Protein–RNA interactions for Protein: P33076

CIITA, MHC class II transactivator, humanhuman

Predictions only

Length 1,130 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CIITAP33076 AC008741.1-201ENST00000569456 510 ntTSL 3 BASIC3.88□□□□□ -1.79
CIITAP33076 AC011824.2-201ENST00000579896 579 ntTSL 4 BASIC3.88□□□□□ -1.79
CIITAP33076 RPL26-207ENST00000583011 524 ntAPPRIS P1 TSL 3 BASIC3.88□□□□□ -1.79
CIITAP33076 AC015911.6-201ENST00000588445 457 ntTSL 3 BASIC3.88□□□□□ -1.79
CIITAP33076 AL157786.1-204ENST00000594870 506 ntTSL 3 BASIC3.88□□□□□ -1.79
CIITAP33076 AC006557.5-201ENST00000603126 811 ntBASIC3.88□□□□□ -1.79
CIITAP33076 AC024220.1-201ENST00000603675 484 ntBASIC3.88□□□□□ -1.79
CIITAP33076 AL034351.1-201ENST00000605288 668 ntBASIC3.88□□□□□ -1.79
CIITAP33076 RNU6-87P-201ENST00000607561 108 ntBASIC3.88□□□□□ -1.79
CIITAP33076 OR10AB1P-201ENST00000609613 938 ntBASIC3.88□□□□□ -1.79
CIITAP33076 AC072046.2-201ENST00000618366 268 ntBASIC3.88□□□□□ -1.79
CIITAP33076 AL158209.2-201ENST00000619266 216 ntBASIC3.88□□□□□ -1.79
CIITAP33076 LINC01515-217ENST00000620859 694 ntTSL 5 BASIC3.88□□□□□ -1.79
CIITAP33076 AC079597.1-201ENST00000624306 508 ntBASIC3.88□□□□□ -1.79
CIITAP33076 LINC00976-201ENST00000625513 783 ntTSL 3 BASIC3.88□□□□□ -1.79
CIITAP33076 PTPN22-207ENST00000528414 3424 ntTSL 1 (best) BASIC3.88□□□□□ -1.79
CIITAP33076 AGL-205ENST00000370163 7166 ntAPPRIS P1 TSL 1 (best) BASIC3.88□□□□□ -1.79
CIITAP33076 TUSC7-203ENST00000477539 2415 ntTSL 1 (best) BASIC3.87□□□□□ -1.79
CIITAP33076 GABRG2-222ENST00000639975 3662 ntTSL 5 BASIC3.87□□□□□ -1.79
CIITAP33076 C1orf100-202ENST00000366537 483 ntTSL 1 (best) BASIC3.87□□□□□ -1.79
CIITAP33076 AL354864.1-201ENST00000373226 539 ntTSL 2 BASIC3.87□□□□□ -1.79
CIITAP33076 SNORD51-201ENST00000384320 80 ntBASIC3.87□□□□□ -1.79
CIITAP33076 CALM2P3-201ENST00000400429 449 ntBASIC3.87□□□□□ -1.79
CIITAP33076 GSTA9P-201ENST00000406231 611 ntBASIC3.87□□□□□ -1.79
CIITAP33076 RNU2-15P-201ENST00000410692 191 ntBASIC3.87□□□□□ -1.79
CIITAP33076 MTND3P17-201ENST00000416968 344 ntBASIC3.87□□□□□ -1.79
CIITAP33076 AL139415.2-201ENST00000431968 163 ntBASIC3.87□□□□□ -1.79
CIITAP33076 AC093019.2-201ENST00000432294 384 ntTSL 3 BASIC3.87□□□□□ -1.79
CIITAP33076 VDAC1P3-201ENST00000434069 851 ntBASIC3.87□□□□□ -1.79
CIITAP33076 AL596276.1-201ENST00000434465 418 ntBASIC3.87□□□□□ -1.79
CIITAP33076 AC005019.1-201ENST00000436455 431 ntBASIC3.87□□□□□ -1.79
CIITAP33076 AL451074.3-201ENST00000437709 472 ntBASIC3.87□□□□□ -1.79
