Protein–RNA interactions for Protein: P17096

HMGA1, High mobility group protein HMG-I/HMG-Y, humanhuman

Known RBP Predictions only

Length 107 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGA1P17096 SDR42E1P4-201ENST00000620894 481 ntBASIC1.29□□□□□ -2.2
HMGA1P17096 AC110079.1-202ENST00000635213 138 ntBASIC1.29□□□□□ -2.2
HMGA1P17096 AL807742.1-203ENST00000637444 759 ntTSL 5 BASIC1.29□□□□□ -2.2
HMGA1P17096 AGTR1-205ENST00000461609 1545 ntAPPRIS P1 TSL 3 BASIC1.29□□□□□ -2.2
HMGA1P17096 MTND5P35-201ENST00000557537 1720 ntBASIC1.29□□□□□ -2.2
HMGA1P17096 AL050331.3-201ENST00000448740 2081 ntTSL 2 BASIC1.28□□□□□ -2.2
HMGA1P17096 AC008781.2-201ENST00000502205 2480 ntTSL 1 (best) BASIC1.28□□□□□ -2.2
HMGA1P17096 GNPDA2-204ENST00000509756 5382 ntAPPRIS ALT1 TSL 1 (best) BASIC1.28□□□□□ -2.2
HMGA1P17096 SNORD23.1-201ENST00000408212 104 ntBASIC1.28□□□□□ -2.2
HMGA1P17096 KCNJ6-AS1-201ENST00000435001 357 ntTSL 5 BASIC1.28□□□□□ -2.2
HMGA1P17096 LINC00374-201ENST00000454780 800 ntTSL 3 BASIC1.28□□□□□ -2.2
HMGA1P17096 AC097493.1-201ENST00000463958 372 ntBASIC1.28□□□□□ -2.2
HMGA1P17096 AC093801.2-201ENST00000503966 1050 ntBASIC1.28□□□□□ -2.2
HMGA1P17096 OR5BM1P-201ENST00000512021 366 ntBASIC1.28□□□□□ -2.2
HMGA1P17096 AL160191.1-202ENST00000554008 576 ntTSL 4 BASIC1.28□□□□□ -2.2
HMGA1P17096 LINC02210-208ENST00000585118 546 ntTSL 1 (best) BASIC1.28□□□□□ -2.2
HMGA1P17096 UBE2L4-201ENST00000587688 464 ntBASIC1.28□□□□□ -2.2
HMGA1P17096 MIR6504-201ENST00000613520 61 ntBASIC1.28□□□□□ -2.2
HMGA1P17096 MIR6076-201ENST00000617521 113 ntBASIC1.28□□□□□ -2.2
HMGA1P17096 AL162373.1-201ENST00000620433 407 ntBASIC1.28□□□□□ -2.2
HMGA1P17096 AC020923.1-201ENST00000624021 917 ntBASIC1.28□□□□□ -2.2
HMGA1P17096 SATB1-AS1-258ENST00000629405 664 ntTSL 5 BASIC1.28□□□□□ -2.2
HMGA1P17096 SPAM1-206ENST00000460182 2154 ntAPPRIS ALT2 TSL 1 (best) BASIC1.28□□□□□ -2.2
HMGA1P17096 MRPL42-202ENST00000393128 1983 ntAPPRIS ALT1 TSL 3 BASIC1.27□□□□□ -2.21
HMGA1P17096 RNU6-629P-201ENST00000384061 103 ntBASIC1.27□□□□□ -2.21
HMGA1P17096 RPS12P24-201ENST00000412619 387 ntBASIC1.27□□□□□ -2.21
HMGA1P17096 PGBD4P6-201ENST00000421501 610 ntBASIC1.27□□□□□ -2.21
HMGA1P17096 TRIM60P3Y-201ENST00000432201 673 ntBASIC1.27□□□□□ -2.21
HMGA1P17096 FO393415.2-201ENST00000480085 343 ntBASIC1.27□□□□□ -2.21
HMGA1P17096 EIF4EP3-201ENST00000498782 656 ntBASIC1.27□□□□□ -2.21
HMGA1P17096 CA1-215ENST00000522389 551 ntTSL 3 BASIC1.27□□□□□ -2.21
HMGA1P17096 AC087463.2-201ENST00000565943 472 ntTSL 3 BASIC1.27□□□□□ -2.21
