Protein–RNA interactions for Protein: O75056

SDC3, Syndecan-3, humanhuman

Predictions only

Length 442 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SDC3O75056 AC010653.1-201ENST00000571108 881 ntBASIC2.9□□□□□ -1.95
SDC3O75056 FOPNL-205ENST00000573429 646 ntTSL 3 BASIC2.9□□□□□ -1.95
SDC3O75056 ELOCP29-201ENST00000588193 334 ntBASIC2.9□□□□□ -1.95
SDC3O75056 SOX2-OT-224ENST00000595313 716 ntTSL 5 BASIC2.9□□□□□ -1.95
SDC3O75056 AC015871.2-201ENST00000603605 948 ntBASIC2.9□□□□□ -1.95
SDC3O75056 AC034229.4-201ENST00000607861 441 ntBASIC2.9□□□□□ -1.95
SDC3O75056 AC004067.1-201ENST00000608733 700 ntBASIC2.9□□□□□ -1.95
SDC3O75056 C9orf153-205ENST00000617985 333 ntAPPRIS ALT2 TSL 5 BASIC2.9□□□□□ -1.95
SDC3O75056 BIRC6-AS2-201ENST00000623382 589 ntTSL 2 BASIC2.9□□□□□ -1.95
SDC3O75056 AP003485.2-201ENST00000623636 610 ntBASIC2.9□□□□□ -1.95
SDC3O75056 AL445259.1-201ENST00000587106 2984 ntTSL 5 BASIC2.9□□□□□ -1.95
SDC3O75056 USP45-208ENST00000500704 5826 ntAPPRIS P1 TSL 5 BASIC2.9□□□□□ -1.95
SDC3O75056 MTND5P19-201ENST00000424872 1794 ntBASIC2.89□□□□□ -1.95
SDC3O75056 HDX-206ENST00000506585 6158 ntTSL 2 BASIC2.89□□□□□ -1.95
SDC3O75056 RNU6-97P-201ENST00000363387 104 ntBASIC2.89□□□□□ -1.95
SDC3O75056 MIR887-201ENST00000401258 79 ntBASIC2.89□□□□□ -1.95
SDC3O75056 MTND4P13-201ENST00000402078 1023 ntBASIC2.89□□□□□ -1.95
SDC3O75056 AL356421.1-201ENST00000403255 413 ntBASIC2.89□□□□□ -1.95
SDC3O75056 AL391704.1-203ENST00000414903 462 ntTSL 3 BASIC2.89□□□□□ -1.95
SDC3O75056 LINC01427-201ENST00000420928 504 ntTSL 3 BASIC2.89□□□□□ -1.95
SDC3O75056 LINC01673-201ENST00000426418 468 ntTSL 3 BASIC2.89□□□□□ -1.95
SDC3O75056 LINC01674-201ENST00000427446 504 ntTSL 3 BASIC2.89□□□□□ -1.95
SDC3O75056 AC093151.1-201ENST00000427711 313 ntBASIC2.89□□□□□ -1.95
SDC3O75056 AL356867.1-201ENST00000429623 299 ntBASIC2.89□□□□□ -1.95
SDC3O75056 OR4K11P-201ENST00000431829 904 ntBASIC2.89□□□□□ -1.95
SDC3O75056 SETP8-201ENST00000435341 628 ntBASIC2.89□□□□□ -1.95
SDC3O75056 AC090774.1-201ENST00000435925 246 ntBASIC2.89□□□□□ -1.95
SDC3O75056 PATE1-202ENST00000437148 457 ntAPPRIS ALT2 TSL 1 (best) BASIC2.89□□□□□ -1.95
SDC3O75056 AC073174.1-201ENST00000444155 415 ntTSL 5 BASIC2.89□□□□□ -1.95
SDC3O75056 GAPDHP27-201ENST00000447427 1020 ntBASIC2.89□□□□□ -1.95
SDC3O75056 RPL23AP35-201ENST00000451906 501 ntBASIC2.89□□□□□ -1.95
SDC3O75056 MTND2P24-201ENST00000453434 806 ntBASIC2.89□□□□□ -1.95
