Protein–RNA interactions for Protein: Q9UN37

VPS4A, Vacuolar protein sorting-associated protein 4A, humanhuman

Predictions only

Length 437 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4AQ9UN37 TNPO1P3-201ENST00000436471 2662 ntBASIC3.85□□□□□ -1.79
VPS4AQ9UN37 P2RY13-201ENST00000325602 2764 ntAPPRIS P1 TSL 1 (best) BASIC3.85□□□□□ -1.79
VPS4AQ9UN37 WDR72-201ENST00000360509 5887 ntAPPRIS P2 TSL 1 (best) BASIC3.84□□□□□ -1.79
VPS4AQ9UN37 CLIC2-202ENST00000369449 2655 ntAPPRIS P1 TSL 1 (best) BASIC3.84□□□□□ -1.79
VPS4AQ9UN37 BDP1P-201ENST00000582658 1990 ntBASIC3.84□□□□□ -1.79
VPS4AQ9UN37 SNORA60-201ENST00000362396 134 ntBASIC3.84□□□□□ -1.79
VPS4AQ9UN37 RNU6-1120P-201ENST00000362988 108 ntBASIC3.84□□□□□ -1.79
VPS4AQ9UN37 RNA5SP167-201ENST00000365461 116 ntBASIC3.84□□□□□ -1.79
VPS4AQ9UN37 MIR491-201ENST00000384877 84 ntBASIC3.84□□□□□ -1.79
VPS4AQ9UN37 AL078595.1-201ENST00000404458 226 ntBASIC3.84□□□□□ -1.79
VPS4AQ9UN37 CCDC58P2-201ENST00000417131 366 ntBASIC3.84□□□□□ -1.79
VPS4AQ9UN37 LINC01351-201ENST00000424735 526 ntTSL 2 BASIC3.84□□□□□ -1.79
VPS4AQ9UN37 TRIM60P10Y-201ENST00000425589 751 ntBASIC3.84□□□□□ -1.79
VPS4AQ9UN37 AL022396.1-201ENST00000427011 386 ntTSL 3 BASIC3.84□□□□□ -1.79
VPS4AQ9UN37 AL033504.1-201ENST00000427015 773 ntTSL 2 BASIC3.84□□□□□ -1.79
VPS4AQ9UN37 AL589986.2-201ENST00000429352 397 ntTSL 2 BASIC3.84□□□□□ -1.79
VPS4AQ9UN37 TRIM60P8Y-201ENST00000436338 762 ntBASIC3.84□□□□□ -1.79
VPS4AQ9UN37 RPS15AP9-201ENST00000439856 381 ntBASIC3.84□□□□□ -1.79
VPS4AQ9UN37 WASF1P1-201ENST00000447560 1131 ntBASIC3.84□□□□□ -1.79
VPS4AQ9UN37 AL500522.2-201ENST00000448562 343 ntBASIC3.84□□□□□ -1.79
VPS4AQ9UN37 AL359095.1-201ENST00000457383 635 ntTSL 3 BASIC3.84□□□□□ -1.79
VPS4AQ9UN37 RPL31P58-201ENST00000469001 379 ntBASIC3.84□□□□□ -1.79
VPS4AQ9UN37 PTP4A2-203ENST00000470404 575 ntTSL 3 BASIC3.84□□□□□ -1.79
VPS4AQ9UN37 RPS3AP50-201ENST00000487064 803 ntBASIC3.84□□□□□ -1.79
VPS4AQ9UN37 UBE2Q2P9-201ENST00000490086 202 ntBASIC3.84□□□□□ -1.79
VPS4AQ9UN37 AC079382.1-201ENST00000493346 557 ntBASIC3.84□□□□□ -1.79
VPS4AQ9UN37 AC092673.1-201ENST00000510203 428 ntTSL 3 BASIC3.84□□□□□ -1.79
VPS4AQ9UN37 AC105914.1-201ENST00000511798 226 ntBASIC3.84□□□□□ -1.79
VPS4AQ9UN37 AC023141.12-201ENST00000512399 199 ntBASIC3.84□□□□□ -1.79
VPS4AQ9UN37 NARSP2-201ENST00000518524 679 ntBASIC3.84□□□□□ -1.79
VPS4AQ9UN37 AP002768.1-201ENST00000526741 320 ntTSL 3 BASIC3.84□□□□□ -1.79
VPS4AQ9UN37 AC118273.2-201ENST00000532092 465 ntBASIC3.84□□□□□ -1.79
