Protein–RNA interactions for Protein: Q86TS7

LINC00643, Putative UPF0730 protein encoded by LINC00643, humanhuman

Predictions only

Length 51 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00643Q86TS7 CCDC82-202ENST00000423339 1878 ntAPPRIS P2 TSL 1 (best) BASIC0.85□□□□□ -2.27
LINC00643Q86TS7 AC002465.1-201ENST00000436097 349 ntTSL 2 BASIC0.85□□□□□ -2.27
LINC00643Q86TS7 AL353764.1-201ENST00000442072 474 ntTSL 2 BASIC0.85□□□□□ -2.27
LINC00643Q86TS7 MTND6P13-201ENST00000443510 523 ntBASIC0.85□□□□□ -2.27
LINC00643Q86TS7 RSL24D1P3-201ENST00000449255 495 ntBASIC0.85□□□□□ -2.27
LINC00643Q86TS7 AP000926.3-201ENST00000497201 299 ntBASIC0.85□□□□□ -2.27
LINC00643Q86TS7 RNF138P1-201ENST00000502765 546 ntBASIC0.85□□□□□ -2.27
LINC00643Q86TS7 SLC25A15P5-201ENST00000508033 253 ntBASIC0.85□□□□□ -2.27
LINC00643Q86TS7 AC104232.2-201ENST00000519680 769 ntTSL 5 BASIC0.85□□□□□ -2.27
LINC00643Q86TS7 AC008676.3-201ENST00000521237 435 ntBASIC0.85□□□□□ -2.27
LINC00643Q86TS7 AC114550.3-201ENST00000524073 579 ntTSL 4 BASIC0.85□□□□□ -2.27
LINC00643Q86TS7 AC004923.2-201ENST00000529649 369 ntBASIC0.85□□□□□ -2.27
LINC00643Q86TS7 CARD18-203ENST00000532895 422 ntTSL 2 BASIC0.85□□□□□ -2.27
LINC00643Q86TS7 GTF3AP2-201ENST00000557014 266 ntBASIC0.85□□□□□ -2.27
LINC00643Q86TS7 STARD13-AS-208ENST00000589472 859 ntTSL 5 BASIC0.85□□□□□ -2.27
LINC00643Q86TS7 VN1R90P-201ENST00000595717 726 ntBASIC0.85□□□□□ -2.27
LINC00643Q86TS7 AC004542.2-201ENST00000602847 546 ntTSL 3 BASIC0.85□□□□□ -2.27
LINC00643Q86TS7 AL162233.1-201ENST00000620014 944 ntBASIC0.85□□□□□ -2.27
LINC00643Q86TS7 AC039056.2-201ENST00000622261 511 ntBASIC0.85□□□□□ -2.27
LINC00643Q86TS7 AC025034.2-201ENST00000623264 286 ntBASIC0.85□□□□□ -2.27
LINC00643Q86TS7 AC010872.1-201ENST00000624225 675 ntBASIC0.85□□□□□ -2.27
LINC00643Q86TS7 LRIF1-203ENST00000494675 1912 ntAPPRIS ALT2 TSL 2 BASIC0.85□□□□□ -2.27
LINC00643Q86TS7 LRRC6-212ENST00000618342 1754 ntAPPRIS ALT1 TSL 5 BASIC0.85□□□□□ -2.27
LINC00643Q86TS7 PAPOLA-202ENST00000392990 2588 ntTSL 5 BASIC0.85□□□□□ -2.27
LINC00643Q86TS7 SMARCAD1-201ENST00000354268 4912 ntAPPRIS P3 TSL 1 (best) BASIC0.84□□□□□ -2.27
LINC00643Q86TS7 PLCZ1-209ENST00000539875 1398 ntTSL 1 (best) BASIC0.84□□□□□ -2.27
LINC00643Q86TS7 OR8K3-204ENST00000641689 2380 ntAPPRIS P1 BASIC0.84□□□□□ -2.27
LINC00643Q86TS7 AL356292.1-201ENST00000283110 373 ntBASIC0.84□□□□□ -2.27
LINC00643Q86TS7 OR5W2-201ENST00000344514 933 ntAPPRIS P1 BASIC0.84□□□□□ -2.27
LINC00643Q86TS7 STATH-202ENST00000381060 534 ntTSL 1 (best) BASIC0.84□□□□□ -2.27
LINC00643Q86TS7 RNU6-761P-201ENST00000384148 107 ntBASIC0.84□□□□□ -2.27