SDC3O75056 AC010099.1-201ENST00000455434 375 ntBASIC2.89□□□□□ -1.95
SDC3O75056 HSPE1P6-201ENST00000479457 291 ntBASIC2.89□□□□□ -1.95
SDC3O75056 AL049874.1-201ENST00000489560 388 ntBASIC2.89□□□□□ -1.95
SDC3O75056 AC105389.2-201ENST00000506475 435 ntTSL 3 BASIC2.89□□□□□ -1.95
SDC3O75056 HIGD1AP13-201ENST00000509878 289 ntBASIC2.89□□□□□ -1.95
SDC3O75056 AC012413.1-201ENST00000521294 519 ntTSL 2 BASIC2.89□□□□□ -1.95
SDC3O75056 EEF1A1P37-201ENST00000522748 715 ntBASIC2.89□□□□□ -1.95
SDC3O75056 OR5G4P-201ENST00000525251 760 ntBASIC2.89□□□□□ -1.95
SDC3O75056 AC007536.1-201ENST00000533382 349 ntBASIC2.89□□□□□ -1.95
SDC3O75056 OR7K1P-201ENST00000546439 926 ntBASIC2.89□□□□□ -1.95
SDC3O75056 AC069228.1-202ENST00000550272 737 ntTSL 3 BASIC2.89□□□□□ -1.95
SDC3O75056 AC020891.3-201ENST00000560011 363 ntTSL 3 BASIC2.89□□□□□ -1.95
SDC3O75056 LINC01570-201ENST00000561572 434 ntTSL 3 BASIC2.89□□□□□ -1.95
SDC3O75056 AC091544.5-202ENST00000568297 374 ntTSL 3 BASIC2.89□□□□□ -1.95
SDC3O75056 AL031281.1-201ENST00000604049 488 ntBASIC2.89□□□□□ -1.95
SDC3O75056 ATP1B3P1-201ENST00000605365 821 ntBASIC2.89□□□□□ -1.95
SDC3O75056 AC024560.3-201ENST00000608482 349 ntBASIC2.89□□□□□ -1.95
SDC3O75056 Metazoa_SRP.117-201ENST00000615106 292 ntBASIC2.89□□□□□ -1.95
SDC3O75056 CDKN2B-AS.1-201ENST00000617921 150 ntBASIC2.89□□□□□ -1.95
SDC3O75056 IGSF11-AS1-201ENST00000477009 1604 ntTSL 2 BASIC2.89□□□□□ -1.95
SDC3O75056 CC2D2B-210ENST00000636965 3247 ntTSL 5 BASIC2.89□□□□□ -1.95
SDC3O75056 AL136537.2-201ENST00000562049 2471 ntTSL 1 (best) BASIC2.88□□□□□ -1.95
SDC3O75056 ASPN-201ENST00000375543 2237 ntTSL 2 BASIC2.88□□□□□ -1.95
SDC3O75056 AC093831.2-201ENST00000624393 3427 ntBASIC2.88□□□□□ -1.95
SDC3O75056 TLR6-205ENST00000610323 1443 ntTSL 5 BASIC2.88□□□□□ -1.95
SDC3O75056 AL391994.1-201ENST00000254724 282 ntBASIC2.88□□□□□ -1.95
SDC3O75056 AC119751.3-201ENST00000399720 670 ntBASIC2.88□□□□□ -1.95
SDC3O75056 MIR320C1-201ENST00000408566 88 ntBASIC2.88□□□□□ -1.95
SDC3O75056 TPMTP3-201ENST00000411928 735 ntBASIC2.88□□□□□ -1.95
SDC3O75056 AC113331.1-201ENST00000428160 869 ntTSL 2 BASIC2.88□□□□□ -1.95
SDC3O75056 AL590383.1-201ENST00000428602 75 ntBASIC2.88□□□□□ -1.95
SDC3O75056 RPS20P5-201ENST00000434808 360 ntBASIC2.88□□□□□ -1.95
SDC3O75056 ZNF385D-AS2-201ENST00000436306 424 ntTSL 5 BASIC2.88□□□□□ -1.95
SDC3O75056 LINC00529-201ENST00000443854 241 ntTSL 2 BASIC2.88□□□□□ -1.95