VPS4AQ9UN37 LINC01495-202ENST00000534135 343 ntTSL 2 BASIC3.84□□□□□ -1.79
VPS4AQ9UN37 AC140847.1-201ENST00000538025 534 ntTSL 4 BASIC3.84□□□□□ -1.79
VPS4AQ9UN37 AC090531.1-202ENST00000548450 499 ntTSL 3 BASIC3.84□□□□□ -1.79
VPS4AQ9UN37 LINC02386-202ENST00000551287 564 ntTSL 4 BASIC3.84□□□□□ -1.79
VPS4AQ9UN37 AL512360.1-201ENST00000555346 234 ntBASIC3.84□□□□□ -1.79
VPS4AQ9UN37 PCLAF-207ENST00000559519 749 ntTSL 2 BASIC3.84□□□□□ -1.79
VPS4AQ9UN37 AP005205.1-201ENST00000563503 508 ntBASIC3.84□□□□□ -1.79
VPS4AQ9UN37 AC025627.2-201ENST00000576220 160 ntBASIC3.84□□□□□ -1.79
VPS4AQ9UN37 AC006270.2-201ENST00000578523 652 ntBASIC3.84□□□□□ -1.79
VPS4AQ9UN37 MIR5684-201ENST00000585074 65 ntBASIC3.84□□□□□ -1.79
VPS4AQ9UN37 AC092636.1-201ENST00000608609 415 ntTSL 2 BASIC3.84□□□□□ -1.79
VPS4AQ9UN37 AC004067.1-201ENST00000608733 700 ntBASIC3.84□□□□□ -1.79
VPS4AQ9UN37 AL591424.2-201ENST00000617023 128 ntBASIC3.84□□□□□ -1.79
VPS4AQ9UN37 AC006338.1-201ENST00000618453 749 ntBASIC3.84□□□□□ -1.79
VPS4AQ9UN37 AL603758.1-201ENST00000618654 241 ntBASIC3.84□□□□□ -1.79
VPS4AQ9UN37 MIR6500-201ENST00000622700 86 ntBASIC3.84□□□□□ -1.79
VPS4AQ9UN37 MYSM1-203ENST00000472487 7785 ntAPPRIS P1 TSL 1 (best) BASIC3.84□□□□□ -1.79
VPS4AQ9UN37 AGTR2-201ENST00000371906 2882 ntAPPRIS P1 TSL 1 (best) BASIC3.84□□□□□ -1.8
VPS4AQ9UN37 CCDC178-205ENST00000406524 3039 ntAPPRIS ALT2 TSL 5 BASIC3.84□□□□□ -1.8
VPS4AQ9UN37 PAPPA-AS1-201ENST00000445861 2450 ntBASIC3.83□□□□□ -1.8
VPS4AQ9UN37 SMC1B-201ENST00000357450 4201 ntAPPRIS P1 TSL 5 BASIC3.83□□□□□ -1.8
VPS4AQ9UN37 LUM-201ENST00000266718 3008 ntAPPRIS P1 TSL 1 (best) BASIC3.83□□□□□ -1.8
VPS4AQ9UN37 CNTN6-201ENST00000350110 3814 ntAPPRIS P1 TSL 1 (best) BASIC3.83□□□□□ -1.8
VPS4AQ9UN37 Y_RNA.22-201ENST00000362492 102 ntBASIC3.83□□□□□ -1.8
VPS4AQ9UN37 RNU6-223P-201ENST00000362830 107 ntBASIC3.83□□□□□ -1.8
VPS4AQ9UN37 RNU6-1090P-201ENST00000364065 94 ntBASIC3.83□□□□□ -1.8
VPS4AQ9UN37 RNY1P12-201ENST00000364251 105 ntBASIC3.83□□□□□ -1.8
VPS4AQ9UN37 RNU6-1322P-201ENST00000364309 107 ntBASIC3.83□□□□□ -1.8
VPS4AQ9UN37 RNU6-534P-201ENST00000364877 106 ntBASIC3.83□□□□□ -1.8
VPS4AQ9UN37 Y_RNA.390-201ENST00000383932 102 ntBASIC3.83□□□□□ -1.8
VPS4AQ9UN37 RNU6-483P-201ENST00000384088 108 ntBASIC3.83□□□□□ -1.8
VPS4AQ9UN37 Y_RNA.453-201ENST00000384223 109 ntBASIC3.83□□□□□ -1.8
VPS4AQ9UN37 TRAV24-201ENST00000390453 343 ntAPPRIS P1 BASIC3.83□□□□□ -1.8
VPS4AQ9UN37 AL109755.1-201ENST00000401791 649 ntBASIC3.83□□□□□ -1.8
