Protein–RNA interactions for Protein: Q3KNS1

PTCHD3, Patched domain-containing protein 3, humanhuman

Predictions only

Length 767 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTCHD3Q3KNS1 AC110597.3-202ENST00000583493 3289 ntTSL 5 BASIC3.9□□□□□ -1.78
PTCHD3Q3KNS1 TUG1-201ENST00000519077 5673 ntTSL 1 (best) BASIC3.9□□□□□ -1.78
PTCHD3Q3KNS1 ZSCAN26-204ENST00000614088 2321 ntTSL 3 BASIC3.9□□□□□ -1.78
PTCHD3Q3KNS1 MGA-201ENST00000219905 12042 ntAPPRIS P4 TSL 5 BASIC3.9□□□□□ -1.78
PTCHD3Q3KNS1 CASC19-280ENST00000642102 1351 ntBASIC3.9□□□□□ -1.78
PTCHD3Q3KNS1 AC006020.1-201ENST00000420179 1854 ntBASIC3.9□□□□□ -1.78
PTCHD3Q3KNS1 ZNF682-207ENST00000595736 1710 ntTSL 2 BASIC3.9□□□□□ -1.78
PTCHD3Q3KNS1 ZFYVE16-201ENST00000338008 6773 ntAPPRIS P1 TSL 1 (best) BASIC3.9□□□□□ -1.78
PTCHD3Q3KNS1 FMN2-207ENST00000545751 1913 ntTSL 5 BASIC3.9□□□□□ -1.78
PTCHD3Q3KNS1 KIFAP3-202ENST00000367765 4111 ntTSL 2 BASIC3.9□□□□□ -1.78
PTCHD3Q3KNS1 UBE2D3-233ENST00000618836 3472 ntAPPRIS ALT1 TSL 5 BASIC3.9□□□□□ -1.79
PTCHD3Q3KNS1 LLPH-201ENST00000266604 7746 ntAPPRIS P1 TSL 1 (best) BASIC3.9□□□□□ -1.79
PTCHD3Q3KNS1 EDDM3A-201ENST00000326842 927 ntAPPRIS P1 TSL 1 (best) BASIC3.9□□□□□ -1.79
PTCHD3Q3KNS1 OR5AK2-201ENST00000326855 996 ntAPPRIS P1 BASIC3.9□□□□□ -1.79
PTCHD3Q3KNS1 RNU6-451P-201ENST00000362921 107 ntBASIC3.9□□□□□ -1.79
PTCHD3Q3KNS1 RNU6-335P-201ENST00000364563 113 ntBASIC3.9□□□□□ -1.79
PTCHD3Q3KNS1 Y_RNA.255-201ENST00000364581 97 ntBASIC3.9□□□□□ -1.79
PTCHD3Q3KNS1 AL359634.1-202ENST00000404721 284 ntBASIC3.9□□□□□ -1.79
PTCHD3Q3KNS1 AL445189.1-201ENST00000405722 338 ntBASIC3.9□□□□□ -1.79
PTCHD3Q3KNS1 MIR1251-201ENST00000408552 70 ntBASIC3.9□□□□□ -1.79
PTCHD3Q3KNS1 EI24P1-201ENST00000416584 867 ntBASIC3.9□□□□□ -1.79
PTCHD3Q3KNS1 RPL30P16-201ENST00000419341 429 ntBASIC3.9□□□□□ -1.79
PTCHD3Q3KNS1 AC078993.1-203ENST00000435789 1037 ntTSL 5 BASIC3.9□□□□□ -1.79
PTCHD3Q3KNS1 AL451129.1-201ENST00000437471 285 ntTSL 3 BASIC3.9□□□□□ -1.79
PTCHD3Q3KNS1 AL591721.1-201ENST00000439849 751 ntTSL 3 BASIC3.9□□□□□ -1.79
PTCHD3Q3KNS1 AC092755.1-201ENST00000441746 97 ntTSL 3 BASIC3.9□□□□□ -1.79
PTCHD3Q3KNS1 MTND5P20-201ENST00000448677 143 ntBASIC3.9□□□□□ -1.79
PTCHD3Q3KNS1 MYCBP2-AS1-203ENST00000450627 349 ntTSL 3 BASIC3.9□□□□□ -1.79
PTCHD3Q3KNS1 GAS5-223ENST00000452197 483 ntTSL 3 BASIC3.9□□□□□ -1.79
PTCHD3Q3KNS1 AC008481.1-201ENST00000463278 396 ntBASIC3.9□□□□□ -1.79
PTCHD3Q3KNS1 NREP-AS1-201ENST00000503242 411 ntTSL 3 BASIC3.9□□□□□ -1.79
PTCHD3Q3KNS1 AC098587.1-201ENST00000508241 540 ntTSL 4 BASIC3.9□□□□□ -1.79