CIITAP33076 CXorf51B-201ENST00000438525 436 ntAPPRIS P1 TSL 2 BASIC3.87□□□□□ -1.79
CIITAP33076 MTATP6P23-201ENST00000440153 476 ntBASIC3.87□□□□□ -1.79
CIITAP33076 RPL7P52-201ENST00000449200 742 ntBASIC3.87□□□□□ -1.79
CIITAP33076 AC104308.1-201ENST00000454621 333 ntBASIC3.87□□□□□ -1.79
CIITAP33076 AC013267.1-201ENST00000458227 267 ntBASIC3.87□□□□□ -1.79
CIITAP33076 snoU13.24-201ENST00000458998 104 ntBASIC3.87□□□□□ -1.79
CIITAP33076 ARNTL2-AS1-201ENST00000500498 804 ntTSL 1 (best) BASIC3.87□□□□□ -1.79
CIITAP33076 LINC02198-202ENST00000505371 526 ntTSL 5 BASIC3.87□□□□□ -1.79
CIITAP33076 ARL2BPP6-201ENST00000512757 439 ntBASIC3.87□□□□□ -1.79
CIITAP33076 LINC02364-201ENST00000514802 687 ntTSL 2 BASIC3.87□□□□□ -1.79
CIITAP33076 RNU6-27P-201ENST00000516146 107 ntBASIC3.87□□□□□ -1.79
CIITAP33076 Y_RNA.672-201ENST00000516289 104 ntBASIC3.87□□□□□ -1.79
CIITAP33076 SNORA70.19-201ENST00000516717 90 ntBASIC3.87□□□□□ -1.79
CIITAP33076 SNORA31.20-201ENST00000517111 133 ntBASIC3.87□□□□□ -1.79
CIITAP33076 AL139317.3-202ENST00000555689 528 ntTSL 5 BASIC3.87□□□□□ -1.79
CIITAP33076 AC092325.1-201ENST00000566449 554 ntBASIC3.87□□□□□ -1.79
CIITAP33076 AC007493.1-202ENST00000567899 517 ntTSL 2 BASIC3.87□□□□□ -1.79
CIITAP33076 AL391840.1-201ENST00000571144 367 ntBASIC3.87□□□□□ -1.79
CIITAP33076 AC113137.1-201ENST00000591869 558 ntTSL 4 BASIC3.87□□□□□ -1.79
CIITAP33076 AC004853.1-201ENST00000604902 698 ntBASIC3.87□□□□□ -1.79
CIITAP33076 AC244100.1-202ENST00000621554 382 ntBASIC3.87□□□□□ -1.79
CIITAP33076 AC009268.2-201ENST00000621925 457 ntBASIC3.87□□□□□ -1.79
CIITAP33076 AC040168.1-201ENST00000623594 991 ntBASIC3.87□□□□□ -1.79
CIITAP33076 AC091925.2-201ENST00000625059 256 ntBASIC3.87□□□□□ -1.79
CIITAP33076 SOX2-OT-255ENST00000630150 649 ntTSL 5 BASIC3.87□□□□□ -1.79
CIITAP33076 SERPINA7-201ENST00000327674 2642 ntAPPRIS P1 TSL 1 (best) BASIC3.87□□□□□ -1.79
CIITAP33076 TNPO1P3-201ENST00000436471 2662 ntBASIC3.87□□□□□ -1.79
CIITAP33076 AC058791.1-201ENST00000608412 3198 ntBASIC3.86□□□□□ -1.79
CIITAP33076 GPRC6A-201ENST00000310357 2860 ntAPPRIS P1 TSL 1 (best) BASIC3.86□□□□□ -1.79
CIITAP33076 DOCK7-204ENST00000454575 6985 ntAPPRIS ALT2 TSL 1 (best) BASIC3.86□□□□□ -1.79
CIITAP33076 ZNF83-201ENST00000301096 2599 ntAPPRIS P1 TSL 3 BASIC3.86□□□□□ -1.79
CIITAP33076 FRG1BP-201ENST00000278882 761 ntBASIC3.86□□□□□ -1.79
CIITAP33076 DEFB110-201ENST00000371148 384 ntAPPRIS P3 TSL 1 (best) BASIC3.86□□□□□ -1.79
CIITAP33076 RNU6-1103P-201ENST00000384150 107 ntBASIC3.86□□□□□ -1.79
