| ATP6AP1L | Q52LC2 | AC095056.1-201 | ENST00000503918 | 425 nt | TSL 3 BASIC | 2.16 | □□□□□ -2.06 | | |
| ATP6AP1L | Q52LC2 | AC010280.1-201 | ENST00000515199 | 340 nt | TSL 2 BASIC | 2.16 | □□□□□ -2.06 | | |
| ATP6AP1L | Q52LC2 | LINC02286-201 | ENST00000552425 | 285 nt | TSL 2 BASIC | 2.16 | □□□□□ -2.06 | | |
| ATP6AP1L | Q52LC2 | AC002115.1-201 | ENST00000589603 | 568 nt | TSL 4 BASIC | 2.16 | □□□□□ -2.06 | | |
| ATP6AP1L | Q52LC2 | VN1R87P-201 | ENST00000596706 | 487 nt | BASIC | 2.16 | □□□□□ -2.06 | | |
| ATP6AP1L | Q52LC2 | AC099785.1-201 | ENST00000605697 | 437 nt | BASIC | 2.16 | □□□□□ -2.06 | | |
| ATP6AP1L | Q52LC2 | AC013562.2-201 | ENST00000611632 | 603 nt | BASIC | 2.16 | □□□□□ -2.06 | | |
| ATP6AP1L | Q52LC2 | AC008443.7-201 | ENST00000622195 | 246 nt | BASIC | 2.16 | □□□□□ -2.06 | | |
| ATP6AP1L | Q52LC2 | CTSLP2-204 | ENST00000629029 | 392 nt | BASIC | 2.16 | □□□□□ -2.06 | | |
| ATP6AP1L | Q52LC2 | MIR1322-201 | ENST00000638013 | 71 nt | BASIC | 2.16 | □□□□□ -2.06 | | |
| ATP6AP1L | Q52LC2 | AC006927.2-201 | ENST00000639256 | 389 nt | BASIC | 2.16 | □□□□□ -2.06 | | |
| ATP6AP1L | Q52LC2 | OR4M1-202 | ENST00000641200 | 3493 nt | APPRIS P1 BASIC | 2.16 | □□□□□ -2.06 | | |
| ATP6AP1L | Q52LC2 | DDIAS-201 | ENST00000329143 | 3367 nt | APPRIS P2 TSL 1 (best) BASIC | 2.16 | □□□□□ -2.06 | | |
| ATP6AP1L | Q52LC2 | VPS54-202 | ENST00000354504 | 3594 nt | TSL 1 (best) BASIC | 2.15 | □□□□□ -2.07 | | |
| ATP6AP1L | Q52LC2 | RNA5SP289-201 | ENST00000362332 | 137 nt | BASIC | 2.15 | □□□□□ -2.07 | | |
| ATP6AP1L | Q52LC2 | RNU6-76P-201 | ENST00000384060 | 104 nt | BASIC | 2.15 | □□□□□ -2.07 | | |
| ATP6AP1L | Q52LC2 | BCL2L11-207 | ENST00000405953 | 425 nt | TSL 1 (best) BASIC | 2.15 | □□□□□ -2.07 | | |
| ATP6AP1L | Q52LC2 | MTATP6P27-201 | ENST00000416987 | 621 nt | BASIC | 2.15 | □□□□□ -2.07 | | |
| ATP6AP1L | Q52LC2 | AL365496.1-201 | ENST00000426885 | 215 nt | BASIC | 2.15 | □□□□□ -2.07 | | |
| ATP6AP1L | Q52LC2 | AL080248.1-201 | ENST00000428954 | 388 nt | TSL 3 BASIC | 2.15 | □□□□□ -2.07 | | |
| ATP6AP1L | Q52LC2 | MTCO1P3-201 | ENST00000429327 | 192 nt | BASIC | 2.15 | □□□□□ -2.07 | | |
| ATP6AP1L | Q52LC2 | AC092427.1-202 | ENST00000430569 | 476 nt | BASIC | 2.15 | □□□□□ -2.07 | | |
| ATP6AP1L | Q52LC2 | TAAR7P-201 | ENST00000436141 | 242 nt | BASIC | 2.15 | □□□□□ -2.07 | | |
| ATP6AP1L | Q52LC2 | AC018634.1-201 | ENST00000437554 | 401 nt | BASIC | 2.15 | □□□□□ -2.07 | | |
| ATP6AP1L | Q52LC2 | NFIA-AS1-201 | ENST00000442027 | 384 nt | TSL 2 BASIC | 2.15 | □□□□□ -2.07 | | |
