Protein–RNA interactions for Protein: P49711

CTCF, Transcriptional repressor CTCF, humanhuman

Predicted RBP Predictions only

Length 727 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CTCFP49711 MTCYBP36-201ENST00000404146 440 ntBASIC3.8□□□□□ -1.8
CTCFP49711 AL365356.1-201ENST00000411512 736 ntTSL 3 BASIC3.8□□□□□ -1.8
CTCFP49711 AL359704.1-201ENST00000411586 781 ntBASIC3.8□□□□□ -1.8
CTCFP49711 AL023581.1-201ENST00000423500 455 ntTSL 2 BASIC3.8□□□□□ -1.8
CTCFP49711 CYCSP46-201ENST00000423569 204 ntBASIC3.8□□□□□ -1.8
CTCFP49711 AL391336.1-201ENST00000424678 484 ntTSL 3 BASIC3.8□□□□□ -1.8
CTCFP49711 AC022018.1-201ENST00000430685 241 ntBASIC3.8□□□□□ -1.8
CTCFP49711 AC105272.1-201ENST00000438604 198 ntBASIC3.8□□□□□ -1.8
CTCFP49711 AC093156.1-201ENST00000440382 670 ntBASIC3.8□□□□□ -1.8
CTCFP49711 AC024908.1-202ENST00000441907 764 ntTSL 2 BASIC3.8□□□□□ -1.8
CTCFP49711 AL359915.2-203ENST00000457043 540 ntTSL 3 BASIC3.8□□□□□ -1.8
CTCFP49711 AC093278.1-201ENST00000494700 600 ntBASIC3.8□□□□□ -1.8
CTCFP49711 CSN1S1-202ENST00000505782 871 ntAPPRIS ALT2 TSL 5 BASIC3.8□□□□□ -1.8
CTCFP49711 CSN1S1-204ENST00000507772 895 ntAPPRIS ALT2 TSL 5 BASIC3.8□□□□□ -1.8
CTCFP49711 AC004062.1-201ENST00000509926 645 ntBASIC3.8□□□□□ -1.8
CTCFP49711 AL138812.1-201ENST00000525573 471 ntTSL 3 BASIC3.8□□□□□ -1.8
CTCFP49711 AC092745.2-201ENST00000537764 620 ntTSL 3 BASIC3.8□□□□□ -1.8
CTCFP49711 AC079203.2-201ENST00000559867 387 ntTSL 2 BASIC3.8□□□□□ -1.8
CTCFP49711 AC092378.2-202ENST00000569328 445 ntTSL 3 BASIC3.8□□□□□ -1.8
CTCFP49711 AP005136.1-201ENST00000579765 429 ntBASIC3.8□□□□□ -1.8
CTCFP49711 AC008277.1-203ENST00000594921 1149 ntTSL 5 BASIC3.8□□□□□ -1.8
CTCFP49711 AL158827.2-201ENST00000602494 330 ntBASIC3.8□□□□□ -1.8
CTCFP49711 AC104010.1-201ENST00000616889 150 ntBASIC3.8□□□□□ -1.8
CTCFP49711 C3orf85-208ENST00000622536 925 ntAPPRIS P5 TSL 5 BASIC3.8□□□□□ -1.8
CTCFP49711 SNORA50A-202ENST00000629536 136 ntBASIC3.8□□□□□ -1.8
CTCFP49711 AL691447.3-201ENST00000635020 330 ntBASIC3.8□□□□□ -1.8
CTCFP49711 MIR7153-201ENST00000637758 57 ntBASIC3.8□□□□□ -1.8
CTCFP49711 DPP10-205ENST00000410059 6278 ntAPPRIS ALT2 TSL 1 (best) BASIC3.8□□□□□ -1.8
CTCFP49711 ELL2P3-201ENST00000457883 1602 ntBASIC3.8□□□□□ -1.8
CTCFP49711 MUC15-205ENST00000529533 2084 ntTSL 1 (best) BASIC3.8□□□□□ -1.8
CTCFP49711 RAD17-206ENST00000358030 2648 ntTSL 1 (best) BASIC3.79□□□□□ -1.8
CTCFP49711 AC009902.3-201ENST00000606235 2172 ntBASIC3.79□□□□□ -1.8