HMGA1P17096 AC015813.2-201ENST00000578794 711 ntAPPRIS P1 TSL 3 BASIC1.27□□□□□ -2.21
HMGA1P17096 AC024619.4-201ENST00000580924 316 ntBASIC1.27□□□□□ -2.21
HMGA1P17096 AC104984.2-201ENST00000582938 385 ntTSL 3 BASIC1.27□□□□□ -2.21
HMGA1P17096 KC877982.1-201ENST00000602313 470 ntBASIC1.27□□□□□ -2.21
HMGA1P17096 AC107214.2-201ENST00000608204 634 ntBASIC1.27□□□□□ -2.21
HMGA1P17096 OR10AB1P-201ENST00000609613 938 ntBASIC1.27□□□□□ -2.21
HMGA1P17096 MIR7974-201ENST00000615835 79 ntBASIC1.27□□□□□ -2.21
HMGA1P17096 FANCD2-213ENST00000625535 117 ntTSL 5 BASIC1.27□□□□□ -2.21
HMGA1P17096 AC004520.1-201ENST00000608362 1413 ntBASIC1.26□□□□□ -2.21
HMGA1P17096 HFM1-201ENST00000370425 4931 ntAPPRIS P1 TSL 1 (best) BASIC1.26□□□□□ -2.21
HMGA1P17096 AC068050.1-201ENST00000394891 380 ntBASIC1.26□□□□□ -2.21
HMGA1P17096 RPL31P63-201ENST00000422565 375 ntBASIC1.26□□□□□ -2.21
HMGA1P17096 FO393414.1-201ENST00000428697 1184 ntBASIC1.26□□□□□ -2.21
HMGA1P17096 AL589935.1-209ENST00000432050 418 ntTSL 5 BASIC1.26□□□□□ -2.21
HMGA1P17096 AL445687.1-201ENST00000439946 251 ntBASIC1.26□□□□□ -2.21
HMGA1P17096 HMGN2P18-201ENST00000450680 270 ntBASIC1.26□□□□□ -2.21
HMGA1P17096 AC092155.2-201ENST00000454675 477 ntBASIC1.26□□□□□ -2.21
HMGA1P17096 RNU1-98P-201ENST00000458992 160 ntBASIC1.26□□□□□ -2.21
HMGA1P17096 RPL30P14-201ENST00000482744 348 ntBASIC1.26□□□□□ -2.21
HMGA1P17096 AC093852.1-201ENST00000503587 266 ntBASIC1.26□□□□□ -2.21
HMGA1P17096 GYPA-203ENST00000503627 318 ntTSL 1 (best) BASIC1.26□□□□□ -2.21
HMGA1P17096 AC105343.1-201ENST00000505586 358 ntTSL 3 BASIC1.26□□□□□ -2.21
HMGA1P17096 AC107398.2-201ENST00000508081 601 ntTSL 5 BASIC1.26□□□□□ -2.21
HMGA1P17096 AC087241.1-201ENST00000508615 429 ntTSL 5 BASIC1.26□□□□□ -2.21
HMGA1P17096 AC021736.1-201ENST00000521143 563 ntTSL 4 BASIC1.26□□□□□ -2.21
HMGA1P17096 AP004371.1-201ENST00000525240 214 ntBASIC1.26□□□□□ -2.21
HMGA1P17096 LINC00944-203ENST00000542248 548 ntTSL 4 BASIC1.26□□□□□ -2.21
HMGA1P17096 TRAV28-201ENST00000557548 323 ntBASIC1.26□□□□□ -2.21
HMGA1P17096 AC002558.3-201ENST00000574021 401 ntTSL 3 BASIC1.26□□□□□ -2.21
HMGA1P17096 AL096840.1-201ENST00000603287 93 ntBASIC1.26□□□□□ -2.21
HMGA1P17096 BNIP3P4-201ENST00000604946 565 ntBASIC1.26□□□□□ -2.21
HMGA1P17096 BNIP3P7-201ENST00000605641 516 ntBASIC1.26□□□□□ -2.21
HMGA1P17096 AC011472.4-201ENST00000615848 491 ntBASIC1.26□□□□□ -2.21
HMGA1P17096 AL138880.2-201ENST00000616214 239 ntBASIC1.26□□□□□ -2.21
