Protein–RNA interactions for Protein: Q9NVE4

CCDC87, Coiled-coil domain-containing protein 87, humanhuman

Predictions only

Length 849 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC87Q9NVE4 RNA5SP519-201ENST00000516480 119 ntBASIC5.56□□□□□ -1.52
CCDC87Q9NVE4 AC023824.4-201ENST00000562572 476 ntTSL 3 BASIC5.56□□□□□ -1.52
CCDC87Q9NVE4 MIR3941-201ENST00000582572 103 ntBASIC5.56□□□□□ -1.52
CCDC87Q9NVE4 AC011524.1-201ENST00000590167 240 ntTSL 3 BASIC5.56□□□□□ -1.52
CCDC87Q9NVE4 RPL7P50-201ENST00000600588 727 ntBASIC5.56□□□□□ -1.52
CCDC87Q9NVE4 AC009570.1-201ENST00000609599 745 ntBASIC5.56□□□□□ -1.52
CCDC87Q9NVE4 U2.17-201ENST00000611454 95 ntBASIC5.56□□□□□ -1.52
CCDC87Q9NVE4 AC012409.4-201ENST00000612923 249 ntBASIC5.56□□□□□ -1.52
CCDC87Q9NVE4 AL157817.1-201ENST00000614264 790 ntBASIC5.56□□□□□ -1.52
CCDC87Q9NVE4 AC015914.2-201ENST00000618167 288 ntBASIC5.56□□□□□ -1.52
CCDC87Q9NVE4 MAGI2-AS3-224ENST00000619135 205 ntTSL 5 BASIC5.56□□□□□ -1.52
CCDC87Q9NVE4 AL589994.2-201ENST00000621124 579 ntBASIC5.56□□□□□ -1.52
CCDC87Q9NVE4 CAPZA2-215ENST00000639546 129 ntTSL 5 BASIC5.56□□□□□ -1.52
CCDC87Q9NVE4 CPNE8-202ENST00000360449 1757 ntAPPRIS ALT2 TSL 2 BASIC5.56□□□□□ -1.52
CCDC87Q9NVE4 SCN3A-202ENST00000360093 9123 ntAPPRIS ALT1 TSL 5 BASIC5.56□□□□□ -1.52
CCDC87Q9NVE4 SLC4A10-206ENST00000446997 5551 ntAPPRIS P4 TSL 1 (best) BASIC5.56□□□□□ -1.52
CCDC87Q9NVE4 PTPN13-209ENST00000511467 8076 ntAPPRIS P4 TSL 2 BASIC5.56□□□□□ -1.52
CCDC87Q9NVE4 DYTN-201ENST00000452335 2051 ntAPPRIS P1 TSL 1 (best) BASIC5.55□□□□□ -1.52
CCDC87Q9NVE4 GRAMD2B-210ENST00000511134 1577 ntTSL 2 BASIC5.55□□□□□ -1.52
CCDC87Q9NVE4 AC106871.1-201ENST00000568324 3102 ntBASIC5.55□□□□□ -1.52
CCDC87Q9NVE4 RAG2-209ENST00000618712 2818 ntAPPRIS P1 TSL 4 BASIC5.55□□□□□ -1.52
CCDC87Q9NVE4 Z95331.1-201ENST00000623075 23112 ntBASIC5.55□□□□□ -1.52
CCDC87Q9NVE4 ASB5-201ENST00000296525 3031 ntAPPRIS P1 TSL 1 (best) BASIC5.55□□□□□ -1.52
CCDC87Q9NVE4 MYBPC1-202ENST00000361685 3871 ntAPPRIS ALT2 TSL 1 (best) BASIC5.55□□□□□ -1.52
CCDC87Q9NVE4 DMXL2-203ENST00000543779 10400 ntAPPRIS ALT2 TSL 1 (best) BASIC5.55□□□□□ -1.52
CCDC87Q9NVE4 Y_RNA.28-201ENST00000362554 111 ntBASIC5.55□□□□□ -1.52
CCDC87Q9NVE4 RNU1-14P-201ENST00000362759 152 ntBASIC5.55□□□□□ -1.52
CCDC87Q9NVE4 Y_RNA.112-201ENST00000363250 102 ntBASIC5.55□□□□□ -1.52
CCDC87Q9NVE4 RNU6-525P-201ENST00000363685 104 ntBASIC5.55□□□□□ -1.52
CCDC87Q9NVE4 SNORA70E-201ENST00000384492 135 ntBASIC5.55□□□□□ -1.52
CCDC87Q9NVE4 RPS20P14-201ENST00000412545 360 ntBASIC5.55□□□□□ -1.52
CCDC87Q9NVE4 AL162411.1-201ENST00000413145 526 ntTSL 2 BASIC5.55□□□□□ -1.52
