Protein–RNA interactions for Protein: P38398

BRCA1, Breast cancer type 1 susceptibility protein, humanhuman

Known RBP Predictions only

Length 1,863 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BRCA1P38398 AC104777.1-203ENST00000423428 554 ntTSL 3 BASIC2.48□□□□□ -2.01
BRCA1P38398 AC092047.1-201ENST00000424997 240 ntBASIC2.48□□□□□ -2.01
BRCA1P38398 LINC02532-205ENST00000430094 628 ntTSL 5 BASIC2.48□□□□□ -2.01
BRCA1P38398 ZRANB2-AS2-204ENST00000430605 213 ntTSL 2 BASIC2.48□□□□□ -2.01
BRCA1P38398 NDUFA5P4-201ENST00000436704 385 ntBASIC2.48□□□□□ -2.01
BRCA1P38398 AC002386.1-201ENST00000436714 398 ntTSL 2 BASIC2.48□□□□□ -2.01
BRCA1P38398 AL513422.1-201ENST00000449531 383 ntTSL 2 BASIC2.48□□□□□ -2.01
BRCA1P38398 LINC01326-201ENST00000495159 755 ntTSL 2 BASIC2.48□□□□□ -2.01
BRCA1P38398 RPS29P11-201ENST00000496507 171 ntBASIC2.48□□□□□ -2.01
BRCA1P38398 AC112695.1-201ENST00000504213 592 ntTSL 2 BASIC2.48□□□□□ -2.01
BRCA1P38398 SNORA31.15-201ENST00000516771 132 ntBASIC2.48□□□□□ -2.01
BRCA1P38398 AC025881.1-201ENST00000518851 512 ntBASIC2.48□□□□□ -2.01
BRCA1P38398 MTCO3P15-201ENST00000526563 574 ntBASIC2.48□□□□□ -2.01
BRCA1P38398 SULT1C2P1-202ENST00000562418 459 ntBASIC2.48□□□□□ -2.01
BRCA1P38398 MIR3683-201ENST00000580847 82 ntBASIC2.48□□□□□ -2.01
BRCA1P38398 AC004987.4-201ENST00000603383 338 ntBASIC2.48□□□□□ -2.01
BRCA1P38398 AC097504.2-201ENST00000608088 454 ntBASIC2.48□□□□□ -2.01
BRCA1P38398 RPL36A-210ENST00000614077 881 ntTSL 1 (best) BASIC2.48□□□□□ -2.01
BRCA1P38398 AC010297.1-201ENST00000623948 149 ntBASIC2.48□□□□□ -2.01
BRCA1P38398 AL050331.3-201ENST00000448740 2081 ntTSL 2 BASIC2.48□□□□□ -2.01
BRCA1P38398 GABRG2-208ENST00000638552 3710 ntTSL 5 BASIC2.48□□□□□ -2.01
BRCA1P38398 ZNF404-201ENST00000324394 1844 ntAPPRIS ALT2 TSL 1 (best) BASIC2.48□□□□□ -2.01
BRCA1P38398 MGAT4C-210ENST00000620241 3194 ntAPPRIS P1 TSL 2 BASIC2.48□□□□□ -2.01
BRCA1P38398 AC008568.2-201ENST00000623862 2313 ntBASIC2.48□□□□□ -2.01
BRCA1P38398 SNRPEP3-201ENST00000338402 276 ntBASIC2.48□□□□□ -2.01
BRCA1P38398 DEFB108F-201ENST00000344638 222 ntBASIC2.48□□□□□ -2.01
BRCA1P38398 RNU6-236P-201ENST00000363886 106 ntBASIC2.48□□□□□ -2.01
BRCA1P38398 AF212831.1-201ENST00000430064 377 ntTSL 3 BASIC2.48□□□□□ -2.01
BRCA1P38398 LINC01650-201ENST00000438093 602 ntTSL 2 BASIC2.48□□□□□ -2.01
BRCA1P38398 LINC02118-201ENST00000505899 407 ntTSL 3 BASIC2.48□□□□□ -2.01
BRCA1P38398 SNORD59.2-201ENST00000516873 68 ntBASIC2.48□□□□□ -2.01
BRCA1P38398 snoZ278.1-201ENST00000517059 112 ntBASIC2.48□□□□□ -2.01