| ATP6AP1L | Q52LC2 | AC009237.8-201 | ENST00000445492 | 379 nt | BASIC | 2.15 | □□□□□ -2.07 | | |
| ATP6AP1L | Q52LC2 | AC017099.1-201 | ENST00000448261 | 1028 nt | BASIC | 2.15 | □□□□□ -2.07 | | |
| ATP6AP1L | Q52LC2 | AL163192.1-201 | ENST00000448858 | 708 nt | TSL 5 BASIC | 2.15 | □□□□□ -2.07 | | |
| ATP6AP1L | Q52LC2 | AL139081.1-201 | ENST00000452207 | 382 nt | TSL 3 BASIC | 2.15 | □□□□□ -2.07 | | |
| ATP6AP1L | Q52LC2 | SNORA59A-201 | ENST00000459326 | 152 nt | BASIC | 2.15 | □□□□□ -2.07 | | |
| ATP6AP1L | Q52LC2 | HSPE1P6-201 | ENST00000479457 | 291 nt | BASIC | 2.15 | □□□□□ -2.07 | | |
| ATP6AP1L | Q52LC2 | LARP1BP2-201 | ENST00000486594 | 519 nt | BASIC | 2.15 | □□□□□ -2.07 | | |
| ATP6AP1L | Q52LC2 | LINC02066-201 | ENST00000492731 | 580 nt | TSL 4 BASIC | 2.15 | □□□□□ -2.07 | | |
| ATP6AP1L | Q52LC2 | AC090453.1-201 | ENST00000495560 | 436 nt | BASIC | 2.15 | □□□□□ -2.07 | | |
| ATP6AP1L | Q52LC2 | RNU6-1256P-201 | ENST00000516539 | 103 nt | BASIC | 2.15 | □□□□□ -2.07 | | |
| ATP6AP1L | Q52LC2 | RNU1-104P-201 | ENST00000517280 | 175 nt | BASIC | 2.15 | □□□□□ -2.07 | | |
| ATP6AP1L | Q52LC2 | AC103783.1-201 | ENST00000520506 | 373 nt | BASIC | 2.15 | □□□□□ -2.07 | | |
| ATP6AP1L | Q52LC2 | AC090739.1-201 | ENST00000522190 | 708 nt | TSL 3 BASIC | 2.15 | □□□□□ -2.07 | | |
| ATP6AP1L | Q52LC2 | AC104417.1-201 | ENST00000523974 | 751 nt | BASIC | 2.15 | □□□□□ -2.07 | | |
| ATP6AP1L | Q52LC2 | AC013509.1-201 | ENST00000524269 | 339 nt | TSL 3 BASIC | 2.15 | □□□□□ -2.07 | | |
| ATP6AP1L | Q52LC2 | AC087276.1-201 | ENST00000529659 | 480 nt | BASIC | 2.15 | □□□□□ -2.07 | | |
| ATP6AP1L | Q52LC2 | LINC02309-201 | ENST00000553679 | 207 nt | TSL 3 BASIC | 2.15 | □□□□□ -2.07 | | |
| ATP6AP1L | Q52LC2 | AL352955.1-201 | ENST00000555490 | 332 nt | TSL 3 BASIC | 2.15 | □□□□□ -2.07 | | |
| ATP6AP1L | Q52LC2 | AL049775.2-201 | ENST00000557547 | 558 nt | TSL 4 BASIC | 2.15 | □□□□□ -2.07 | | |
| ATP6AP1L | Q52LC2 | LINC02562-201 | ENST00000561705 | 785 nt | TSL 2 BASIC | 2.15 | □□□□□ -2.07 | | |
| ATP6AP1L | Q52LC2 | AMZ2P1-203 | ENST00000565833 | 850 nt | BASIC | 2.15 | □□□□□ -2.07 | | |
| ATP6AP1L | Q52LC2 | AC103858.1-201 | ENST00000607019 | 476 nt | TSL 3 BASIC | 2.15 | □□□□□ -2.07 | | |
| ATP6AP1L | Q52LC2 | AC004067.1-201 | ENST00000608733 | 700 nt | BASIC | 2.15 | □□□□□ -2.07 | | |
| ATP6AP1L | Q52LC2 | ANKRD36C-207 | ENST00000612359 | 650 nt | TSL 1 (best) BASIC | 2.15 | □□□□□ -2.07 | | |
| ATP6AP1L | Q52LC2 | AC011890.2-201 | ENST00000613393 | 294 nt | BASIC | 2.15 | □□□□□ -2.07 | | |