VPS4AQ9UN37 AC022028.1-201ENST00000412054 408 ntBASIC3.83□□□□□ -1.8
VPS4AQ9UN37 LINC01201-201ENST00000412420 294 ntTSL 3 BASIC3.83□□□□□ -1.8
VPS4AQ9UN37 AC104462.1-201ENST00000414565 447 ntTSL 2 BASIC3.83□□□□□ -1.8
VPS4AQ9UN37 AL137014.1-201ENST00000420490 1226 ntBASIC3.83□□□□□ -1.8
VPS4AQ9UN37 AL358472.1-201ENST00000431295 329 ntBASIC3.83□□□□□ -1.8
VPS4AQ9UN37 AL451129.1-201ENST00000437471 285 ntTSL 3 BASIC3.83□□□□□ -1.8
VPS4AQ9UN37 AC079781.2-201ENST00000446424 169 ntBASIC3.83□□□□□ -1.8
VPS4AQ9UN37 AL024497.2-201ENST00000457081 317 ntTSL 3 BASIC3.83□□□□□ -1.8
VPS4AQ9UN37 LINC01510-203ENST00000458082 626 ntTSL 3 BASIC3.83□□□□□ -1.8
VPS4AQ9UN37 AL034349.1-201ENST00000458367 549 ntTSL 5 BASIC3.83□□□□□ -1.8
VPS4AQ9UN37 SIDT1-AS1-201ENST00000462180 465 ntTSL 3 BASIC3.83□□□□□ -1.8
VPS4AQ9UN37 AC092989.1-201ENST00000481235 277 ntBASIC3.83□□□□□ -1.8
VPS4AQ9UN37 APOA2-210ENST00000491350 263 ntTSL 1 (best) BASIC3.83□□□□□ -1.8
VPS4AQ9UN37 ANKRD36B-207ENST00000497329 649 ntTSL 1 (best) BASIC3.83□□□□□ -1.8
VPS4AQ9UN37 AC097372.3-201ENST00000503593 522 ntTSL 3 BASIC3.83□□□□□ -1.8
VPS4AQ9UN37 LINC02377-202ENST00000505436 523 ntTSL 5 BASIC3.83□□□□□ -1.8
VPS4AQ9UN37 PARP8-211ENST00000505554 3825 ntTSL 5 BASIC3.83□□□□□ -1.8
VPS4AQ9UN37 PRDX4P1-201ENST00000507189 574 ntBASIC3.83□□□□□ -1.8
VPS4AQ9UN37 AC093689.1-201ENST00000514737 246 ntTSL 5 BASIC3.83□□□□□ -1.8
VPS4AQ9UN37 RNA5SP309-201ENST00000516670 106 ntBASIC3.83□□□□□ -1.8
VPS4AQ9UN37 AC011257.1-201ENST00000519048 281 ntTSL 3 BASIC3.83□□□□□ -1.8
VPS4AQ9UN37 AC100870.1-201ENST00000522035 505 ntBASIC3.83□□□□□ -1.8
VPS4AQ9UN37 DEUP1-203ENST00000527307 767 ntTSL 3 BASIC3.83□□□□□ -1.8
VPS4AQ9UN37 AC011979.2-201ENST00000527568 352 ntBASIC3.83□□□□□ -1.8
VPS4AQ9UN37 AC022968.1-201ENST00000567372 442 ntBASIC3.83□□□□□ -1.8
VPS4AQ9UN37 AC068135.2-201ENST00000569293 1028 ntBASIC3.83□□□□□ -1.8
VPS4AQ9UN37 AC116003.1-202ENST00000579386 501 ntTSL 3 BASIC3.83□□□□□ -1.8
VPS4AQ9UN37 RPL26-207ENST00000583011 524 ntAPPRIS P1 TSL 3 BASIC3.83□□□□□ -1.8
VPS4AQ9UN37 LINC01905-202ENST00000588139 459 ntTSL 3 BASIC3.83□□□□□ -1.8
VPS4AQ9UN37 GLUD1P4-201ENST00000590914 418 ntBASIC3.83□□□□□ -1.8
VPS4AQ9UN37 AP000907.4-201ENST00000604143 237 ntBASIC3.83□□□□□ -1.8
VPS4AQ9UN37 AC007179.3-201ENST00000604976 235 ntBASIC3.83□□□□□ -1.8
VPS4AQ9UN37 HMGN2P28-201ENST00000606102 262 ntBASIC3.83□□□□□ -1.8
VPS4AQ9UN37 C8orf59-212ENST00000615697 483 ntAPPRIS P1 TSL 2 BASIC3.83□□□□□ -1.8
Retrieved 100 of 98,524 protein–RNA pairs in 119.5 ms