Protein–RNA interactions for Protein: P35499

SCN4A, Sodium channel protein type 4 subunit alpha, humanhuman

Predictions only

Length 1,836 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SCN4AP35499 AL022067.1-201ENST00000602426 454 ntBASIC2.38□□□□□ -2.03
SCN4AP35499 AC005332.6-201ENST00000613178 446 ntBASIC2.38□□□□□ -2.03
SCN4AP35499 AC007275.1-201ENST00000621243 671 ntBASIC2.38□□□□□ -2.03
SCN4AP35499 AP003476.1-201ENST00000623984 516 ntBASIC2.38□□□□□ -2.03
SCN4AP35499 SENP7-201ENST00000314261 4736 ntAPPRIS ALT2 TSL 1 (best) BASIC2.37□□□□□ -2.03
SCN4AP35499 AL157700.1-201ENST00000561973 1432 ntBASIC2.37□□□□□ -2.03
SCN4AP35499 ZNF679-201ENST00000255746 1297 ntAPPRIS P1 TSL 1 (best) BASIC2.37□□□□□ -2.03
SCN4AP35499 OR1L1-201ENST00000309623 933 ntAPPRIS P1 BASIC2.37□□□□□ -2.03
SCN4AP35499 OR1L1-202ENST00000373686 1083 ntBASIC2.37□□□□□ -2.03
SCN4AP35499 AL355143.1-201ENST00000407101 841 ntBASIC2.37□□□□□ -2.03
SCN4AP35499 DPYD-AS2-201ENST00000422259 788 ntTSL 3 BASIC2.37□□□□□ -2.03
SCN4AP35499 AC005208.1-201ENST00000435112 599 ntTSL 3 BASIC2.37□□□□□ -2.03
SCN4AP35499 LINC01510-201ENST00000441991 468 ntTSL 3 BASIC2.37□□□□□ -2.03
SCN4AP35499 IKZF2-209ENST00000442445 551 ntTSL 5 BASIC2.37□□□□□ -2.03
SCN4AP35499 LINC01005-202ENST00000451440 531 ntTSL 4 BASIC2.37□□□□□ -2.03
SCN4AP35499 AC117394.2-201ENST00000487827 323 ntTSL 3 BASIC2.37□□□□□ -2.03
SCN4AP35499 LINC01846-201ENST00000505908 651 ntTSL 5 BASIC2.37□□□□□ -2.03
SCN4AP35499 MTCO1P30-201ENST00000515244 580 ntBASIC2.37□□□□□ -2.03
SCN4AP35499 AC015468.3-201ENST00000518967 417 ntTSL 2 BASIC2.37□□□□□ -2.03
SCN4AP35499 AC087897.1-201ENST00000550134 156 ntBASIC2.37□□□□□ -2.03
SCN4AP35499 AC010735.1-201ENST00000567305 1026 ntBASIC2.37□□□□□ -2.03
SCN4AP35499 AC090079.2-201ENST00000575289 768 ntBASIC2.37□□□□□ -2.03
SCN4AP35499 AC126544.2-201ENST00000625174 749 ntBASIC2.37□□□□□ -2.03
SCN4AP35499 NBPF20-202ENST00000392971 18450 ntAPPRIS P2 TSL 5 BASIC2.37□□□□□ -2.03
SCN4AP35499 KIAA1107-201ENST00000370378 4622 ntTSL 5 BASIC2.36□□□□□ -2.03
SCN4AP35499 IDE-201ENST00000265986 5877 ntAPPRIS P1 TSL 1 (best) BASIC2.36□□□□□ -2.03
SCN4AP35499 SLCO1B3-201ENST00000261196 2840 ntAPPRIS P1 TSL 1 (best) BASIC2.36□□□□□ -2.03
SCN4AP35499 RNU1-51P-201ENST00000365345 176 ntBASIC2.36□□□□□ -2.03
SCN4AP35499 SNORD116-12-201ENST00000384468 92 ntBASIC2.36□□□□□ -2.03
SCN4AP35499 U3.37-201ENST00000408528 213 ntBASIC2.36□□□□□ -2.03
SCN4AP35499 NUP35P2-201ENST00000416748 943 ntBASIC2.36□□□□□ -2.03
