Protein–RNA interactions for Protein: Q68DE3

USF3, Basic helix-loop-helix domain-containing protein USF3, humanhuman

Predictions only

Length 2,245 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USF3Q68DE3 HMGB1P26-201ENST00000452520 628 ntBASIC1.19□□□□□ -2.22
USF3Q68DE3 RPL21P134-201ENST00000453468 483 ntBASIC1.19□□□□□ -2.22
USF3Q68DE3 RPL12P25-201ENST00000455592 494 ntBASIC1.19□□□□□ -2.22
USF3Q68DE3 HMGN2P13-201ENST00000476476 274 ntBASIC1.19□□□□□ -2.22
USF3Q68DE3 AC066612.2-201ENST00000559875 695 ntTSL 2 BASIC1.19□□□□□ -2.22
USF3Q68DE3 MIR151B-201ENST00000584249 96 ntBASIC1.19□□□□□ -2.22
USF3Q68DE3 SNORD84-203ENST00000584275 78 ntBASIC1.19□□□□□ -2.22
USF3Q68DE3 AC010976.1-210ENST00000630740 1005 ntTSL 5 BASIC1.19□□□□□ -2.22
USF3Q68DE3 AC138915.1-201ENST00000565427 1685 ntBASIC1.19□□□□□ -2.22
USF3Q68DE3 MDM2-203ENST00000299252 966 ntTSL 1 (best) BASIC1.19□□□□□ -2.22
USF3Q68DE3 MDM2-207ENST00000360430 891 ntTSL 1 (best) BASIC1.19□□□□□ -2.22
USF3Q68DE3 RNU6-1331P-201ENST00000363658 106 ntBASIC1.19□□□□□ -2.22
USF3Q68DE3 AC007098.1-201ENST00000420122 367 ntBASIC1.19□□□□□ -2.22
USF3Q68DE3 UBBP3-201ENST00000445497 241 ntBASIC1.19□□□□□ -2.22
USF3Q68DE3 AC007395.1-201ENST00000451333 677 ntBASIC1.19□□□□□ -2.22
USF3Q68DE3 RNU7-27P-201ENST00000459281 62 ntBASIC1.19□□□□□ -2.22
USF3Q68DE3 AC022039.1-201ENST00000527110 488 ntTSL 2 BASIC1.19□□□□□ -2.22
USF3Q68DE3 AP003033.1-201ENST00000527244 415 ntBASIC1.19□□□□□ -2.22
USF3Q68DE3 AC068205.1-204ENST00000532989 481 ntTSL 3 BASIC1.19□□□□□ -2.22
USF3Q68DE3 DIAPH2-AS1-203ENST00000542084 450 ntTSL 5 BASIC1.19□□□□□ -2.22
USF3Q68DE3 CLEC2D-214ENST00000543300 399 ntTSL 1 (best) BASIC1.19□□□□□ -2.22
USF3Q68DE3 CLEC2D-216ENST00000545918 288 ntTSL 1 (best) BASIC1.19□□□□□ -2.22
USF3Q68DE3 DNAJC8P1-201ENST00000554535 372 ntBASIC1.19□□□□□ -2.22
USF3Q68DE3 AC025580.2-205ENST00000559960 552 ntTSL 4 BASIC1.19□□□□□ -2.22
USF3Q68DE3 MIR3122-201ENST00000577243 73 ntBASIC1.19□□□□□ -2.22
USF3Q68DE3 MIR4285-201ENST00000581001 85 ntBASIC1.19□□□□□ -2.22
USF3Q68DE3 RBBP8-210ENST00000581687 617 ntTSL 2 BASIC1.19□□□□□ -2.22
USF3Q68DE3 AC009220.3-201ENST00000604318 586 ntBASIC1.19□□□□□ -2.22
USF3Q68DE3 AL161912.3-201ENST00000605404 628 ntBASIC1.19□□□□□ -2.22
USF3Q68DE3 STMN1P1-201ENST00000617809 440 ntBASIC1.19□□□□□ -2.22
USF3Q68DE3 MIR203B-201ENST00000636080 86 ntBASIC1.19□□□□□ -2.22
USF3Q68DE3 OR5T1-202ENST00000641665 1471 ntAPPRIS P1 BASIC1.18□□□□□ -2.22