| ATP6AP1L | Q52LC2 | AC025588.4-201 | ENST00000615802 | 908 nt | BASIC | 2.15 | □□□□□ -2.07 | | |
| ATP6AP1L | Q52LC2 | UCA1.1-201 | ENST00000620952 | 75 nt | BASIC | 2.15 | □□□□□ -2.07 | | |
| ATP6AP1L | Q52LC2 | AC068880.5-201 | ENST00000624331 | 290 nt | BASIC | 2.15 | □□□□□ -2.07 | | |
| ATP6AP1L | Q52LC2 | COMMD6-213 | ENST00000626103 | 120 nt | TSL 5 BASIC | 2.15 | □□□□□ -2.07 | | |
| ATP6AP1L | Q52LC2 | AL109837.2-201 | ENST00000632608 | 295 nt | TSL 3 BASIC | 2.15 | □□□□□ -2.07 | | |
| ATP6AP1L | Q52LC2 | CKAP2P1-201 | ENST00000555477 | 2049 nt | BASIC | 2.15 | □□□□□ -2.07 | | |
| ATP6AP1L | Q52LC2 | AC010680.1-201 | ENST00000590024 | 3590 nt | BASIC | 2.15 | □□□□□ -2.07 | | |
| ATP6AP1L | Q52LC2 | ANKRD36C-201 | ENST00000295246 | 2272 nt | TSL 5 BASIC | 2.15 | □□□□□ -2.07 | | |
| ATP6AP1L | Q52LC2 | KCNIP4-207 | ENST00000509207 | 1301 nt | TSL 1 (best) BASIC | 2.15 | □□□□□ -2.07 | | |
| ATP6AP1L | Q52LC2 | TANK-201 | ENST00000259075 | 2152 nt | APPRIS P1 TSL 1 (best) BASIC | 2.15 | □□□□□ -2.07 | | |
| ATP6AP1L | Q52LC2 | ZBBX-201 | ENST00000307529 | 3071 nt | APPRIS ALT2 TSL 5 BASIC | 2.14 | □□□□□ -2.07 | | |
| ATP6AP1L | Q52LC2 | ZBBX-204 | ENST00000392767 | 3071 nt | APPRIS ALT2 TSL 5 BASIC | 2.14 | □□□□□ -2.07 | | |
| ATP6AP1L | Q52LC2 | AL136537.2-201 | ENST00000562049 | 2471 nt | TSL 1 (best) BASIC | 2.14 | □□□□□ -2.07 | | |
| ATP6AP1L | Q52LC2 | MDM2-205 | ENST00000348801 | 798 nt | TSL 1 (best) BASIC | 2.14 | □□□□□ -2.07 | | |
| ATP6AP1L | Q52LC2 | MIR449A-201 | ENST00000362113 | 91 nt | BASIC | 2.14 | □□□□□ -2.07 | | |
| ATP6AP1L | Q52LC2 | Y_RNA.110-201 | ENST00000363220 | 99 nt | BASIC | 2.14 | □□□□□ -2.07 | | |
| ATP6AP1L | Q52LC2 | RNU6-216P-201 | ENST00000363282 | 104 nt | BASIC | 2.14 | □□□□□ -2.07 | | |
| ATP6AP1L | Q52LC2 | SET-203 | ENST00000372688 | 801 nt | TSL 2 BASIC | 2.14 | □□□□□ -2.07 | | |
| ATP6AP1L | Q52LC2 | SNORA67.4-201 | ENST00000384688 | 142 nt | BASIC | 2.14 | □□□□□ -2.07 | | |
| ATP6AP1L | Q52LC2 | MIR506-201 | ENST00000384998 | 124 nt | BASIC | 2.14 | □□□□□ -2.07 | | |
| ATP6AP1L | Q52LC2 | BCL2L15-203 | ENST00000393320 | 276 nt | TSL 1 (best) BASIC | 2.14 | □□□□□ -2.07 | | |
| ATP6AP1L | Q52LC2 | AL079342.2-201 | ENST00000403367 | 482 nt | BASIC | 2.14 | □□□□□ -2.07 | | |
| ATP6AP1L | Q52LC2 | RPL7P27-201 | ENST00000403775 | 720 nt | BASIC | 2.14 | □□□□□ -2.07 | | |
| ATP6AP1L | Q52LC2 | HNRNPDLP1-201 | ENST00000412834 | 550 nt | BASIC | 2.14 | □□□□□ -2.07 | | |
| ATP6AP1L | Q52LC2 | AL161449.1-201 | ENST00000414531 | 1199 nt | BASIC | 2.14 | □□□□□ -2.07 | | |
