Protein–RNA interactions for Protein: Q9Y5H4

PCDHGA1, Protocadherin gamma-A1, humanhuman

Predictions only

Length 931 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDHGA1Q9Y5H4 AC098862.1-201ENST00000504991 413 ntBASIC3.19□□□□□ -1.9
PCDHGA1Q9Y5H4 AC098868.1-201ENST00000512628 624 ntTSL 2 BASIC3.19□□□□□ -1.9
PCDHGA1Q9Y5H4 AC027335.1-201ENST00000515377 543 ntTSL 4 BASIC3.19□□□□□ -1.9
PCDHGA1Q9Y5H4 RNU4ATAC15P-201ENST00000516415 126 ntBASIC3.19□□□□□ -1.9
PCDHGA1Q9Y5H4 RNU6-678P-201ENST00000516832 109 ntBASIC3.19□□□□□ -1.9
PCDHGA1Q9Y5H4 MAL2-206ENST00000522187 547 ntTSL 4 BASIC3.19□□□□□ -1.9
PCDHGA1Q9Y5H4 PSMA2P1-201ENST00000526365 646 ntBASIC3.19□□□□□ -1.9
PCDHGA1Q9Y5H4 AC026333.2-201ENST00000542164 106 ntBASIC3.19□□□□□ -1.9
PCDHGA1Q9Y5H4 AC011602.1-201ENST00000546484 331 ntBASIC3.19□□□□□ -1.9
PCDHGA1Q9Y5H4 AC079203.2-201ENST00000559867 387 ntTSL 2 BASIC3.19□□□□□ -1.9
PCDHGA1Q9Y5H4 ANKRD36BP2-206ENST00000575193 1245 ntBASIC3.19□□□□□ -1.9
PCDHGA1Q9Y5H4 AP005059.2-201ENST00000577527 578 ntTSL 3 BASIC3.19□□□□□ -1.9
PCDHGA1Q9Y5H4 ZNF28-207ENST00000594602 684 ntTSL 5 BASIC3.19□□□□□ -1.9
PCDHGA1Q9Y5H4 AC008277.1-203ENST00000594921 1149 ntTSL 5 BASIC3.19□□□□□ -1.9
PCDHGA1Q9Y5H4 AP001972.3-202ENST00000603012 375 ntTSL 3 BASIC3.19□□□□□ -1.9
PCDHGA1Q9Y5H4 AL353778.1-201ENST00000603149 408 ntBASIC3.19□□□□□ -1.9
PCDHGA1Q9Y5H4 AL139344.1-201ENST00000605228 195 ntBASIC3.19□□□□□ -1.9
PCDHGA1Q9Y5H4 AC018638.7-201ENST00000605836 1114 ntBASIC3.19□□□□□ -1.9
PCDHGA1Q9Y5H4 AL157817.1-201ENST00000614264 790 ntBASIC3.19□□□□□ -1.9
PCDHGA1Q9Y5H4 SOX2OT_exon1.1-201ENST00000614902 232 ntBASIC3.19□□□□□ -1.9
PCDHGA1Q9Y5H4 AC131159.1-201ENST00000621854 213 ntBASIC3.19□□□□□ -1.9
PCDHGA1Q9Y5H4 AL391597.2-201ENST00000635698 479 ntTSL 5 BASIC3.19□□□□□ -1.9
PCDHGA1Q9Y5H4 MIR7153-201ENST00000637758 57 ntBASIC3.19□□□□□ -1.9
PCDHGA1Q9Y5H4 AC011124.1-201ENST00000521221 1762 ntTSL 2 BASIC3.19□□□□□ -1.9
PCDHGA1Q9Y5H4 ZNF83-201ENST00000301096 2599 ntAPPRIS P1 TSL 3 BASIC3.19□□□□□ -1.9
PCDHGA1Q9Y5H4 DPP10-205ENST00000410059 6278 ntAPPRIS ALT2 TSL 1 (best) BASIC3.19□□□□□ -1.9
PCDHGA1Q9Y5H4 ANKRD26P2-201ENST00000445530 1710 ntBASIC3.19□□□□□ -1.9
PCDHGA1Q9Y5H4 CR383658.2-201ENST00000547576 1525 ntBASIC3.19□□□□□ -1.9
PCDHGA1Q9Y5H4 MIER3-203ENST00000381213 5198 ntAPPRIS P3 TSL 1 (best) BASIC3.18□□□□□ -1.9
PCDHGA1Q9Y5H4 TIGD2-201ENST00000317005 2083 ntAPPRIS P1 BASIC3.18□□□□□ -1.9
PCDHGA1Q9Y5H4 AC012321.1-201ENST00000561622 1588 ntBASIC3.18□□□□□ -1.9
PCDHGA1Q9Y5H4 KLRF1-202ENST00000354855 838 ntTSL 1 (best) BASIC3.18□□□□□ -1.9