USF3Q68DE3 AC103993.1-201ENST00000521500 1584 ntTSL 5 BASIC1.18□□□□□ -2.22
USF3Q68DE3 OR4G1P-203ENST00000641984 1631 ntBASIC1.18□□□□□ -2.22
USF3Q68DE3 RNU1-52P-201ENST00000384190 164 ntBASIC1.18□□□□□ -2.22
USF3Q68DE3 AC097717.1-233ENST00000413557 460 ntTSL 3 BASIC1.18□□□□□ -2.22
USF3Q68DE3 PGBD4P6-201ENST00000421501 610 ntBASIC1.18□□□□□ -2.22
USF3Q68DE3 AC090774.1-201ENST00000435925 246 ntBASIC1.18□□□□□ -2.22
USF3Q68DE3 AC244505.5-201ENST00000443639 207 ntBASIC1.18□□□□□ -2.22
USF3Q68DE3 AL627224.1-201ENST00000448334 444 ntBASIC1.18□□□□□ -2.22
USF3Q68DE3 AL139081.1-201ENST00000452207 382 ntTSL 3 BASIC1.18□□□□□ -2.22
USF3Q68DE3 LINC00374-201ENST00000454780 800 ntTSL 3 BASIC1.18□□□□□ -2.22
USF3Q68DE3 ZBTB20-AS2-201ENST00000478301 372 ntTSL 2 BASIC1.18□□□□□ -2.22
USF3Q68DE3 AC097521.1-201ENST00000505488 567 ntTSL 3 BASIC1.18□□□□□ -2.22
USF3Q68DE3 AC092542.1-201ENST00000513155 355 ntTSL 2 BASIC1.18□□□□□ -2.22
USF3Q68DE3 MIR449C-201ENST00000516047 92 ntBASIC1.18□□□□□ -2.22
USF3Q68DE3 SNORD59.2-201ENST00000516873 68 ntBASIC1.18□□□□□ -2.22
USF3Q68DE3 SETP7-201ENST00000552169 453 ntBASIC1.18□□□□□ -2.22
USF3Q68DE3 MIR5194-201ENST00000582634 120 ntBASIC1.18□□□□□ -2.22
USF3Q68DE3 AC005296.1-201ENST00000616145 209 ntBASIC1.18□□□□□ -2.22
USF3Q68DE3 AL133216.2-202ENST00000634512 349 ntBASIC1.18□□□□□ -2.22
USF3Q68DE3 AC011477.1-204ENST00000623416 1325 ntBASIC1.18□□□□□ -2.22
USF3Q68DE3 C1orf141-203ENST00000371007 2153 ntAPPRIS P3 TSL 5 BASIC1.18□□□□□ -2.22
USF3Q68DE3 AP001350.1-201ENST00000601906 1524 ntBASIC1.18□□□□□ -2.22
USF3Q68DE3 Y_RNA.205-201ENST00000364128 113 ntBASIC1.17□□□□□ -2.22
USF3Q68DE3 RFESDP1-201ENST00000422350 461 ntBASIC1.17□□□□□ -2.22
USF3Q68DE3 SDCBPP1-201ENST00000440192 890 ntBASIC1.17□□□□□ -2.22
USF3Q68DE3 AL390961.3-201ENST00000458171 485 ntTSL 5 BASIC1.17□□□□□ -2.22
USF3Q68DE3 HMGB1P38-201ENST00000490557 577 ntBASIC1.17□□□□□ -2.22
USF3Q68DE3 AC093767.1-201ENST00000504523 156 ntBASIC1.17□□□□□ -2.22
USF3Q68DE3 IGHVII-53-1-201ENST00000519538 255 ntBASIC1.17□□□□□ -2.22
USF3Q68DE3 SUB1P1-201ENST00000524415 382 ntBASIC1.17□□□□□ -2.22
USF3Q68DE3 AC068408.2-201ENST00000584566 439 ntTSL 3 BASIC1.17□□□□□ -2.22
USF3Q68DE3 AC140725.3-201ENST00000616193 880 ntBASIC1.17□□□□□ -2.22
USF3Q68DE3 ZNF461-214ENST00000618437 774 ntTSL 5 BASIC1.17□□□□□ -2.22
USF3Q68DE3 MIR4496-201ENST00000635896 61 ntBASIC1.17□□□□□ -2.22