PTCHD3Q3KNS1 PCBP2P3-201ENST00000509726 843 ntBASIC3.9□□□□□ -1.79
PTCHD3Q3KNS1 AC097375.2-201ENST00000510416 579 ntTSL 5 BASIC3.9□□□□□ -1.79
PTCHD3Q3KNS1 AC010451.3-201ENST00000511721 444 ntTSL 3 BASIC3.9□□□□□ -1.79
PTCHD3Q3KNS1 LINC02315-201ENST00000515218 696 ntTSL 5 BASIC3.9□□□□□ -1.79
PTCHD3Q3KNS1 SNORD60.2-201ENST00000516883 86 ntBASIC3.9□□□□□ -1.79
PTCHD3Q3KNS1 RNU6-1092P-201ENST00000516955 87 ntBASIC3.9□□□□□ -1.79
PTCHD3Q3KNS1 AC109466.1-211ENST00000519327 496 ntTSL 3 BASIC3.9□□□□□ -1.79
PTCHD3Q3KNS1 AP004371.1-201ENST00000525240 214 ntBASIC3.9□□□□□ -1.79
PTCHD3Q3KNS1 PIGY-201ENST00000527353 217 ntAPPRIS P1 BASIC3.9□□□□□ -1.79
PTCHD3Q3KNS1 AP001646.1-201ENST00000527936 915 ntBASIC3.9□□□□□ -1.79
PTCHD3Q3KNS1 MRPL51-203ENST00000538814 501 ntTSL 2 BASIC3.9□□□□□ -1.79
PTCHD3Q3KNS1 MRPL51-207ENST00000543959 472 ntTSL 3 BASIC3.9□□□□□ -1.79
PTCHD3Q3KNS1 AC125611.2-201ENST00000551907 647 ntBASIC3.9□□□□□ -1.79
PTCHD3Q3KNS1 LINC02301-203ENST00000555798 789 ntTSL 3 BASIC3.9□□□□□ -1.79
PTCHD3Q3KNS1 NCAPGP2-201ENST00000557911 754 ntBASIC3.9□□□□□ -1.79
PTCHD3Q3KNS1 AC053481.4-201ENST00000583164 216 ntBASIC3.9□□□□□ -1.79
PTCHD3Q3KNS1 AC093227.2-201ENST00000589357 285 ntBASIC3.9□□□□□ -1.79
PTCHD3Q3KNS1 RPS4XP16-203ENST00000596904 698 ntTSL 5 BASIC3.9□□□□□ -1.79
PTCHD3Q3KNS1 AL670379.6-201ENST00000603753 252 ntBASIC3.9□□□□□ -1.79
PTCHD3Q3KNS1 AL670379.11-201ENST00000604059 253 ntBASIC3.9□□□□□ -1.79
PTCHD3Q3KNS1 AC008162.1-201ENST00000604718 254 ntBASIC3.9□□□□□ -1.79
PTCHD3Q3KNS1 AL670379.1-201ENST00000604752 252 ntBASIC3.9□□□□□ -1.79
PTCHD3Q3KNS1 AL670379.5-201ENST00000605253 252 ntBASIC3.9□□□□□ -1.79
PTCHD3Q3KNS1 AL670379.12-201ENST00000605291 253 ntBASIC3.9□□□□□ -1.79
PTCHD3Q3KNS1 AL670379.8-201ENST00000605353 252 ntBASIC3.9□□□□□ -1.79
PTCHD3Q3KNS1 AL670379.7-201ENST00000605823 252 ntBASIC3.9□□□□□ -1.79
PTCHD3Q3KNS1 AL121992.2-201ENST00000606262 256 ntBASIC3.9□□□□□ -1.79
PTCHD3Q3KNS1 AC128687.2-201ENST00000609657 566 ntBASIC3.9□□□□□ -1.79
PTCHD3Q3KNS1 MIR6868-201ENST00000611215 58 ntBASIC3.9□□□□□ -1.79
PTCHD3Q3KNS1 AL354950.2-201ENST00000617939 290 ntBASIC3.9□□□□□ -1.79
PTCHD3Q3KNS1 AC233309.1-201ENST00000619522 751 ntBASIC3.9□□□□□ -1.79
PTCHD3Q3KNS1 AC015967.1-201ENST00000619893 476 ntBASIC3.9□□□□□ -1.79
PTCHD3Q3KNS1 PTP4A2-219ENST00000626355 606 ntTSL 5 BASIC3.9□□□□□ -1.79
PTCHD3Q3KNS1 LIG4-201ENST00000356922 4096 ntAPPRIS P1 TSL 1 (best) BASIC3.9□□□□□ -1.79
PTCHD3Q3KNS1 C18orf54-202ENST00000382911 4056 ntTSL 5 BASIC3.9□□□□□ -1.79