CIITAP33076 AL136116.1-201ENST00000403591 381 ntBASIC3.86□□□□□ -1.79
CIITAP33076 AL033504.1-201ENST00000427015 773 ntTSL 2 BASIC3.86□□□□□ -1.79
CIITAP33076 AL451062.2-201ENST00000427515 271 ntBASIC3.86□□□□□ -1.79
CIITAP33076 AC112518.1-201ENST00000436089 575 ntTSL 4 BASIC3.86□□□□□ -1.79
CIITAP33076 MTND4P18-201ENST00000447010 465 ntBASIC3.86□□□□□ -1.79
CIITAP33076 AC091770.1-201ENST00000456513 373 ntTSL 2 BASIC3.86□□□□□ -1.79
CIITAP33076 AP1S2P1-201ENST00000457344 379 ntBASIC3.86□□□□□ -1.79
CIITAP33076 LINC01546-201ENST00000457435 674 ntTSL 2 BASIC3.86□□□□□ -1.79
CIITAP33076 MTCO3P38-201ENST00000468910 766 ntBASIC3.86□□□□□ -1.79
CIITAP33076 AC034236.1-201ENST00000469891 373 ntBASIC3.86□□□□□ -1.79
CIITAP33076 AC010285.1-201ENST00000470580 392 ntBASIC3.86□□□□□ -1.79
CIITAP33076 RBM43P1-201ENST00000476891 1081 ntBASIC3.86□□□□□ -1.79
CIITAP33076 RPS4XP13-201ENST00000483219 789 ntBASIC3.86□□□□□ -1.79
CIITAP33076 RPS3AP14-201ENST00000483907 780 ntBASIC3.86□□□□□ -1.79
CIITAP33076 AC092944.1-205ENST00000494885 517 ntTSL 4 BASIC3.86□□□□□ -1.79
CIITAP33076 AC019235.1-201ENST00000503847 207 ntBASIC3.86□□□□□ -1.79
CIITAP33076 LINC00492-201ENST00000504436 593 ntTSL 3 BASIC3.86□□□□□ -1.79
CIITAP33076 HMGB1P22-201ENST00000505315 124 ntBASIC3.86□□□□□ -1.79
CIITAP33076 FCF1P8-201ENST00000510322 597 ntBASIC3.86□□□□□ -1.79
CIITAP33076 AC021146.1-201ENST00000511202 716 ntBASIC3.86□□□□□ -1.79
CIITAP33076 PCAT4-202ENST00000514836 373 ntTSL 3 BASIC3.86□□□□□ -1.79
CIITAP33076 LINC02374-202ENST00000515222 578 ntTSL 4 BASIC3.86□□□□□ -1.79
CIITAP33076 AC107934.1-201ENST00000522215 217 ntBASIC3.86□□□□□ -1.79
CIITAP33076 AC090539.1-201ENST00000523907 434 ntTSL 3 BASIC3.86□□□□□ -1.79
CIITAP33076 AL358937.1-201ENST00000524512 336 ntTSL 2 BASIC3.86□□□□□ -1.79
CIITAP33076 AHI1-217ENST00000534469 680 ntTSL 3 BASIC3.86□□□□□ -1.79
CIITAP33076 AC018630.1-201ENST00000541376 925 ntBASIC3.86□□□□□ -1.79
CIITAP33076 OR5V1-216ENST00000543825 1048 ntAPPRIS P1 BASIC3.86□□□□□ -1.79
CIITAP33076 AC133480.1-201ENST00000547563 381 ntTSL 3 BASIC3.86□□□□□ -1.79
CIITAP33076 AC011773.2-201ENST00000551479 285 ntTSL 5 BASIC3.86□□□□□ -1.79
CIITAP33076 ARL1-211ENST00000551828 776 ntTSL 5 BASIC3.86□□□□□ -1.79
CIITAP33076 AC016597.1-201ENST00000564893 528 ntTSL 4 BASIC3.86□□□□□ -1.79
CIITAP33076 AC234778.2-201ENST00000566241 354 ntBASIC3.86□□□□□ -1.79
CIITAP33076 AC090615.1-201ENST00000577519 154 ntBASIC3.86□□□□□ -1.79
Retrieved 100 of 98,524 protein–RNA pairs in 102 ms