USF3Q68DE3 SERPINI2-206ENST00000471111 1331 ntAPPRIS P1 TSL 1 (best) BASIC1.17□□□□□ -2.22
USF3Q68DE3 AC091534.1-201ENST00000548779 1751 ntTSL 2 BASIC1.17□□□□□ -2.22
USF3Q68DE3 AC135776.4-201ENST00000624300 1904 ntBASIC1.17□□□□□ -2.22
USF3Q68DE3 SNORA81-201ENST00000408493 178 ntBASIC1.17□□□□□ -2.22
USF3Q68DE3 RNU2-25P-201ENST00000411041 191 ntBASIC1.17□□□□□ -2.22
USF3Q68DE3 ATG12P2-201ENST00000456830 416 ntBASIC1.17□□□□□ -2.22
USF3Q68DE3 AC093801.2-201ENST00000503966 1050 ntBASIC1.17□□□□□ -2.22
USF3Q68DE3 AC084364.2-201ENST00000546924 395 ntBASIC1.17□□□□□ -2.22
USF3Q68DE3 AC009145.1-201ENST00000563230 433 ntTSL 3 BASIC1.17□□□□□ -2.22
USF3Q68DE3 AC079411.1-201ENST00000565441 795 ntTSL 1 (best) BASIC1.17□□□□□ -2.22
USF3Q68DE3 AC109446.2-201ENST00000567872 497 ntBASIC1.17□□□□□ -2.22
USF3Q68DE3 MTND4LP24-201ENST00000572277 291 ntBASIC1.17□□□□□ -2.22
USF3Q68DE3 AC013553.2-201ENST00000604244 589 ntBASIC1.17□□□□□ -2.22
USF3Q68DE3 AL138880.2-201ENST00000616214 239 ntBASIC1.17□□□□□ -2.22
USF3Q68DE3 RNU1-22P-201ENST00000363334 158 ntBASIC1.16□□□□□ -2.22
USF3Q68DE3 TRAJ31-201ENST00000390506 57 ntAPPRIS P1 BASIC1.16□□□□□ -2.22
USF3Q68DE3 MIR548J-201ENST00000408833 112 ntBASIC1.16□□□□□ -2.22
USF3Q68DE3 MTND4P11-201ENST00000417020 1058 ntBASIC1.16□□□□□ -2.22
USF3Q68DE3 UBE2FP3-201ENST00000436366 524 ntBASIC1.16□□□□□ -2.22
USF3Q68DE3 MTND2P8-201ENST00000450555 1025 ntBASIC1.16□□□□□ -2.22
USF3Q68DE3 AP002371.1-201ENST00000463604 433 ntBASIC1.16□□□□□ -2.22
USF3Q68DE3 RPS29P1-201ENST00000465274 159 ntBASIC1.16□□□□□ -2.22
USF3Q68DE3 AC020651.1-201ENST00000490324 360 ntTSL 3 BASIC1.16□□□□□ -2.22
USF3Q68DE3 KLHL6-AS1-201ENST00000491676 503 ntTSL 2 BASIC1.16□□□□□ -2.22
USF3Q68DE3 C5orf46-203ENST00000515291 573 ntAPPRIS ALT1 TSL 1 (best) BASIC1.16□□□□□ -2.22
USF3Q68DE3 RNU6-711P-201ENST00000517255 106 ntBASIC1.16□□□□□ -2.22
USF3Q68DE3 AC025423.2-201ENST00000537570 439 ntBASIC1.16□□□□□ -2.22
USF3Q68DE3 TRAV28-201ENST00000557548 323 ntBASIC1.16□□□□□ -2.22
USF3Q68DE3 GXYLT1P5-202ENST00000618830 589 ntTSL 5 BASIC1.16□□□□□ -2.22
USF3Q68DE3 AC010809.3-201ENST00000621310 641 ntBASIC1.16□□□□□ -2.22
USF3Q68DE3 AL161782.1-201ENST00000622930 586 ntTSL 3 BASIC1.16□□□□□ -2.22
USF3Q68DE3 MKKS-204ENST00000639674 192 ntBASIC1.16□□□□□ -2.22
USF3Q68DE3 FSIP2-206ENST00000611759 3882 ntAPPRIS ALT2 TSL 5 BASIC1.16□□□□□ -2.22
USF3Q68DE3 SNORA67.1-201ENST00000364749 141 ntBASIC1.16□□□□□ -2.22
Retrieved 100 of 98,524 protein–RNA pairs in 125.1 ms