SCN4AP35499 AL078590.2-202ENST00000422736 568 ntTSL 3 BASIC2.36□□□□□ -2.03
SCN4AP35499 LINC00368-201ENST00000422994 650 ntTSL 1 (best) BASIC2.36□□□□□ -2.03
SCN4AP35499 LINC01318-201ENST00000423593 597 ntTSL 4 BASIC2.36□□□□□ -2.03
SCN4AP35499 PSMA2P3-201ENST00000429685 675 ntBASIC2.36□□□□□ -2.03
SCN4AP35499 RPL31P54-201ENST00000429803 370 ntBASIC2.36□□□□□ -2.03
SCN4AP35499 LINC01307-201ENST00000439146 474 ntTSL 3 BASIC2.36□□□□□ -2.03
SCN4AP35499 AL050341.1-201ENST00000447743 313 ntBASIC2.36□□□□□ -2.03
SCN4AP35499 AC013828.1-201ENST00000481845 158 ntBASIC2.36□□□□□ -2.03
SCN4AP35499 SUMO2P5-201ENST00000506790 245 ntBASIC2.36□□□□□ -2.03
SCN4AP35499 AC117532.1-201ENST00000514638 323 ntBASIC2.36□□□□□ -2.03
SCN4AP35499 ZNF705CP-201ENST00000530515 889 ntBASIC2.36□□□□□ -2.03
SCN4AP35499 AC109635.4-202ENST00000531666 412 ntBASIC2.36□□□□□ -2.03
SCN4AP35499 AL163973.2-201ENST00000548096 288 ntTSL 3 BASIC2.36□□□□□ -2.03
SCN4AP35499 SMG1P7-203ENST00000573141 619 ntTSL 2 BASIC2.36□□□□□ -2.03
SCN4AP35499 MIR4446-201ENST00000578505 67 ntBASIC2.36□□□□□ -2.03
SCN4AP35499 MIR4303-201ENST00000581299 66 ntBASIC2.36□□□□□ -2.03
SCN4AP35499 AP005230.1-201ENST00000585072 675 ntTSL 5 BASIC2.36□□□□□ -2.03
SCN4AP35499 BNIP3P24-201ENST00000593398 557 ntBASIC2.36□□□□□ -2.03
SCN4AP35499 AL138478.1-201ENST00000612252 832 ntBASIC2.36□□□□□ -2.03
SCN4AP35499 AC010678.1-201ENST00000614118 713 ntBASIC2.36□□□□□ -2.03
SCN4AP35499 AC109454.4-201ENST00000623411 649 ntBASIC2.36□□□□□ -2.03
SCN4AP35499 AC006065.5-201ENST00000623427 349 ntBASIC2.36□□□□□ -2.03
SCN4AP35499 EIF2A-201ENST00000273435 2083 ntAPPRIS ALT1 TSL 1 (best) BASIC2.36□□□□□ -2.03
SCN4AP35499 N4BP2L2-205ENST00000446957 2071 ntTSL 5 BASIC2.36□□□□□ -2.03
SCN4AP35499 ZNF37BP-203ENST00000452306 1352 ntBASIC2.36□□□□□ -2.03
SCN4AP35499 AL139276.1-201ENST00000311910 1001 ntBASIC2.35□□□□□ -2.03
SCN4AP35499 RNU6-1249P-201ENST00000363237 111 ntBASIC2.35□□□□□ -2.03
SCN4AP35499 SNRPE-201ENST00000367208 355 ntTSL 2 BASIC2.35□□□□□ -2.03
SCN4AP35499 RNU6-1257P-201ENST00000384625 110 ntBASIC2.35□□□□□ -2.03
SCN4AP35499 RPL7P27-201ENST00000403775 720 ntBASIC2.35□□□□□ -2.03
SCN4AP35499 OFD1P18Y-201ENST00000420889 959 ntBASIC2.35□□□□□ -2.03
SCN4AP35499 BLOC1S2P1-201ENST00000428431 301 ntBASIC2.35□□□□□ -2.03
SCN4AP35499 AC110995.1-201ENST00000444185 628 ntTSL 3 BASIC2.35□□□□□ -2.03
SCN4AP35499 AC244505.3-201ENST00000454598 187 ntBASIC2.35□□□□□ -2.03
SCN4AP35499 SYPL1P1-201ENST00000473622 768 ntBASIC2.35□□□□□ -2.03