LINC00643Q86TS7 AL356421.1-201ENST00000403255 413 ntBASIC0.84□□□□□ -2.27
LINC00643Q86TS7 SNORA11B-201ENST00000408175 129 ntBASIC0.84□□□□□ -2.27
LINC00643Q86TS7 RNU2-2P-201ENST00000410396 191 ntBASIC0.84□□□□□ -2.27
LINC00643Q86TS7 AC069280.1-201ENST00000413094 439 ntTSL 3 BASIC0.84□□□□□ -2.27
LINC00643Q86TS7 AC099677.1-201ENST00000420575 175 ntBASIC0.84□□□□□ -2.27
LINC00643Q86TS7 AL161935.1-201ENST00000420945 421 ntTSL 3 BASIC0.84□□□□□ -2.27
LINC00643Q86TS7 AL162726.4-201ENST00000422010 673 ntTSL 5 BASIC0.84□□□□□ -2.27
LINC00643Q86TS7 LINC01683-201ENST00000443479 412 ntTSL 3 BASIC0.84□□□□□ -2.27
LINC00643Q86TS7 RPS29P28-201ENST00000446439 141 ntBASIC0.84□□□□□ -2.27
LINC00643Q86TS7 UBE2V2P4-201ENST00000447495 259 ntBASIC0.84□□□□□ -2.27
LINC00643Q86TS7 AL592161.1-201ENST00000456389 861 ntTSL 3 BASIC0.84□□□□□ -2.27
LINC00643Q86TS7 OR2A41P-201ENST00000473586 105 ntBASIC0.84□□□□□ -2.27
LINC00643Q86TS7 KATNBL1P4-201ENST00000503545 918 ntBASIC0.84□□□□□ -2.27
LINC00643Q86TS7 AC026780.1-201ENST00000512237 952 ntTSL 3 BASIC0.84□□□□□ -2.27
LINC00643Q86TS7 RN7SKP96-201ENST00000516948 297 ntBASIC0.84□□□□□ -2.27
LINC00643Q86TS7 AC021785.1-201ENST00000520780 453 ntTSL 3 BASIC0.84□□□□□ -2.27
LINC00643Q86TS7 AC108471.2-204ENST00000526807 784 ntTSL 5 BASIC0.84□□□□□ -2.27
LINC00643Q86TS7 AC022509.2-201ENST00000540392 699 ntTSL 3 BASIC0.84□□□□□ -2.27
LINC00643Q86TS7 DISC1FP1-202ENST00000562245 774 ntTSL 3 BASIC0.84□□□□□ -2.27
LINC00643Q86TS7 AC009097.3-201ENST00000563557 1018 ntBASIC0.84□□□□□ -2.27
LINC00643Q86TS7 AC009101.2-201ENST00000564293 456 ntTSL 3 BASIC0.84□□□□□ -2.27
LINC00643Q86TS7 AC026771.1-201ENST00000564672 415 ntTSL 2 BASIC0.84□□□□□ -2.27
LINC00643Q86TS7 AC068338.1-201ENST00000565567 176 ntBASIC0.84□□□□□ -2.27
LINC00643Q86TS7 AC022254.1-201ENST00000567857 235 ntBASIC0.84□□□□□ -2.27
LINC00643Q86TS7 AC068025.2-201ENST00000584958 419 ntTSL 5 BASIC0.84□□□□□ -2.27
LINC00643Q86TS7 AC125494.3-201ENST00000602759 455 ntBASIC0.84□□□□□ -2.27
LINC00643Q86TS7 AC245100.7-201ENST00000609678 442 ntBASIC0.84□□□□□ -2.27
LINC00643Q86TS7 U2.15-201ENST00000611544 191 ntBASIC0.84□□□□□ -2.27
LINC00643Q86TS7 U2.16-201ENST00000613119 191 ntBASIC0.84□□□□□ -2.27
LINC00643Q86TS7 U2.12-201ENST00000613778 191 ntBASIC0.84□□□□□ -2.27
LINC00643Q86TS7 U2.20-201ENST00000613956 192 ntBASIC0.84□□□□□ -2.27
LINC00643Q86TS7 U2.9-201ENST00000615427 191 ntBASIC0.84□□□□□ -2.27
LINC00643Q86TS7 U2.11-201ENST00000616345 191 ntBASIC0.84□□□□□ -2.27
LINC00643Q86TS7 U2.2-201ENST00000616535 191 ntBASIC0.84□□□□□ -2.27
LINC00643Q86TS7 U2.3-201ENST00000617785 191 ntBASIC0.84□□□□□ -2.27