PCDHGA1Q9Y5H4 RNU6-283P-201ENST00000364788 107 ntBASIC3.18□□□□□ -1.9
PCDHGA1Q9Y5H4 RNA5-8SP4-201ENST00000365096 150 ntBASIC3.18□□□□□ -1.9
PCDHGA1Q9Y5H4 RNU5A-2P-201ENST00000384337 116 ntBASIC3.18□□□□□ -1.9
PCDHGA1Q9Y5H4 U3.20-201ENST00000390909 217 ntBASIC3.18□□□□□ -1.9
PCDHGA1Q9Y5H4 AC063979.1-201ENST00000415539 377 ntBASIC3.18□□□□□ -1.9
PCDHGA1Q9Y5H4 AP000432.1-201ENST00000416641 516 ntTSL 3 BASIC3.18□□□□□ -1.9
PCDHGA1Q9Y5H4 AL158834.1-201ENST00000419441 466 ntTSL 5 BASIC3.18□□□□□ -1.9
PCDHGA1Q9Y5H4 AL445669.1-201ENST00000426743 755 ntBASIC3.18□□□□□ -1.9
PCDHGA1Q9Y5H4 AC092573.2-201ENST00000434546 243 ntBASIC3.18□□□□□ -1.9
PCDHGA1Q9Y5H4 ATP5C1P1-201ENST00000441945 895 ntBASIC3.18□□□□□ -1.9
PCDHGA1Q9Y5H4 ATG12P2-201ENST00000456830 416 ntBASIC3.18□□□□□ -1.9
PCDHGA1Q9Y5H4 RN7SL863P-201ENST00000462370 296 ntBASIC3.18□□□□□ -1.9
PCDHGA1Q9Y5H4 Z84488.1-201ENST00000476099 530 ntTSL 2 BASIC3.18□□□□□ -1.9
PCDHGA1Q9Y5H4 AC106872.3-201ENST00000495104 446 ntBASIC3.18□□□□□ -1.9
PCDHGA1Q9Y5H4 THAP6-205ENST00000504190 1004 ntTSL 1 (best) BASIC3.18□□□□□ -1.9
PCDHGA1Q9Y5H4 TEMN3-AS1-201ENST00000510211 401 ntTSL 3 BASIC3.18□□□□□ -1.9
PCDHGA1Q9Y5H4 AC106895.1-201ENST00000515825 548 ntTSL 4 BASIC3.18□□□□□ -1.9
PCDHGA1Q9Y5H4 RNU6-798P-201ENST00000516912 103 ntBASIC3.18□□□□□ -1.9
PCDHGA1Q9Y5H4 RN7SKP60-201ENST00000516985 239 ntBASIC3.18□□□□□ -1.9
PCDHGA1Q9Y5H4 AC008662.2-201ENST00000522426 389 ntTSL 5 BASIC3.18□□□□□ -1.9
PCDHGA1Q9Y5H4 AHI1-212ENST00000528103 441 ntTSL 1 (best) BASIC3.18□□□□□ -1.9
PCDHGA1Q9Y5H4 CCDC179-202ENST00000532798 791 ntAPPRIS P1 TSL 2 BASIC3.18□□□□□ -1.9
PCDHGA1Q9Y5H4 AC068587.4-201ENST00000533893 186 ntBASIC3.18□□□□□ -1.9
PCDHGA1Q9Y5H4 RRAS2-210ENST00000534746 993 ntTSL 2 BASIC3.18□□□□□ -1.9
PCDHGA1Q9Y5H4 KLRF2-201ENST00000535540 731 ntAPPRIS P1 TSL 1 (best) BASIC3.18□□□□□ -1.9
PCDHGA1Q9Y5H4 AC124947.2-202ENST00000552735 133 ntBASIC3.18□□□□□ -1.9
PCDHGA1Q9Y5H4 AL442163.1-201ENST00000557251 515 ntTSL 5 BASIC3.18□□□□□ -1.9
PCDHGA1Q9Y5H4 AC026474.1-201ENST00000562422 428 ntTSL 2 BASIC3.18□□□□□ -1.9
PCDHGA1Q9Y5H4 LINC01584-203ENST00000567231 646 ntTSL 5 BASIC3.18□□□□□ -1.9
PCDHGA1Q9Y5H4 HMGB1P6-201ENST00000569046 646 ntBASIC3.18□□□□□ -1.9
PCDHGA1Q9Y5H4 MIR4738-201ENST00000579134 87 ntBASIC3.18□□□□□ -1.9
PCDHGA1Q9Y5H4 AC090616.5-201ENST00000581225 299 ntTSL 5 BASIC3.18□□□□□ -1.9
PCDHGA1Q9Y5H4 TTN-AS1-212ENST00000582847 1036 ntTSL 5 BASIC3.18□□□□□ -1.9
PCDHGA1Q9Y5H4 RPL12P50-201ENST00000603116 116 ntBASIC3.18□□□□□ -1.9