SCN4AP35499 ZBTB20-AS3-201ENST00000498630 464 ntTSL 3 BASIC2.35□□□□□ -2.03
SCN4AP35499 RPL23AP63-201ENST00000498752 471 ntBASIC2.35□□□□□ -2.03
SCN4AP35499 AP004242.1-201ENST00000533701 349 ntBASIC2.35□□□□□ -2.03
SCN4AP35499 AC087894.1-201ENST00000538359 518 ntBASIC2.35□□□□□ -2.03
SCN4AP35499 AC011518.1-202ENST00000592668 407 ntTSL 5 BASIC2.35□□□□□ -2.03
SCN4AP35499 AP000238.1-201ENST00000608759 426 ntBASIC2.35□□□□□ -2.03
SCN4AP35499 AC013437.2-201ENST00000639587 677 ntBASIC2.35□□□□□ -2.03
SCN4AP35499 ST7-AS2-206ENST00000456577 1351 ntTSL 1 (best) BASIC2.35□□□□□ -2.03
SCN4AP35499 MCMDC2-201ENST00000313616 2043 ntTSL 2 BASIC2.35□□□□□ -2.03
SCN4AP35499 FAR1-204ENST00000532502 5820 ntTSL 2 BASIC2.35□□□□□ -2.03
SCN4AP35499 U3.15-201ENST00000365398 212 ntBASIC2.35□□□□□ -2.03
SCN4AP35499 AL627390.1-201ENST00000396055 340 ntBASIC2.35□□□□□ -2.03
SCN4AP35499 RNU2-71P-201ENST00000411395 189 ntBASIC2.35□□□□□ -2.03
SCN4AP35499 AC009276.1-201ENST00000422042 253 ntTSL 5 BASIC2.35□□□□□ -2.03
SCN4AP35499 AC092839.2-201ENST00000431130 377 ntTSL 3 BASIC2.35□□□□□ -2.03
SCN4AP35499 AL139118.1-201ENST00000432707 446 ntTSL 3 BASIC2.35□□□□□ -2.03
SCN4AP35499 CNOT10-AS1-201ENST00000475395 466 ntTSL 3 BASIC2.35□□□□□ -2.03
SCN4AP35499 APOA2-210ENST00000491350 263 ntTSL 1 (best) BASIC2.35□□□□□ -2.03
SCN4AP35499 AC093801.2-201ENST00000503966 1050 ntBASIC2.35□□□□□ -2.03
SCN4AP35499 NDUFS5P6-201ENST00000529136 295 ntBASIC2.35□□□□□ -2.03
SCN4AP35499 AL133279.1-201ENST00000553487 473 ntTSL 3 BASIC2.35□□□□□ -2.03
SCN4AP35499 LRRC37A5P-203ENST00000580181 585 ntBASIC2.35□□□□□ -2.03
SCN4AP35499 HMGN2P28-201ENST00000606102 262 ntBASIC2.35□□□□□ -2.03
SCN4AP35499 U73479.1-201ENST00000618062 168 ntBASIC2.35□□□□□ -2.03
SCN4AP35499 AL596220.1-201ENST00000622121 542 ntTSL 4 BASIC2.35□□□□□ -2.03
SCN4AP35499 AL590227.1-201ENST00000622616 315 ntTSL 5 BASIC2.35□□□□□ -2.03
SCN4AP35499 TMEM161B-210ENST00000511218 1351 ntTSL 2 BASIC2.35□□□□□ -2.03
SCN4AP35499 FKTN-204ENST00000448551 1700 ntTSL 2 BASIC2.34□□□□□ -2.03
SCN4AP35499 CADM2-AS1-201ENST00000476021 2656 ntTSL 1 (best) BASIC2.34□□□□□ -2.03
SCN4AP35499 AC130650.2-201ENST00000618736 2403 ntBASIC2.34□□□□□ -2.03
SCN4AP35499 SNRPEP3-201ENST00000338402 276 ntBASIC2.34□□□□□ -2.03
SCN4AP35499 RNU6-582P-201ENST00000362989 107 ntBASIC2.34□□□□□ -2.03
SCN4AP35499 RNU6-216P-201ENST00000363282 104 ntBASIC2.34□□□□□ -2.03
SCN4AP35499 CNIH4-201ENST00000366856 808 ntAPPRIS ALT1 TSL 2 BASIC2.34□□□□□ -2.03
Retrieved 100 of 98,524 protein–RNA pairs in 111.8 ms