNF4P78317 LEF1-218ENST00000512172 598 ntTSL 2 BASIC4.55□□□□□ -1.68
RNF4P78317 RNU6-307P-201ENST00000516743 106 ntBASIC4.55□□□□□ -1.68
RNF4P78317 AC069113.1-201ENST00000517763 267 ntBASIC4.55□□□□□ -1.68
RNF4P78317 PIGY-201ENST00000527353 217 ntAPPRIS P1 BASIC4.55□□□□□ -1.68
RNF4P78317 AC091564.3-201ENST00000527398 429 ntTSL 3 BASIC4.55□□□□□ -1.68
RNF4P78317 SNHG1-210ENST00000539303 240 ntTSL 3 BASIC4.55□□□□□ -1.68
RNF4P78317 MIR548AC-201ENST00000585049 88 ntBASIC4.55□□□□□ -1.68
RNF4P78317 Mico1.1-201ENST00000611698 204 ntBASIC4.55□□□□□ -1.68
RNF4P78317 BX005214.3-202ENST00000619809 325 ntBASIC4.55□□□□□ -1.68
RNF4P78317 AC015967.1-201ENST00000619893 476 ntBASIC4.55□□□□□ -1.68
RNF4P78317 MPP6-209ENST00000625307 126 ntTSL 5 BASIC4.55□□□□□ -1.68
RNF4P78317 AL512643.1-201ENST00000635735 524 ntBASIC4.55□□□□□ -1.68
RNF4P78317 LYST-202ENST00000389794 12985 ntTSL 5 BASIC4.55□□□□□ -1.68
RNF4P78317 PRLR-220ENST00000620785 11063 ntTSL 5 BASIC4.55□□□□□ -1.68
RNF4P78317 AC009812.4-201ENST00000569134 1805 ntBASIC4.55□□□□□ -1.68
RNF4P78317 GALNT3-202ENST00000409882 2107 ntTSL 1 (best) BASIC4.55□□□□□ -1.68
RNF4P78317 FAM204A-203ENST00000369183 13889 ntAPPRIS P1 TSL 1 (best) BASIC4.55□□□□□ -1.68
RNF4P78317 TECRL-201ENST00000381210 3573 ntAPPRIS P1 TSL 1 (best) BASIC4.55□□□□□ -1.68
RNF4P78317 AC018529.3-201ENST00000624212 2254 ntBASIC4.55□□□□□ -1.68
RNF4P78317 KLHL13-201ENST00000262820 3972 ntAPPRIS P3 TSL 1 (best) BASIC4.55□□□□□ -1.68
RNF4P78317 C3orf58-202ENST00000441925 3260 ntTSL 2 BASIC4.54□□□□□ -1.68
RNF4P78317 STARD4-201ENST00000296632 4606 ntAPPRIS P1 TSL 2 BASIC4.54□□□□□ -1.68
RNF4P78317 AC087190.4-201ENST00000574616 8334 ntBASIC4.54□□□□□ -1.68
RNF4P78317 AP001273.1-201ENST00000624493 3152 ntBASIC4.54□□□□□ -1.68
RNF4P78317 SAMMSON-226ENST00000642089 1582 ntBASIC4.54□□□□□ -1.68
RNF4P78317 CCDC121-201ENST00000324364 2342 ntAPPRIS P3 TSL 1 (best) BASIC4.54□□□□□ -1.68
RNF4P78317 AL022322.2-201ENST00000624072 20397 ntBASIC4.54□□□□□ -1.68
RNF4P78317 PLCH1-201ENST00000334686 6128 ntAPPRIS P3 TSL 1 (best) BASIC4.54□□□□□ -1.68
RNF4P78317 RN7SKP103-201ENST00000363848 320 ntBASIC4.54□□□□□ -1.68
RNF4P78317 Y_RNA.188-201ENST00000363952 111 ntBASIC4.54□□□□□ -1.68
RNF4P78317 MT-TR-201ENST00000387439 65 ntBASIC4.54□□□□□ -1.68
RNF4P78317 AL357515.1-201ENST00000402967 542 ntBASIC4.54□□□□□ -1.68
RNF4P78317 SNORA11B-201ENST00000408175 129 ntBASIC4.54□□□□□ -1.68
RNF4P78317 AC007738.1-201ENST00000413892 348 ntBASIC4.54□□□□□ -1.68
RNF4P78317 TBCAP2-201ENST00000416175 326 ntBASIC4.54□□□□□ -1.68
RNF4P78317 AL078601.2-201ENST00000429444 474 ntTSL 2 BASIC4.54□□□□□ -1.68
RNF4P78317 AL645568.3-201ENST00000433683 316 ntBASIC4.54□□□□□ -1.68
RNF4P78317 AL772161.1-201ENST00000439130 476 ntBASIC4.54□□□□□ -1.68
RNF4P78317 AC000111.2-201ENST00000448200 210 ntBASIC4.54□□□□□ -1.68
RNF4P78317 U8.20-201ENST00000459445 131 ntBASIC4.54□□□□□ -1.68
RNF4P78317 RPL9P32-201ENST00000464118 620 ntBASIC4.54□□□□□ -1.68
RNF4P78317 AC092324.1-201ENST00000468671 324 ntBASIC4.54□□□□□ -1.68
RNF4P78317 RPL31P60-201ENST00000478450 367 ntBASIC4.54□□□□□ -1.68
RNF4P78317 AC083982.1-201ENST00000485679 344 ntBASIC4.54□□□□□ -1.68
RNF4P78317 AL049874.1-201ENST00000489560 388 ntBASIC4.54□□□□□ -1.68
RNF4P78317 AC073073.1-201ENST00000493920 463 ntBASIC4.54□□□□□ -1.68
RNF4P78317 AC105758.1-201ENST00000506038 399 ntBASIC4.54□□□□□ -1.68
RNF4P78317 AC116655.1-201ENST00000508324 901 ntBASIC4.54□□□□□ -1.68
RNF4P78317 RNA5SP392-201ENST00000516905 112 ntBASIC4.54□□□□□ -1.68
RNF4P78317 RNA5SP471-201ENST00000516971 106 ntBASIC4.54□□□□□ -1.68
RNF4P78317 RNU6-1271P-201ENST00000517049 105 ntBASIC4.54□□□□□ -1.68
RNF4P78317 AC009643.1-201ENST00000532030 391 ntBASIC4.54□□□□□ -1.68
Retrieved 100 of 98,524 protein–RNA pairs in 100.2 ms