PCDHGA1Q9Y5H4 AC068313.1-201ENST00000604028 1008 ntBASIC3.18□□□□□ -1.9
PCDHGA1Q9Y5H4 AL162713.1-201ENST00000604480 262 ntBASIC3.18□□□□□ -1.9
PCDHGA1Q9Y5H4 AC092142.2-201ENST00000614642 354 ntTSL 3 BASIC3.18□□□□□ -1.9
PCDHGA1Q9Y5H4 AC007671.2-201ENST00000637344 619 ntBASIC3.18□□□□□ -1.9
PCDHGA1Q9Y5H4 KTN1-206ENST00000413890 4473 ntAPPRIS ALT2 TSL 5 BASIC3.18□□□□□ -1.9
PCDHGA1Q9Y5H4 TTN-204ENST00000360870 18218 ntTSL 5 BASIC3.18□□□□□ -1.9
PCDHGA1Q9Y5H4 EXOC6-203ENST00000371552 3564 ntTSL 5 BASIC3.17□□□□□ -1.9
PCDHGA1Q9Y5H4 LINC02510-201ENST00000509798 1576 ntTSL 1 (best) BASIC3.17□□□□□ -1.9
PCDHGA1Q9Y5H4 NBEAL1-203ENST00000449802 10938 ntAPPRIS P1 TSL 5 BASIC3.17□□□□□ -1.9
PCDHGA1Q9Y5H4 AGTR1-204ENST00000418473 2071 ntTSL 5 BASIC3.17□□□□□ -1.9
PCDHGA1Q9Y5H4 SNORA36C-201ENST00000384289 132 ntBASIC3.17□□□□□ -1.9
PCDHGA1Q9Y5H4 MIR514A1-201ENST00000385133 98 ntBASIC3.17□□□□□ -1.9
PCDHGA1Q9Y5H4 TRAJ59-201ENST00000390480 54 ntAPPRIS P1 BASIC3.17□□□□□ -1.9
PCDHGA1Q9Y5H4 AC239803.1-203ENST00000411978 452 ntTSL 2 BASIC3.17□□□□□ -1.9
PCDHGA1Q9Y5H4 AL390962.1-201ENST00000421507 526 ntTSL 3 BASIC3.17□□□□□ -1.9
PCDHGA1Q9Y5H4 NBDY-202ENST00000423617 543 ntAPPRIS P1 TSL 2 BASIC3.17□□□□□ -1.9
PCDHGA1Q9Y5H4 RPL35AP12-201ENST00000425362 338 ntBASIC3.17□□□□□ -1.9
PCDHGA1Q9Y5H4 AC092447.3-201ENST00000426027 686 ntBASIC3.17□□□□□ -1.9
PCDHGA1Q9Y5H4 MTND5P25-201ENST00000430499 799 ntBASIC3.17□□□□□ -1.9
PCDHGA1Q9Y5H4 AL357552.1-201ENST00000445254 415 ntBASIC3.17□□□□□ -1.9
PCDHGA1Q9Y5H4 MRPS31P2-201ENST00000451581 518 ntBASIC3.17□□□□□ -1.9
PCDHGA1Q9Y5H4 AL031183.1-201ENST00000457667 207 ntBASIC3.17□□□□□ -1.9
PCDHGA1Q9Y5H4 RPS20P20-201ENST00000460498 340 ntBASIC3.17□□□□□ -1.9
PCDHGA1Q9Y5H4 RPL23AP67-201ENST00000465341 474 ntBASIC3.17□□□□□ -1.9
PCDHGA1Q9Y5H4 RN7SKP282-201ENST00000516824 299 ntBASIC3.17□□□□□ -1.9
PCDHGA1Q9Y5H4 RNA5SP291-201ENST00000517222 105 ntBASIC3.17□□□□□ -1.9
PCDHGA1Q9Y5H4 NARSP2-202ENST00000522022 349 ntTSL 3 BASIC3.17□□□□□ -1.9
PCDHGA1Q9Y5H4 CASP1P1-201ENST00000526345 212 ntBASIC3.17□□□□□ -1.9
PCDHGA1Q9Y5H4 MTATP6P15-201ENST00000527233 835 ntBASIC3.17□□□□□ -1.9
PCDHGA1Q9Y5H4 AP004247.1-201ENST00000531556 1289 ntBASIC3.17□□□□□ -1.9
PCDHGA1Q9Y5H4 AC069228.1-202ENST00000550272 737 ntTSL 3 BASIC3.17□□□□□ -1.9
PCDHGA1Q9Y5H4 H3F3AP1-201ENST00000559984 334 ntBASIC3.17□□□□□ -1.9
PCDHGA1Q9Y5H4 AC113146.1-202ENST00000560259 433 ntTSL 5 BASIC3.17□□□□□ -1.9
PCDHGA1Q9Y5H4 MIR544B-201ENST00000582372 78 ntBASIC3.17□□□□□ -1.9
Retrieved 100 of 98,524 protein–RNA pairs in 132.3 ms