Protein–RNA interactions for Protein: Q9UKF6

CPSF3, Cleavage and polyadenylation specificity factor subunit 3, humanhuman

Known RBP Predictions only

Length 684 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF3Q9UKF6 AKIRIN1P1-201ENST00000547384 544 ntBASIC3.34□□□□□ -1.87
CPSF3Q9UKF6 MEG8-218ENST00000556720 456 ntTSL 3 BASIC3.34□□□□□ -1.87
CPSF3Q9UKF6 AC092718.6-202ENST00000563072 408 ntTSL 2 BASIC3.34□□□□□ -1.87
CPSF3Q9UKF6 LINC02164-201ENST00000566684 272 ntTSL 3 BASIC3.34□□□□□ -1.87
CPSF3Q9UKF6 AC109446.2-201ENST00000567872 497 ntBASIC3.34□□□□□ -1.87
CPSF3Q9UKF6 AC009271.1-202ENST00000588803 492 ntTSL 3 BASIC3.34□□□□□ -1.87
CPSF3Q9UKF6 AC012409.2-201ENST00000619812 751 ntTSL 5 BASIC3.34□□□□□ -1.87
CPSF3Q9UKF6 AL591441.2-201ENST00000620059 535 ntTSL 5 BASIC3.34□□□□□ -1.87
CPSF3Q9UKF6 AC012150.2-201ENST00000621300 544 ntBASIC3.34□□□□□ -1.87
CPSF3Q9UKF6 AC008443.7-201ENST00000622195 246 ntBASIC3.34□□□□□ -1.87
CPSF3Q9UKF6 AC091953.5-201ENST00000622919 233 ntBASIC3.34□□□□□ -1.87
CPSF3Q9UKF6 GABRG2-229ENST00000641017 3628 ntBASIC3.34□□□□□ -1.88
CPSF3Q9UKF6 ZNF883-201ENST00000619044 2051 ntAPPRIS P1 TSL 5 BASIC3.34□□□□□ -1.88
CPSF3Q9UKF6 AL355596.1-201ENST00000565399 3996 ntBASIC3.34□□□□□ -1.88
CPSF3Q9UKF6 MTND5P27-201ENST00000428871 1720 ntBASIC3.33□□□□□ -1.88
CPSF3Q9UKF6 TRIQK-212ENST00000520686 1808 ntAPPRIS P1 TSL 1 (best) BASIC3.33□□□□□ -1.88
CPSF3Q9UKF6 AC011460.1-201ENST00000636268 1834 ntBASIC3.33□□□□□ -1.88
CPSF3Q9UKF6 ROS1-202ENST00000368508 7435 ntAPPRIS P2 TSL 1 (best) BASIC3.33□□□□□ -1.88
CPSF3Q9UKF6 AC073325.2-201ENST00000339545 159 ntBASIC3.33□□□□□ -1.88
CPSF3Q9UKF6 MIR422A-201ENST00000362286 90 ntBASIC3.33□□□□□ -1.88
CPSF3Q9UKF6 RNA5SP383-201ENST00000362934 120 ntBASIC3.33□□□□□ -1.88
CPSF3Q9UKF6 RNU6-501P-201ENST00000364072 100 ntBASIC3.33□□□□□ -1.88
CPSF3Q9UKF6 U3.11-201ENST00000364476 212 ntBASIC3.33□□□□□ -1.88
CPSF3Q9UKF6 SAR1AP2-201ENST00000392696 594 ntBASIC3.33□□□□□ -1.88
CPSF3Q9UKF6 MIR1290-201ENST00000408735 78 ntBASIC3.33□□□□□ -1.88
CPSF3Q9UKF6 ERMN-204ENST00000409925 556 ntTSL 4 BASIC3.33□□□□□ -1.88
CPSF3Q9UKF6 RNA5SP293-201ENST00000410527 113 ntBASIC3.33□□□□□ -1.88
CPSF3Q9UKF6 AC010731.3-201ENST00000415029 566 ntTSL 4 BASIC3.33□□□□□ -1.88
CPSF3Q9UKF6 AL513365.2-201ENST00000423060 529 ntTSL 2 BASIC3.33□□□□□ -1.88
CPSF3Q9UKF6 PPP1R11P2-201ENST00000423543 382 ntBASIC3.33□□□□□ -1.88
CPSF3Q9UKF6 AL356361.2-201ENST00000430542 443 ntTSL 3 BASIC3.33□□□□□ -1.88
CPSF3Q9UKF6 AL365184.2-201ENST00000431139 435 ntBASIC3.33□□□□□ -1.88