CTCFP49711 P2RY12-201ENST00000302632 1766 ntAPPRIS P1 TSL 1 (best) BASIC3.79□□□□□ -1.8
CTCFP49711 TUG1-202ENST00000521091 2110 ntTSL 1 (best) BASIC3.79□□□□□ -1.8
CTCFP49711 TMPRSS11A-202ENST00000508048 3247 ntAPPRIS ALT2 TSL 1 (best) BASIC3.79□□□□□ -1.8
CTCFP49711 CCPG1-203ENST00000442196 3453 ntAPPRIS P1 TSL 2 BASIC3.79□□□□□ -1.8
CTCFP49711 TTTY13-201ENST00000330337 659 ntTSL 1 (best) BASIC3.79□□□□□ -1.8
CTCFP49711 RNU6-882P-201ENST00000391025 103 ntBASIC3.79□□□□□ -1.8
CTCFP49711 SPATA17-AS1-201ENST00000415765 420 ntTSL 5 BASIC3.79□□□□□ -1.8
CTCFP49711 AC017079.2-201ENST00000416102 485 ntBASIC3.79□□□□□ -1.8
CTCFP49711 AC013401.1-202ENST00000422017 626 ntTSL 2 BASIC3.79□□□□□ -1.8
CTCFP49711 MTCO1P39-201ENST00000426148 480 ntBASIC3.79□□□□□ -1.8
CTCFP49711 AC129850.1-201ENST00000436203 508 ntBASIC3.79□□□□□ -1.8
CTCFP49711 THAP5P1-201ENST00000439089 262 ntBASIC3.79□□□□□ -1.8
CTCFP49711 WASF1P1-201ENST00000447560 1131 ntBASIC3.79□□□□□ -1.8
CTCFP49711 MRPS31P2-201ENST00000451581 518 ntBASIC3.79□□□□□ -1.8
CTCFP49711 AC092162.2-204ENST00000451851 566 ntTSL 4 BASIC3.79□□□□□ -1.8
CTCFP49711 MTCO1P42-201ENST00000457379 726 ntBASIC3.79□□□□□ -1.8
CTCFP49711 AC092754.2-201ENST00000463506 460 ntBASIC3.79□□□□□ -1.8
CTCFP49711 AC108752.1-201ENST00000484679 576 ntTSL 5 BASIC3.79□□□□□ -1.8
CTCFP49711 ATP6V1G3-204ENST00000489986 449 ntTSL 1 (best) BASIC3.79□□□□□ -1.8
CTCFP49711 AC117522.2-201ENST00000510049 657 ntBASIC3.79□□□□□ -1.8
CTCFP49711 AC091906.1-201ENST00000511310 391 ntTSL 2 BASIC3.79□□□□□ -1.8
CTCFP49711 AC108517.1-201ENST00000512546 327 ntTSL 3 BASIC3.79□□□□□ -1.8
CTCFP49711 AC116347.2-201ENST00000514912 523 ntBASIC3.79□□□□□ -1.8
CTCFP49711 SNORA31.8-201ENST00000516327 108 ntBASIC3.79□□□□□ -1.8
CTCFP49711 RN7SKP60-201ENST00000516985 239 ntBASIC3.79□□□□□ -1.8
CTCFP49711 RGS5-206ENST00000527988 373 ntTSL 1 (best) BASIC3.79□□□□□ -1.8
CTCFP49711 AP002770.2-201ENST00000543613 532 ntBASIC3.79□□□□□ -1.8
CTCFP49711 AL845331.3-202ENST00000562856 261 ntBASIC3.79□□□□□ -1.8
CTCFP49711 PIGPP4-201ENST00000584447 307 ntBASIC3.79□□□□□ -1.8
CTCFP49711 AC012065.4-201ENST00000602445 679 ntBASIC3.79□□□□□ -1.8
CTCFP49711 AC012360.2-201ENST00000609349 391 ntBASIC3.79□□□□□ -1.8
CTCFP49711 AL390240.1-201ENST00000612950 384 ntBASIC3.79□□□□□ -1.8
CTCFP49711 AL591441.2-201ENST00000620059 535 ntTSL 5 BASIC3.79□□□□□ -1.8
CTCFP49711 AC079597.1-201ENST00000624306 508 ntBASIC3.79□□□□□ -1.8