SDC3O75056 AL451164.2-201ENST00000445932 597 ntTSL 2 BASIC2.88□□□□□ -1.95
SDC3O75056 AC108938.1-201ENST00000451204 136 ntBASIC2.88□□□□□ -1.95
SDC3O75056 RPS29P12-201ENST00000460178 152 ntBASIC2.88□□□□□ -1.95
SDC3O75056 RPL30P5-201ENST00000494923 336 ntBASIC2.88□□□□□ -1.95
SDC3O75056 AC118282.1-201ENST00000506408 765 ntBASIC2.88□□□□□ -1.95
SDC3O75056 PANCR-202ENST00000513690 448 ntTSL 2 BASIC2.88□□□□□ -1.95
SDC3O75056 RNU1-143P-201ENST00000516296 146 ntBASIC2.88□□□□□ -1.95
SDC3O75056 AC022360.2-202ENST00000517308 407 ntTSL 3 BASIC2.88□□□□□ -1.95
SDC3O75056 AC018541.1-202ENST00000518687 584 ntTSL 4 BASIC2.88□□□□□ -1.95
SDC3O75056 IGHVII-62-1-201ENST00000519283 235 ntBASIC2.88□□□□□ -1.95
SDC3O75056 ZFPM2-AS1-204ENST00000520433 748 ntTSL 3 BASIC2.88□□□□□ -1.95
SDC3O75056 LINC02300-201ENST00000549742 665 ntTSL 4 BASIC2.88□□□□□ -1.95
SDC3O75056 MRPL42-208ENST00000552217 920 ntAPPRIS P2 TSL 2 BASIC2.88□□□□□ -1.95
SDC3O75056 LINC02311-201ENST00000556144 383 ntTSL 3 BASIC2.88□□□□□ -1.95
SDC3O75056 CASC16-202ENST00000563844 610 ntTSL 3 BASIC2.88□□□□□ -1.95
SDC3O75056 AC091691.2-201ENST00000581940 567 ntTSL 4 BASIC2.88□□□□□ -1.95
SDC3O75056 MIR4999-201ENST00000585029 91 ntBASIC2.88□□□□□ -1.95
SDC3O75056 AL035413.2-201ENST00000604801 525 ntBASIC2.88□□□□□ -1.95
SDC3O75056 AC007619.2-201ENST00000605743 379 ntBASIC2.88□□□□□ -1.95
SDC3O75056 AC107294.1-201ENST00000609524 467 ntBASIC2.88□□□□□ -1.95
SDC3O75056 U1.23-201ENST00000610293 146 ntBASIC2.88□□□□□ -1.95
SDC3O75056 RNU1-68P-201ENST00000615382 146 ntBASIC2.88□□□□□ -1.95
SDC3O75056 U1.39-201ENST00000621562 146 ntBASIC2.88□□□□□ -1.95
SDC3O75056 AC009039.2-201ENST00000624524 529 ntBASIC2.88□□□□□ -1.95
SDC3O75056 FAM35BP-202ENST00000497389 3337 ntBASIC2.88□□□□□ -1.95
SDC3O75056 TOPORSLP1-203ENST00000493279 2871 ntTSL 4 BASIC2.88□□□□□ -1.95
SDC3O75056 SPEF2-203ENST00000440995 5964 ntAPPRIS ALT2 TSL 5 BASIC2.88□□□□□ -1.95
SDC3O75056 ANKRD26P2-201ENST00000445530 1710 ntBASIC2.88□□□□□ -1.95
SDC3O75056 FAM214A-201ENST00000261844 4217 ntAPPRIS P1 TSL 1 (best) BASIC2.87□□□□□ -1.95
SDC3O75056 AL672167.1-206ENST00000356293 943 ntBASIC2.87□□□□□ -1.95
SDC3O75056 RNU6-433P-201ENST00000363216 104 ntBASIC2.87□□□□□ -1.95
SDC3O75056 RNU6-1214P-201ENST00000363650 109 ntBASIC2.87□□□□□ -1.95
SDC3O75056 RNA5SP126-201ENST00000365092 109 ntBASIC2.87□□□□□ -1.95
SDC3O75056 RNU6-723P-201ENST00000383973 107 ntBASIC2.87□□□□□ -1.95
Retrieved 100 of 98,524 protein–RNA pairs in 240.2 ms