PTCHD3Q3KNS1 EPC1-203ENST00000375110 3909 ntTSL 1 (best) BASIC3.9□□□□□ -1.79
PTCHD3Q3KNS1 SKIL-201ENST00000259119 3057 ntAPPRIS P1 TSL 1 (best) BASIC3.9□□□□□ -1.79
PTCHD3Q3KNS1 EIF2AK2-204ENST00000405334 1533 ntTSL 1 (best) BASIC3.9□□□□□ -1.79
PTCHD3Q3KNS1 TFPI-201ENST00000233156 3885 ntAPPRIS P1 TSL 1 (best) BASIC3.9□□□□□ -1.79
PTCHD3Q3KNS1 GABPAP-201ENST00000419271 1356 ntBASIC3.89□□□□□ -1.79
PTCHD3Q3KNS1 BDP1P-201ENST00000582658 1990 ntBASIC3.89□□□□□ -1.79
PTCHD3Q3KNS1 CYP3A7-CYP3A51P-201ENST00000611620 1608 ntTSL 5 BASIC3.89□□□□□ -1.79
PTCHD3Q3KNS1 IFI16-208ENST00000448393 2245 ntAPPRIS ALT2 TSL 5 BASIC3.89□□□□□ -1.79
PTCHD3Q3KNS1 STXBP4-201ENST00000376352 15590 ntAPPRIS P1 TSL 2 BASIC3.89□□□□□ -1.79
PTCHD3Q3KNS1 SNORA23-201ENST00000365128 182 ntBASIC3.89□□□□□ -1.79
PTCHD3Q3KNS1 RNU6-1074P-201ENST00000383995 104 ntBASIC3.89□□□□□ -1.79
PTCHD3Q3KNS1 RNU6-629P-201ENST00000384061 103 ntBASIC3.89□□□□□ -1.79
PTCHD3Q3KNS1 AC110754.1-201ENST00000399740 601 ntBASIC3.89□□□□□ -1.79
PTCHD3Q3KNS1 RPS3AP24-201ENST00000407896 734 ntBASIC3.89□□□□□ -1.79
PTCHD3Q3KNS1 RNU6-373P-201ENST00000411247 98 ntBASIC3.89□□□□□ -1.79
PTCHD3Q3KNS1 SSXP9-201ENST00000417503 292 ntBASIC3.89□□□□□ -1.79
PTCHD3Q3KNS1 AC016710.1-201ENST00000421326 466 ntTSL 3 BASIC3.89□□□□□ -1.79
PTCHD3Q3KNS1 LINC00368-201ENST00000422994 650 ntTSL 1 (best) BASIC3.89□□□□□ -1.79
PTCHD3Q3KNS1 MTCO1P39-201ENST00000426148 480 ntBASIC3.89□□□□□ -1.79
PTCHD3Q3KNS1 AC093581.1-202ENST00000430890 391 ntTSL 2 BASIC3.89□□□□□ -1.79
PTCHD3Q3KNS1 AC011742.1-201ENST00000431448 434 ntBASIC3.89□□□□□ -1.79
PTCHD3Q3KNS1 AC007099.2-201ENST00000444852 336 ntTSL 5 BASIC3.89□□□□□ -1.79
PTCHD3Q3KNS1 MTUS2-AS2-203ENST00000452602 651 ntTSL 3 BASIC3.89□□□□□ -1.79
PTCHD3Q3KNS1 AC005062.1-201ENST00000457921 566 ntTSL 3 BASIC3.89□□□□□ -1.79
PTCHD3Q3KNS1 RNU7-182P-201ENST00000459009 62 ntBASIC3.89□□□□□ -1.79
PTCHD3Q3KNS1 RNU4ATAC6P-201ENST00000516592 126 ntBASIC3.89□□□□□ -1.79
PTCHD3Q3KNS1 AP000462.2-203ENST00000540545 715 ntTSL 5 BASIC3.89□□□□□ -1.79
PTCHD3Q3KNS1 AC093012.1-202ENST00000549403 582 ntBASIC3.89□□□□□ -1.79
PTCHD3Q3KNS1 AC034105.4-201ENST00000568304 277 ntBASIC3.89□□□□□ -1.79
PTCHD3Q3KNS1 RN7SL703P-201ENST00000578485 302 ntBASIC3.89□□□□□ -1.79
PTCHD3Q3KNS1 MIR4775-201ENST00000581168 75 ntBASIC3.89□□□□□ -1.79
PTCHD3Q3KNS1 RPL26-207ENST00000583011 524 ntAPPRIS P1 TSL 3 BASIC3.89□□□□□ -1.79
PTCHD3Q3KNS1 AC002115.1-201ENST00000589603 568 ntTSL 4 BASIC3.89□□□□□ -1.79
Retrieved 100 of 98,524 protein–RNA pairs in 121.3 ms