CTCFP49711 LINC01002-202ENST00000631412 459 ntTSL 5 BASIC3.79□□□□□ -1.8
CTCFP49711 AC093591.3-201ENST00000634516 308 ntBASIC3.79□□□□□ -1.8
CTCFP49711 HNRNPC-203ENST00000430246 4501 ntAPPRIS P2 TSL 1 (best) BASIC3.79□□□□□ -1.8
CTCFP49711 C1orf141-202ENST00000371006 2053 ntAPPRIS P3 TSL 2 BASIC3.79□□□□□ -1.8
CTCFP49711 PGGT1B-203ENST00000419445 9545 ntAPPRIS P1 TSL 1 (best) BASIC3.78□□□□□ -1.8
CTCFP49711 STEAP4-201ENST00000301959 2321 ntTSL 1 (best) BASIC3.78□□□□□ -1.8
CTCFP49711 AC090740.1-201ENST00000623193 2262 ntBASIC3.78□□□□□ -1.8
CTCFP49711 FNBP1L-203ENST00000370253 3889 ntAPPRIS ALT1 TSL 5 BASIC3.78□□□□□ -1.8
CTCFP49711 SNORA71.1-201ENST00000364523 117 ntBASIC3.78□□□□□ -1.8
CTCFP49711 ZNF705D-201ENST00000400078 925 ntAPPRIS P1 TSL 2 BASIC3.78□□□□□ -1.8
CTCFP49711 PSMA4-202ENST00000413382 1019 ntTSL 1 (best) BASIC3.78□□□□□ -1.8
CTCFP49711 OR4K11P-201ENST00000431829 904 ntBASIC3.78□□□□□ -1.8
CTCFP49711 HMGN2P20-201ENST00000437531 273 ntBASIC3.78□□□□□ -1.8
CTCFP49711 AP1S2P1-201ENST00000457344 379 ntBASIC3.78□□□□□ -1.8
CTCFP49711 GPX5-203ENST00000469384 428 ntTSL 1 (best) BASIC3.78□□□□□ -1.8
CTCFP49711 RN7SL594P-201ENST00000470590 287 ntBASIC3.78□□□□□ -1.8
CTCFP49711 AP000797.1-201ENST00000478870 387 ntBASIC3.78□□□□□ -1.8
CTCFP49711 AC008883.2-201ENST00000505796 414 ntTSL 3 BASIC3.78□□□□□ -1.8
CTCFP49711 KLHL2P1-201ENST00000508691 521 ntBASIC3.78□□□□□ -1.8
CTCFP49711 RN7SKP132-201ENST00000516001 208 ntBASIC3.78□□□□□ -1.8
CTCFP49711 RNU4ATAC15P-201ENST00000516415 126 ntBASIC3.78□□□□□ -1.8
CTCFP49711 RNU6-1003P-201ENST00000517099 105 ntBASIC3.78□□□□□ -1.8
CTCFP49711 AC025881.1-201ENST00000518851 512 ntBASIC3.78□□□□□ -1.8
CTCFP49711 AL160237.1-201ENST00000554526 572 ntTSL 4 BASIC3.78□□□□□ -1.8
CTCFP49711 AL391156.1-201ENST00000554965 554 ntBASIC3.78□□□□□ -1.8
CTCFP49711 MEG8-218ENST00000556720 456 ntTSL 3 BASIC3.78□□□□□ -1.8
CTCFP49711 AC046158.1-201ENST00000563408 719 ntTSL 3 BASIC3.78□□□□□ -1.8
CTCFP49711 AC012414.6-201ENST00000568241 401 ntBASIC3.78□□□□□ -1.8
CTCFP49711 MIR5697-201ENST00000578045 78 ntBASIC3.78□□□□□ -1.8
CTCFP49711 MIR4738-201ENST00000579134 87 ntBASIC3.78□□□□□ -1.8
CTCFP49711 MIR4474-201ENST00000579189 78 ntBASIC3.78□□□□□ -1.8
CTCFP49711 AC069114.1-201ENST00000580927 287 ntTSL 2 BASIC3.78□□□□□ -1.8
CTCFP49711 AC060771.1-201ENST00000582031 164 ntBASIC3.78□□□□□ -1.8
CTCFP49711 AC083760.1-201ENST00000589621 670 ntBASIC3.78□□□□□ -1.8
Retrieved 100 of 98,524 protein–RNA pairs in 101.7 ms