| ATP6AP1L | Q52LC2 | AL139421.1-201 | ENST00000423010 | 169 nt | BASIC | 2.14 | □□□□□ -2.07 | | |
| ATP6AP1L | Q52LC2 | LINC01473-202 | ENST00000427108 | 695 nt | TSL 5 BASIC | 2.14 | □□□□□ -2.07 | | |
| ATP6AP1L | Q52LC2 | AC007566.1-201 | ENST00000427458 | 643 nt | TSL 5 BASIC | 2.14 | □□□□□ -2.07 | | |
| ATP6AP1L | Q52LC2 | AF212831.1-201 | ENST00000430064 | 377 nt | TSL 3 BASIC | 2.14 | □□□□□ -2.07 | | |
| ATP6AP1L | Q52LC2 | AL512844.2-201 | ENST00000433990 | 593 nt | BASIC | 2.14 | □□□□□ -2.07 | | |
| ATP6AP1L | Q52LC2 | TRIM60P8Y-201 | ENST00000436338 | 762 nt | BASIC | 2.14 | □□□□□ -2.07 | | |
| ATP6AP1L | Q52LC2 | AL714022.1-201 | ENST00000439897 | 151 nt | BASIC | 2.14 | □□□□□ -2.07 | | |
| ATP6AP1L | Q52LC2 | MIR217HG-201 | ENST00000446139 | 900 nt | TSL 5 BASIC | 2.14 | □□□□□ -2.07 | | |
| ATP6AP1L | Q52LC2 | LINC01162-201 | ENST00000447262 | 447 nt | TSL 5 BASIC | 2.14 | □□□□□ -2.07 | | |
| ATP6AP1L | Q52LC2 | AC116337.2-201 | ENST00000477662 | 156 nt | BASIC | 2.14 | □□□□□ -2.07 | | |
| ATP6AP1L | Q52LC2 | AC109486.1-201 | ENST00000486833 | 374 nt | BASIC | 2.14 | □□□□□ -2.07 | | |
| ATP6AP1L | Q52LC2 | GZMAP1-201 | ENST00000503054 | 631 nt | BASIC | 2.14 | □□□□□ -2.07 | | |
| ATP6AP1L | Q52LC2 | AC008837.1-201 | ENST00000511513 | 412 nt | BASIC | 2.14 | □□□□□ -2.07 | | |
| ATP6AP1L | Q52LC2 | AC022483.1-201 | ENST00000514020 | 567 nt | BASIC | 2.14 | □□□□□ -2.07 | | |
| ATP6AP1L | Q52LC2 | LINC01932-201 | ENST00000520323 | 573 nt | TSL 5 BASIC | 2.14 | □□□□□ -2.07 | | |
| ATP6AP1L | Q52LC2 | AC060765.1-201 | ENST00000522776 | 544 nt | TSL 4 BASIC | 2.14 | □□□□□ -2.07 | | |
| ATP6AP1L | Q52LC2 | SDHAF2-203 | ENST00000534878 | 523 nt | TSL 2 BASIC | 2.14 | □□□□□ -2.07 | | |
| ATP6AP1L | Q52LC2 | MGST1-215 | ENST00000540056 | 546 nt | TSL 3 BASIC | 2.14 | □□□□□ -2.07 | | |
| ATP6AP1L | Q52LC2 | AC107958.2-201 | ENST00000555396 | 592 nt | TSL 3 BASIC | 2.14 | □□□□□ -2.07 | | |
| ATP6AP1L | Q52LC2 | AC114546.1-201 | ENST00000560140 | 473 nt | TSL 3 BASIC | 2.14 | □□□□□ -2.07 | | |
| ATP6AP1L | Q52LC2 | AC018904.1-201 | ENST00000560594 | 542 nt | TSL 3 BASIC | 2.14 | □□□□□ -2.07 | | |
| ATP6AP1L | Q52LC2 | LINC01584-203 | ENST00000567231 | 646 nt | TSL 5 BASIC | 2.14 | □□□□□ -2.07 | | |
| ATP6AP1L | Q52LC2 | MIR4637-201 | ENST00000582405 | 84 nt | BASIC | 2.14 | □□□□□ -2.07 | | |
| ATP6AP1L | Q52LC2 | DNAJC19P3-201 | ENST00000594491 | 331 nt | BASIC | 2.14 | □□□□□ -2.07 | | |
| ATP6AP1L | Q52LC2 | AP001429.1-201 | ENST00000602568 | 530 nt | BASIC | 2.14 | □□□□□ -2.07 | | |