BRCA1P38398 AC022390.1-201ENST00000517854 434 ntTSL 3 BASIC2.48□□□□□ -2.01
BRCA1P38398 AC011586.1-201ENST00000521055 458 ntTSL 3 BASIC2.48□□□□□ -2.01
BRCA1P38398 DEFB108D-201ENST00000527787 222 ntBASIC2.48□□□□□ -2.01
BRCA1P38398 AL352955.1-201ENST00000555490 332 ntTSL 3 BASIC2.48□□□□□ -2.01
BRCA1P38398 AC037487.2-201ENST00000581796 537 ntTSL 3 BASIC2.48□□□□□ -2.01
BRCA1P38398 AL133393.1-201ENST00000603277 287 ntBASIC2.48□□□□□ -2.01
BRCA1P38398 AL356280.1-201ENST00000603614 379 ntBASIC2.48□□□□□ -2.01
BRCA1P38398 AC002487.1-201ENST00000604565 994 ntBASIC2.48□□□□□ -2.01
BRCA1P38398 AC090948.3-201ENST00000606713 551 ntTSL 4 BASIC2.48□□□□□ -2.01
BRCA1P38398 AL589994.2-201ENST00000621124 579 ntBASIC2.48□□□□□ -2.01
BRCA1P38398 AC006249.1-201ENST00000621223 471 ntBASIC2.48□□□□□ -2.01
BRCA1P38398 TRIQK-204ENST00000517858 1882 ntTSL 3 BASIC2.47□□□□□ -2.01
BRCA1P38398 ZBED5-201ENST00000413761 2512 ntAPPRIS P1 TSL 1 (best) BASIC2.47□□□□□ -2.01
BRCA1P38398 AP002907.1-201ENST00000606361 1430 ntBASIC2.47□□□□□ -2.01
BRCA1P38398 OR6C75-201ENST00000343399 939 ntAPPRIS P1 BASIC2.47□□□□□ -2.01
BRCA1P38398 U3.29-201ENST00000391296 212 ntBASIC2.47□□□□□ -2.01
BRCA1P38398 AC019330.1-202ENST00000440609 504 ntTSL 4 BASIC2.47□□□□□ -2.01
BRCA1P38398 RFC5P1-201ENST00000454419 874 ntBASIC2.47□□□□□ -2.01
BRCA1P38398 AC121764.2-201ENST00000469806 587 ntTSL 2 BASIC2.47□□□□□ -2.01
BRCA1P38398 HMGN2P13-201ENST00000476476 274 ntBASIC2.47□□□□□ -2.01
BRCA1P38398 PPP2R2B-IT1-201ENST00000505921 447 ntTSL 3 BASIC2.47□□□□□ -2.01
BRCA1P38398 RNU6-202P-201ENST00000515998 96 ntBASIC2.47□□□□□ -2.01
BRCA1P38398 SNORA70.16-201ENST00000516390 95 ntBASIC2.47□□□□□ -2.01
BRCA1P38398 TRIQK-209ENST00000519969 555 ntAPPRIS P1 TSL 4 BASIC2.47□□□□□ -2.01
BRCA1P38398 AC012413.1-201ENST00000521294 519 ntTSL 2 BASIC2.47□□□□□ -2.01
BRCA1P38398 AC087272.1-201ENST00000523624 533 ntBASIC2.47□□□□□ -2.01
BRCA1P38398 AL162311.1-201ENST00000553046 601 ntTSL 3 BASIC2.47□□□□□ -2.01
BRCA1P38398 DUXAP11-201ENST00000603858 526 ntBASIC2.47□□□□□ -2.01
BRCA1P38398 AC080013.4-201ENST00000607624 649 ntBASIC2.47□□□□□ -2.01
BRCA1P38398 PIK3CA-201ENST00000263967 9093 ntAPPRIS P1 TSL 2 BASIC2.47□□□□□ -2.01
BRCA1P38398 IL6ST-201ENST00000336909 8776 ntAPPRIS P1 TSL 2 BASIC2.46□□□□□ -2.02
BRCA1P38398 RNU6-989P-201ENST00000362756 107 ntBASIC2.46□□□□□ -2.02
BRCA1P38398 RNU6-792P-201ENST00000363490 107 ntBASIC2.46□□□□□ -2.02
BRCA1P38398 RNU6-374P-201ENST00000364146 108 ntBASIC2.46□□□□□ -2.02