HMGA1P17096 AC006338.1-201ENST00000618453 749 ntBASIC1.26□□□□□ -2.21
HMGA1P17096 CCDC148-202ENST00000409187 2523 ntAPPRIS P1 TSL 5 BASIC1.25□□□□□ -2.21
HMGA1P17096 MIR96-201ENST00000362288 78 ntBASIC1.25□□□□□ -2.21
HMGA1P17096 TRGV11-201ENST00000390340 463 ntAPPRIS P1 BASIC1.25□□□□□ -2.21
HMGA1P17096 SLC9B1P2-201ENST00000398120 1184 ntBASIC1.25□□□□□ -2.21
HMGA1P17096 RPL7P27-201ENST00000403775 720 ntBASIC1.25□□□□□ -2.21
HMGA1P17096 AL365400.1-201ENST00000431854 640 ntBASIC1.25□□□□□ -2.21
HMGA1P17096 RPL35AP22-201ENST00000436855 335 ntBASIC1.25□□□□□ -2.21
HMGA1P17096 DNAJC19P4-201ENST00000440115 345 ntBASIC1.25□□□□□ -2.21
HMGA1P17096 LINC02195-201ENST00000443373 294 ntTSL 3 BASIC1.25□□□□□ -2.21
HMGA1P17096 MYCBP2-AS1-203ENST00000450627 349 ntTSL 3 BASIC1.25□□□□□ -2.21
HMGA1P17096 AP000431.2-201ENST00000450653 790 ntTSL 2 BASIC1.25□□□□□ -2.21
HMGA1P17096 RNA5SP310-201ENST00000459084 116 ntBASIC1.25□□□□□ -2.21
HMGA1P17096 AC080013.2-201ENST00000460866 323 ntBASIC1.25□□□□□ -2.21
HMGA1P17096 AC104685.1-201ENST00000502445 371 ntBASIC1.25□□□□□ -2.21
HMGA1P17096 AC105252.1-201ENST00000503089 286 ntBASIC1.25□□□□□ -2.21
HMGA1P17096 AC025580.2-205ENST00000559960 552 ntTSL 4 BASIC1.25□□□□□ -2.21
HMGA1P17096 AL031716.1-201ENST00000569106 530 ntTSL 5 BASIC1.25□□□□□ -2.21
HMGA1P17096 AC005332.10-201ENST00000612725 619 ntBASIC1.25□□□□□ -2.21
HMGA1P17096 ZFAT-AS1_2.1-201ENST00000613742 201 ntBASIC1.25□□□□□ -2.21
HMGA1P17096 ST7-OT4_2.1-201ENST00000619089 172 ntBASIC1.25□□□□□ -2.21
HMGA1P17096 OR8K3-202ENST00000623845 939 ntAPPRIS P1 BASIC1.25□□□□□ -2.21
HMGA1P17096 AL133216.2-202ENST00000634512 349 ntBASIC1.25□□□□□ -2.21
HMGA1P17096 LINC01359-207ENST00000634799 487 ntTSL 5 BASIC1.25□□□□□ -2.21
HMGA1P17096 OR4C15-202ENST00000642128 951 ntAPPRIS P1 BASIC1.25□□□□□ -2.21
HMGA1P17096 ZFAND6-212ENST00000559775 1602 ntAPPRIS P1 TSL 2 BASIC1.25□□□□□ -2.21
HMGA1P17096 AC068700.1-201ENST00000565862 3754 ntBASIC1.25□□□□□ -2.21
HMGA1P17096 OR5T1-202ENST00000641665 1471 ntAPPRIS P1 BASIC1.24□□□□□ -2.21
HMGA1P17096 SNORD56-201ENST00000413522 71 ntBASIC1.24□□□□□ -2.21
HMGA1P17096 AL136133.1-201ENST00000413694 376 ntBASIC1.24□□□□□ -2.21
HMGA1P17096 AC074117.2-201ENST00000417130 397 ntBASIC1.24□□□□□ -2.21
HMGA1P17096 AC244033.1-201ENST00000426826 870 ntBASIC1.24□□□□□ -2.21
HMGA1P17096 AC015922.2-201ENST00000435593 184 ntBASIC1.24□□□□□ -2.21
HMGA1P17096 OSTCP8-201ENST00000445117 448 ntBASIC1.24□□□□□ -2.21
Retrieved 100 of 98,524 protein–RNA pairs in 115.3 ms