LINC00643Q86TS7 U2.19-201ENST00000618602 191 ntBASIC0.84□□□□□ -2.27
LINC00643Q86TS7 RNU2-1-201ENST00000618664 191 ntBASIC0.84□□□□□ -2.27
LINC00643Q86TS7 U2.6-201ENST00000619225 191 ntBASIC0.84□□□□□ -2.27
LINC00643Q86TS7 U2.5-201ENST00000619465 191 ntBASIC0.84□□□□□ -2.27
LINC00643Q86TS7 U2.10-201ENST00000620268 191 ntBASIC0.84□□□□□ -2.27
LINC00643Q86TS7 HPVC1-201ENST00000629899 1198 ntBASIC0.84□□□□□ -2.27
LINC00643Q86TS7 JMJD1C-212ENST00000639129 7901 ntAPPRIS ALT2 TSL 5 BASIC0.84□□□□□ -2.28
LINC00643Q86TS7 KTN1-223ENST00000555573 1712 ntTSL 2 BASIC0.84□□□□□ -2.28
LINC00643Q86TS7 LINC01684-201ENST00000415182 2176 ntTSL 1 (best) BASIC0.83□□□□□ -2.28
LINC00643Q86TS7 UHRF1BP1L-203ENST00000545232 4088 ntTSL 1 (best) BASIC0.83□□□□□ -2.28
LINC00643Q86TS7 Z98749.2-208ENST00000381646 500 ntBASIC0.83□□□□□ -2.28
LINC00643Q86TS7 MIR9-3-201ENST00000385084 90 ntBASIC0.83□□□□□ -2.28
LINC00643Q86TS7 TRAV7-201ENST00000390429 337 ntAPPRIS P1 BASIC0.83□□□□□ -2.28
LINC00643Q86TS7 AL024474.1-201ENST00000404655 591 ntBASIC0.83□□□□□ -2.28
LINC00643Q86TS7 AC105402.1-201ENST00000413336 545 ntBASIC0.83□□□□□ -2.28
LINC00643Q86TS7 SNRPGP13-201ENST00000442212 177 ntBASIC0.83□□□□□ -2.28
LINC00643Q86TS7 AC024597.1-201ENST00000442753 706 ntTSL 5 BASIC0.83□□□□□ -2.28
LINC00643Q86TS7 HMGN1P5-201ENST00000448591 263 ntBASIC0.83□□□□□ -2.28
LINC00643Q86TS7 AC092666.1-201ENST00000492054 573 ntTSL 4 BASIC0.83□□□□□ -2.28
LINC00643Q86TS7 AC097462.2-201ENST00000504623 481 ntBASIC0.83□□□□□ -2.28
LINC00643Q86TS7 RNU6ATAC13P-201ENST00000516152 131 ntBASIC0.83□□□□□ -2.28
LINC00643Q86TS7 AP000873.2-205ENST00000529031 435 ntTSL 2 BASIC0.83□□□□□ -2.28
LINC00643Q86TS7 A2ML1-AS1-201ENST00000537288 452 ntTSL 3 BASIC0.83□□□□□ -2.28
LINC00643Q86TS7 AC010196.1-201ENST00000550014 450 ntTSL 5 BASIC0.83□□□□□ -2.28
LINC00643Q86TS7 AC027176.1-201ENST00000560204 514 ntBASIC0.83□□□□□ -2.28
LINC00643Q86TS7 AC007448.1-201ENST00000582714 234 ntBASIC0.83□□□□□ -2.28
LINC00643Q86TS7 U4atac.1-201ENST00000618345 95 ntBASIC0.83□□□□□ -2.28
LINC00643Q86TS7 MAGI2-AS3-224ENST00000619135 205 ntTSL 5 BASIC0.83□□□□□ -2.28
LINC00643Q86TS7 AC025539.1-201ENST00000515343 4019 ntTSL 2 BASIC0.83□□□□□ -2.28
LINC00643Q86TS7 ZNF280D-201ENST00000267807 4328 ntAPPRIS P3 TSL 1 (best) BASIC0.83□□□□□ -2.28
LINC00643Q86TS7 SLITRK6-201ENST00000400286 4318 ntAPPRIS P1 TSL 1 (best) BASIC0.83□□□□□ -2.28
LINC00643Q86TS7 AP000560.1-201ENST00000624150 1937 ntBASIC0.82□□□□□ -2.28
LINC00643Q86TS7 MIR517C-201ENST00000385103 95 ntBASIC0.82□□□□□ -2.28
LINC00643Q86TS7 RNA5SP212-201ENST00000391223 107 ntBASIC0.82□□□□□ -2.28
Retrieved 100 of 98,524 protein–RNA pairs in 128.4 ms