BRCA1P38398 RNU1-138P-201ENST00000384093 164 ntBASIC2.46□□□□□ -2.02
BRCA1P38398 MIR499A-201ENST00000384903 122 ntBASIC2.46□□□□□ -2.02
BRCA1P38398 SNORA67.5-201ENST00000391036 107 ntBASIC2.46□□□□□ -2.02
BRCA1P38398 AL136133.1-201ENST00000413694 376 ntBASIC2.46□□□□□ -2.02
BRCA1P38398 AC093157.1-203ENST00000416329 713 ntTSL 5 BASIC2.46□□□□□ -2.02
BRCA1P38398 RPL23AP58-201ENST00000440453 469 ntBASIC2.46□□□□□ -2.02
BRCA1P38398 LINC01510-201ENST00000441991 468 ntTSL 3 BASIC2.46□□□□□ -2.02
BRCA1P38398 SETP11-201ENST00000473027 690 ntBASIC2.46□□□□□ -2.02
BRCA1P38398 LINC02447-203ENST00000504402 292 ntTSL 3 BASIC2.46□□□□□ -2.02
BRCA1P38398 AP003066.2-201ENST00000529375 555 ntBASIC2.46□□□□□ -2.02
BRCA1P38398 CD69-203ENST00000536709 1020 ntTSL 2 BASIC2.46□□□□□ -2.02
BRCA1P38398 AC008127.2-201ENST00000549925 1075 ntBASIC2.46□□□□□ -2.02
BRCA1P38398 AC010547.2-201ENST00000568523 409 ntTSL 5 BASIC2.46□□□□□ -2.02
BRCA1P38398 AC024257.5-201ENST00000612739 531 ntBASIC2.46□□□□□ -2.02
BRCA1P38398 NEAT1-205ENST00000616315 483 ntTSL 2 BASIC2.46□□□□□ -2.02
BRCA1P38398 OR1S1-201ENST00000624470 978 ntBASIC2.46□□□□□ -2.02
BRCA1P38398 AL109809.4-201ENST00000603520 2185 ntBASIC2.46□□□□□ -2.02
BRCA1P38398 LRRC70-201ENST00000334994 2249 ntAPPRIS P1 TSL 1 (best) BASIC2.46□□□□□ -2.02
BRCA1P38398 AL158064.1-201ENST00000627044 2242 ntTSL 4 BASIC2.45□□□□□ -2.02
BRCA1P38398 RNU6-207P-201ENST00000384137 107 ntBASIC2.45□□□□□ -2.02
BRCA1P38398 SETP8-201ENST00000435341 628 ntBASIC2.45□□□□□ -2.02
BRCA1P38398 LINC01986-201ENST00000440867 590 ntTSL 5 BASIC2.45□□□□□ -2.02
BRCA1P38398 AL357514.1-201ENST00000446322 488 ntTSL 3 BASIC2.45□□□□□ -2.02
BRCA1P38398 Z82190.1-201ENST00000454534 490 ntBASIC2.45□□□□□ -2.02
BRCA1P38398 RNU6-334P-201ENST00000517072 102 ntBASIC2.45□□□□□ -2.02
BRCA1P38398 LRRC6P1-201ENST00000532188 885 ntBASIC2.45□□□□□ -2.02
BRCA1P38398 AC004486.1-201ENST00000546846 233 ntBASIC2.45□□□□□ -2.02
BRCA1P38398 AC106796.1-201ENST00000577173 615 ntTSL 3 BASIC2.45□□□□□ -2.02
BRCA1P38398 AP000787.2-201ENST00000604432 568 ntBASIC2.45□□□□□ -2.02
BRCA1P38398 AP000238.1-201ENST00000608759 426 ntBASIC2.45□□□□□ -2.02
BRCA1P38398 AC004009.2-201ENST00000623016 728 ntBASIC2.45□□□□□ -2.02
BRCA1P38398 AC091925.2-201ENST00000625059 256 ntBASIC2.45□□□□□ -2.02
BRCA1P38398 HSFY2-201ENST00000304790 1444 ntAPPRIS P5 TSL 1 (best) BASIC2.45□□□□□ -2.02
BRCA1P38398 HSFY1-201ENST00000307393 1444 ntAPPRIS P5 TSL 1 (best) BASIC2.45□□□□□ -2.02
Retrieved 100 of 98,524 protein–RNA pairs in 108.5 ms