CPSF3Q9UKF6 UBE2V1P13-201ENST00000436983 439 ntBASIC3.33□□□□□ -1.88
CPSF3Q9UKF6 AL512286.1-201ENST00000439244 400 ntBASIC3.33□□□□□ -1.88
CPSF3Q9UKF6 CYCSP32-201ENST00000440548 321 ntBASIC3.33□□□□□ -1.88
CPSF3Q9UKF6 AL360091.3-201ENST00000442146 387 ntTSL 5 BASIC3.33□□□□□ -1.88
CPSF3Q9UKF6 AC095032.1-201ENST00000444810 527 ntTSL 3 BASIC3.33□□□□□ -1.88
CPSF3Q9UKF6 EPS15P1-201ENST00000448836 336 ntBASIC3.33□□□□□ -1.88
CPSF3Q9UKF6 MTND1P9-201ENST00000453775 944 ntBASIC3.33□□□□□ -1.88
CPSF3Q9UKF6 UBA6-AS1-204ENST00000502758 547 ntTSL 4 BASIC3.33□□□□□ -1.88
CPSF3Q9UKF6 RPF2P2-201ENST00000504693 896 ntBASIC3.33□□□□□ -1.88
CPSF3Q9UKF6 VN1R104P-201ENST00000505115 1009 ntBASIC3.33□□□□□ -1.88
CPSF3Q9UKF6 MTND4LP22-201ENST00000508209 276 ntBASIC3.33□□□□□ -1.88
CPSF3Q9UKF6 AC034234.1-202ENST00000508696 339 ntTSL 3 BASIC3.33□□□□□ -1.88
CPSF3Q9UKF6 RNA5SP380-201ENST00000517190 98 ntBASIC3.33□□□□□ -1.88
CPSF3Q9UKF6 AL138812.1-201ENST00000525573 471 ntTSL 3 BASIC3.33□□□□□ -1.88
CPSF3Q9UKF6 AC104237.1-201ENST00000527443 539 ntTSL 4 BASIC3.33□□□□□ -1.88
CPSF3Q9UKF6 AP001318.2-201ENST00000533378 492 ntTSL 3 BASIC3.33□□□□□ -1.88
CPSF3Q9UKF6 MAL2-203ENST00000534619 578 ntTSL 4 BASIC3.33□□□□□ -1.88
CPSF3Q9UKF6 TIMM9-207ENST00000555930 448 ntTSL 3 BASIC3.33□□□□□ -1.88
CPSF3Q9UKF6 LINC02311-202ENST00000556819 477 ntTSL 3 BASIC3.33□□□□□ -1.88
CPSF3Q9UKF6 AC215217.1-201ENST00000562162 347 ntTSL 3 BASIC3.33□□□□□ -1.88
CPSF3Q9UKF6 MIR3915-201ENST00000578518 97 ntBASIC3.33□□□□□ -1.88
CPSF3Q9UKF6 CLIC4P2-201ENST00000601934 717 ntBASIC3.33□□□□□ -1.88
CPSF3Q9UKF6 AL109811.3-202ENST00000612387 651 ntTSL 3 BASIC3.33□□□□□ -1.88
CPSF3Q9UKF6 AC068631.1-219ENST00000625826 668 ntTSL 5 BASIC3.33□□□□□ -1.88
CPSF3Q9UKF6 PABPC1P9-201ENST00000426076 1612 ntBASIC3.33□□□□□ -1.88
CPSF3Q9UKF6 KTN1-206ENST00000413890 4473 ntAPPRIS ALT2 TSL 5 BASIC3.32□□□□□ -1.88
CPSF3Q9UKF6 AC092125.1-201ENST00000562568 1995 ntBASIC3.32□□□□□ -1.88
CPSF3Q9UKF6 TAB3-203ENST00000378930 6255 ntAPPRIS P1 TSL 1 (best) BASIC3.32□□□□□ -1.88
CPSF3Q9UKF6 MIR22-201ENST00000362190 85 ntBASIC3.32□□□□□ -1.88
CPSF3Q9UKF6 RNU6-805P-201ENST00000365643 106 ntBASIC3.32□□□□□ -1.88
CPSF3Q9UKF6 PTPRC-202ENST00000367364 1017 ntTSL 1 (best) BASIC3.32□□□□□ -1.88
CPSF3Q9UKF6 RNU6-637P-201ENST00000384050 107 ntBASIC3.32□□□□□ -1.88
CPSF3Q9UKF6 RNU6-76P-201ENST00000384060 104 ntBASIC3.32□□□□□ -1.88
CPSF3Q9UKF6 SNORA48.2-201ENST00000390926 124 ntBASIC3.32□□□□□ -1.88