CCDC87Q9NVE4 AL138785.1-201ENST00000425821 331 ntBASIC5.55□□□□□ -1.52
CCDC87Q9NVE4 AC093106.2-201ENST00000428212 385 ntBASIC5.55□□□□□ -1.52
CCDC87Q9NVE4 AC244035.3-201ENST00000428399 271 ntTSL 2 BASIC5.55□□□□□ -1.52
CCDC87Q9NVE4 COX6B1P7-201ENST00000430845 235 ntBASIC5.55□□□□□ -1.52
CCDC87Q9NVE4 RPS29P7-201ENST00000439662 171 ntBASIC5.55□□□□□ -1.52
CCDC87Q9NVE4 AC010631.1-201ENST00000474150 156 ntBASIC5.55□□□□□ -1.52
CCDC87Q9NVE4 AC020890.1-201ENST00000491837 504 ntBASIC5.55□□□□□ -1.52
CCDC87Q9NVE4 AC109464.3-201ENST00000509456 204 ntTSL 5 BASIC5.55□□□□□ -1.52
CCDC87Q9NVE4 SMURF2P1-201ENST00000514992 481 ntBASIC5.55□□□□□ -1.52
CCDC87Q9NVE4 STX3-204ENST00000530221 534 ntTSL 5 BASIC5.55□□□□□ -1.52
CCDC87Q9NVE4 AC107918.3-201ENST00000533272 382 ntBASIC5.55□□□□□ -1.52
CCDC87Q9NVE4 LINC02442-201ENST00000537732 343 ntTSL 3 BASIC5.55□□□□□ -1.52
CCDC87Q9NVE4 AL355102.1-201ENST00000555383 460 ntTSL 5 BASIC5.55□□□□□ -1.52
CCDC87Q9NVE4 RN7SL703P-201ENST00000578485 302 ntBASIC5.55□□□□□ -1.52
CCDC87Q9NVE4 MIR3936-201ENST00000584304 110 ntBASIC5.55□□□□□ -1.52
CCDC87Q9NVE4 AF038458.1-201ENST00000588406 262 ntBASIC5.55□□□□□ -1.52
CCDC87Q9NVE4 AC106900.2-201ENST00000604994 317 ntBASIC5.55□□□□□ -1.52
CCDC87Q9NVE4 FAM27D1-201ENST00000612308 341 ntBASIC5.55□□□□□ -1.52
CCDC87Q9NVE4 AC098657.3-201ENST00000620434 263 ntBASIC5.55□□□□□ -1.52
CCDC87Q9NVE4 LGALS13-204ENST00000621475 494 ntAPPRIS ALT2 TSL 5 BASIC5.55□□□□□ -1.52
CCDC87Q9NVE4 AC243312.2-201ENST00000623340 601 ntBASIC5.55□□□□□ -1.52
CCDC87Q9NVE4 ORC3-201ENST00000257789 2501 ntAPPRIS P3 TSL 1 (best) BASIC5.55□□□□□ -1.52
CCDC87Q9NVE4 CAST-207ENST00000395813 4356 ntAPPRIS ALT2 TSL 5 BASIC5.55□□□□□ -1.52
CCDC87Q9NVE4 UGP2-229ENST00000613823 1858 ntAPPRIS ALT1 TSL 5 BASIC5.55□□□□□ -1.52
CCDC87Q9NVE4 IGSF11-AS1-201ENST00000477009 1604 ntTSL 2 BASIC5.55□□□□□ -1.52
CCDC87Q9NVE4 ZKSCAN8-201ENST00000330236 7376 ntAPPRIS P1 TSL 1 (best) BASIC5.55□□□□□ -1.52
CCDC87Q9NVE4 GHR-202ENST00000357703 4316 ntTSL 5 BASIC5.55□□□□□ -1.52
CCDC87Q9NVE4 GHR-213ENST00000622294 4312 ntTSL 5 BASIC5.55□□□□□ -1.52
CCDC87Q9NVE4 AP002512.4-201ENST00000641310 4672 ntAPPRIS P1 BASIC5.54□□□□□ -1.52
CCDC87Q9NVE4 PCDH15-211ENST00000395440 3177 ntTSL 5 BASIC5.54□□□□□ -1.52
CCDC87Q9NVE4 INTU-201ENST00000335251 13233 ntAPPRIS P1 TSL 1 (best) BASIC5.54□□□□□ -1.52
CCDC87Q9NVE4 ATRX-202ENST00000395603 10218 ntAPPRIS ALT2 TSL 1 (best) BASIC5.54□□□□□ -1.52
CCDC87Q9NVE4 OR4S2-202ENST00000641692 2211 ntAPPRIS P1 BASIC5.54□□□□□ -1.52
CCDC87Q9NVE4 BBX-204ENST00000406780 3674 ntAPPRIS P3 TSL 5 BASIC5.54□□□□□ -1.52