CPSF3Q9UKF6 SNORA48.5-201ENST00000391143 135 ntBASIC3.32□□□□□ -1.88
CPSF3Q9UKF6 RPL32P35-201ENST00000415214 394 ntBASIC3.32□□□□□ -1.88
CPSF3Q9UKF6 EDNRB-AS1-201ENST00000422405 601 ntTSL 5 BASIC3.32□□□□□ -1.88
CPSF3Q9UKF6 AC006041.1-201ENST00000425322 328 ntTSL 3 BASIC3.32□□□□□ -1.88
CPSF3Q9UKF6 AL596220.1-202ENST00000429768 314 ntTSL 3 BASIC3.32□□□□□ -1.88
CPSF3Q9UKF6 LINC00189-202ENST00000431661 308 ntTSL 5 BASIC3.32□□□□□ -1.88
CPSF3Q9UKF6 AC109583.1-201ENST00000432156 268 ntBASIC3.32□□□□□ -1.88
CPSF3Q9UKF6 AL355340.1-201ENST00000433085 344 ntTSL 3 BASIC3.32□□□□□ -1.88
CPSF3Q9UKF6 NDUFB4P6-201ENST00000436819 366 ntBASIC3.32□□□□□ -1.88
CPSF3Q9UKF6 TPT1P14-201ENST00000448018 505 ntBASIC3.32□□□□□ -1.88
CPSF3Q9UKF6 CHRM3-AS2-203ENST00000458325 895 ntTSL 2 BASIC3.32□□□□□ -1.88
CPSF3Q9UKF6 S100A11P2-201ENST00000467589 312 ntBASIC3.32□□□□□ -1.88
CPSF3Q9UKF6 AC006483.1-201ENST00000487308 313 ntBASIC3.32□□□□□ -1.88
CPSF3Q9UKF6 CSN1S1-202ENST00000505782 871 ntAPPRIS ALT2 TSL 5 BASIC3.32□□□□□ -1.88
CPSF3Q9UKF6 CSN1S1-204ENST00000507772 895 ntAPPRIS ALT2 TSL 5 BASIC3.32□□□□□ -1.88
CPSF3Q9UKF6 AC119751.5-201ENST00000514077 770 ntBASIC3.32□□□□□ -1.88
CPSF3Q9UKF6 RNA5SP341-201ENST00000516261 117 ntBASIC3.32□□□□□ -1.88
CPSF3Q9UKF6 RNU6-798P-201ENST00000516912 103 ntBASIC3.32□□□□□ -1.88
CPSF3Q9UKF6 AC087373.1-201ENST00000524920 491 ntBASIC3.32□□□□□ -1.88
CPSF3Q9UKF6 AL133271.1-201ENST00000538229 291 ntBASIC3.32□□□□□ -1.88
CPSF3Q9UKF6 AC018410.2-201ENST00000540410 610 ntTSL 5 BASIC3.32□□□□□ -1.88
CPSF3Q9UKF6 LINC02410-201ENST00000553095 393 ntTSL 2 BASIC3.32□□□□□ -1.88
CPSF3Q9UKF6 OR4T1P-201ENST00000554933 911 ntBASIC3.32□□□□□ -1.88
CPSF3Q9UKF6 PCMTD1P2-201ENST00000565017 355 ntBASIC3.32□□□□□ -1.88
CPSF3Q9UKF6 AC091489.2-201ENST00000566263 604 ntBASIC3.32□□□□□ -1.88
CPSF3Q9UKF6 AC024270.4-201ENST00000570202 421 ntTSL 3 BASIC3.32□□□□□ -1.88
CPSF3Q9UKF6 AC091691.2-201ENST00000581940 567 ntTSL 4 BASIC3.32□□□□□ -1.88
CPSF3Q9UKF6 AL133393.1-201ENST00000603277 287 ntBASIC3.32□□□□□ -1.88
CPSF3Q9UKF6 AC004067.1-201ENST00000608733 700 ntBASIC3.32□□□□□ -1.88
CPSF3Q9UKF6 AC007494.3-201ENST00000624660 743 ntBASIC3.32□□□□□ -1.88
CPSF3Q9UKF6 AC091965.5-201ENST00000624785 342 ntBASIC3.32□□□□□ -1.88
CPSF3Q9UKF6 AL353743.1-202ENST00000431724 1695 ntBASIC3.32□□□□□ -1.88
CPSF3Q9UKF6 ASPN-201ENST00000375543 2237 ntTSL 2 BASIC3.32□□□□□ -1.88
CPSF3Q9UKF6 HDX-201ENST00000297977 6200 ntAPPRIS P1 TSL 1 (best) BASIC3.31□□□□□ -1.88
Retrieved 100 of 98,524 protein–RNA pairs in 262.9 ms