CCDC87Q9NVE4 Y_RNA.135-201ENST00000363439 95 ntBASIC5.54□□□□□ -1.52
CCDC87Q9NVE4 RNA5SP130-201ENST00000364431 114 ntBASIC5.54□□□□□ -1.52
CCDC87Q9NVE4 RNA5SP219-201ENST00000390940 113 ntBASIC5.54□□□□□ -1.52
CCDC87Q9NVE4 AC097374.1-203ENST00000400783 485 ntBASIC5.54□□□□□ -1.52
CCDC87Q9NVE4 MIR450B-201ENST00000401182 78 ntBASIC5.54□□□□□ -1.52
CCDC87Q9NVE4 PVALB-202ENST00000404171 422 ntTSL 2 BASIC5.54□□□□□ -1.52
CCDC87Q9NVE4 RNA5SP36-201ENST00000410197 133 ntBASIC5.54□□□□□ -1.52
CCDC87Q9NVE4 AC003092.1-201ENST00000415536 639 ntTSL 3 BASIC5.54□□□□□ -1.52
CCDC87Q9NVE4 CRYBB2P1-203ENST00000415709 538 ntBASIC5.54□□□□□ -1.52
CCDC87Q9NVE4 SKA2P1-201ENST00000425592 390 ntBASIC5.54□□□□□ -1.52
CCDC87Q9NVE4 KCNMA1-AS2-201ENST00000428936 427 ntTSL 3 BASIC5.54□□□□□ -1.52
CCDC87Q9NVE4 AL137792.2-201ENST00000443484 235 ntBASIC5.54□□□□□ -1.52
CCDC87Q9NVE4 AL162388.1-201ENST00000450912 352 ntBASIC5.54□□□□□ -1.52
CCDC87Q9NVE4 AC009468.2-201ENST00000457372 366 ntTSL 5 BASIC5.54□□□□□ -1.52
CCDC87Q9NVE4 RBBP4P6-201ENST00000508098 202 ntBASIC5.54□□□□□ -1.52
CCDC87Q9NVE4 LINC02103-201ENST00000512849 523 ntTSL 5 BASIC5.54□□□□□ -1.52
CCDC87Q9NVE4 RNU6-1095P-201ENST00000516148 108 ntBASIC5.54□□□□□ -1.52
CCDC87Q9NVE4 GYPA-211ENST00000535709 695 ntAPPRIS ALT2 TSL 1 (best) BASIC5.54□□□□□ -1.52
CCDC87Q9NVE4 THEMIS-204ENST00000537166 3830 ntAPPRIS ALT2 TSL 2 BASIC5.54□□□□□ -1.52
CCDC87Q9NVE4 AC096558.2-201ENST00000546678 506 ntTSL 3 BASIC5.54□□□□□ -1.52
CCDC87Q9NVE4 AL133371.2-201ENST00000556624 294 ntTSL 3 BASIC5.54□□□□□ -1.52
CCDC87Q9NVE4 AL352979.2-201ENST00000556988 366 ntTSL 3 BASIC5.54□□□□□ -1.52
CCDC87Q9NVE4 AC076968.1-201ENST00000566418 429 ntTSL 5 BASIC5.54□□□□□ -1.52
CCDC87Q9NVE4 AL589765.7-201ENST00000601684 629 ntTSL 3 BASIC5.54□□□□□ -1.52
CCDC87Q9NVE4 AL021997.2-201ENST00000615674 271 ntBASIC5.54□□□□□ -1.52
CCDC87Q9NVE4 AL122125.1-201ENST00000616999 600 ntBASIC5.54□□□□□ -1.52
CCDC87Q9NVE4 U73479.1-201ENST00000618062 168 ntBASIC5.54□□□□□ -1.52
CCDC87Q9NVE4 CFAP70-201ENST00000310715 3703 ntAPPRIS P1 TSL 5 BASIC5.54□□□□□ -1.52
CCDC87Q9NVE4 ARL15-202ENST00000504924 2486 ntAPPRIS P2 TSL 1 (best) BASIC5.54□□□□□ -1.52
CCDC87Q9NVE4 ARL15-207ENST00000620747 2486 ntAPPRIS ALT1 TSL 5 BASIC5.54□□□□□ -1.52
CCDC87Q9NVE4 PCDH11X-207ENST00000406881 4156 ntAPPRIS ALT2 TSL 1 (best) BASIC5.54□□□□□ -1.52
CCDC87Q9NVE4 THOC1-219ENST00000616322 2078 ntAPPRIS ALT1 TSL 5 BASIC5.54□□□□□ -1.52
CCDC87Q9NVE4 AC110597.3-202ENST00000583493 3289 ntTSL 5 BASIC5.54□□□□□ -1.52
CCDC87Q9NVE4 CCNT2-201ENST00000264157 6917 ntAPPRIS P1 TSL 1 (best) BASIC5.53□□□□□ -1.52
Retrieved 100 of 98,524 protein–RNA pairs in 86.2 ms