Protein–RNA interactions for Protein: P49639

HOXA1, Homeobox protein Hox-A1, humanhuman

Predicted RBP Predictions only

Length 335 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXA1P49639 RPS3A-208ENST00000509736 576 ntTSL 2 BASIC3.17□□□□□ -1.9
HOXA1P49639 AP003469.3-201ENST00000518090 473 ntTSL 3 BASIC3.17□□□□□ -1.9
HOXA1P49639 NDST1-AS1-201ENST00000519040 368 ntTSL 2 BASIC3.17□□□□□ -1.9
HOXA1P49639 AC011257.1-201ENST00000519048 281 ntTSL 3 BASIC3.17□□□□□ -1.9
HOXA1P49639 AC024681.2-201ENST00000523525 204 ntTSL 5 BASIC3.17□□□□□ -1.9
HOXA1P49639 OR5AQ1P-201ENST00000527596 927 ntBASIC3.17□□□□□ -1.9
HOXA1P49639 AC009643.1-201ENST00000532030 391 ntBASIC3.17□□□□□ -1.9
HOXA1P49639 AC055720.1-201ENST00000539552 475 ntTSL 5 BASIC3.17□□□□□ -1.9
HOXA1P49639 MGST1-215ENST00000540056 546 ntTSL 3 BASIC3.17□□□□□ -1.9
HOXA1P49639 AC123904.3-201ENST00000547218 814 ntBASIC3.17□□□□□ -1.9
HOXA1P49639 AC008083.1-201ENST00000547748 663 ntTSL 2 BASIC3.17□□□□□ -1.9
HOXA1P49639 AC090531.1-202ENST00000548450 499 ntTSL 3 BASIC3.17□□□□□ -1.9
HOXA1P49639 AL512360.1-201ENST00000555346 234 ntBASIC3.17□□□□□ -1.9
HOXA1P49639 AL352955.1-201ENST00000555490 332 ntTSL 3 BASIC3.17□□□□□ -1.9
HOXA1P49639 TGIF1P1-201ENST00000558095 802 ntBASIC3.17□□□□□ -1.9
HOXA1P49639 HMGB1P33-201ENST00000563485 527 ntBASIC3.17□□□□□ -1.9
HOXA1P49639 AC008741.1-201ENST00000569456 510 ntTSL 3 BASIC3.17□□□□□ -1.9
HOXA1P49639 AC011824.2-201ENST00000579896 579 ntTSL 4 BASIC3.17□□□□□ -1.9
HOXA1P49639 AC104365.1-201ENST00000588835 394 ntTSL 5 BASIC3.17□□□□□ -1.9
HOXA1P49639 AC019176.2-201ENST00000611579 315 ntBASIC3.17□□□□□ -1.9
HOXA1P49639 AL603758.1-201ENST00000618654 241 ntBASIC3.17□□□□□ -1.9
HOXA1P49639 AC092683.2-203ENST00000618807 788 ntTSL 5 BASIC3.17□□□□□ -1.9
HOXA1P49639 AC015967.1-201ENST00000619893 476 ntBASIC3.17□□□□□ -1.9
HOXA1P49639 AC073534.2-201ENST00000620377 381 ntBASIC3.17□□□□□ -1.9
HOXA1P49639 USP33-201ENST00000357428 4155 ntTSL 5 BASIC3.17□□□□□ -1.9
HOXA1P49639 CR848007.1-201ENST00000442354 1699 ntBASIC3.17□□□□□ -1.9
HOXA1P49639 FAM91A3P-201ENST00000456826 2544 ntBASIC3.17□□□□□ -1.9
HOXA1P49639 TAX1BP1-213ENST00000543117 3365 ntAPPRIS ALT2 TSL 2 BASIC3.17□□□□□ -1.9
HOXA1P49639 FLG-AS1-205ENST00000445097 2857 ntTSL 1 (best) BASIC3.16□□□□□ -1.9
HOXA1P49639 TTN-204ENST00000360870 18218 ntTSL 5 BASIC3.16□□□□□ -1.9
HOXA1P49639 SNORA31-201ENST00000362607 130 ntBASIC3.16□□□□□ -1.9
HOXA1P49639 RNU6-511P-201ENST00000363496 107 ntBASIC3.16□□□□□ -1.9
HOXA1P49639 RNU6-188P-201ENST00000364207 107 ntBASIC3.16□□□□□ -1.9
HOXA1P49639 RNY1P12-201ENST00000364251 105 ntBASIC3.16□□□□□ -1.9
HOXA1P49639 RNU6-335P-201ENST00000364563 113 ntBASIC3.16□□□□□ -1.9
HOXA1P49639 MAPK8-202ENST00000374174 739 ntTSL 3 BASIC3.16□□□□□ -1.9
HOXA1P49639 AKR1C1-201ENST00000380859 858 ntTSL 3 BASIC3.16□□□□□ -1.9
HOXA1P49639 LY6G5C-210ENST00000383237 674 ntAPPRIS P2 TSL 1 (best) BASIC3.16□□□□□ -1.9
HOXA1P49639 Y_RNA.390-201ENST00000383932 102 ntBASIC3.16□□□□□ -1.9
HOXA1P49639 MIR585-201ENST00000384887 94 ntBASIC3.16□□□□□ -1.9
HOXA1P49639 FGFR1OP2P1-201ENST00000395943 500 ntBASIC3.16□□□□□ -1.9
HOXA1P49639 HLFP1-201ENST00000402375 499 ntBASIC3.16□□□□□ -1.9
HOXA1P49639 AL591416.1-201ENST00000404015 867 ntBASIC3.16□□□□□ -1.9
HOXA1P49639 RPS7P15-201ENST00000415804 584 ntBASIC3.16□□□□□ -1.9
HOXA1P49639 CCDC58P2-201ENST00000417131 366 ntBASIC3.16□□□□□ -1.9
HOXA1P49639 MTATP6P18-201ENST00000417994 673 ntBASIC3.16□□□□□ -1.9
HOXA1P49639 AC099677.1-201ENST00000420575 175 ntBASIC3.16□□□□□ -1.9
HOXA1P49639 AC018630.2-202ENST00000422992 927 ntBASIC3.16□□□□□ -1.9
HOXA1P49639 LINC01037-201ENST00000427337 424 ntTSL 5 BASIC3.16□□□□□ -1.9
HOXA1P49639 AC093581.1-202ENST00000430890 391 ntTSL 2 BASIC3.16□□□□□ -1.9
HOXA1P49639 LINC01626-201ENST00000431997 452 ntTSL 3 BASIC3.16□□□□□ -1.9
HOXA1P49639 AL080313.1-201ENST00000434947 405 ntTSL 2 BASIC3.16□□□□□ -1.9
HOXA1P49639 AC122718.1-201ENST00000439448 744 ntBASIC3.16□□□□□ -1.9
HOXA1P49639 AL591721.1-201ENST00000439849 751 ntTSL 3 BASIC3.16□□□□□ -1.9
HOXA1P49639 BNIP3P2-201ENST00000441221 577 ntBASIC3.16□□□□□ -1.9
HOXA1P49639 RNU6-420P-201ENST00000458780 107 ntBASIC3.16□□□□□ -1.9
HOXA1P49639 U3.44-201ENST00000458938 192 ntBASIC3.16□□□□□ -1.9
HOXA1P49639 FAM133DP-201ENST00000464802 691 ntBASIC3.16□□□□□ -1.9
HOXA1P49639 MTCO2P29-201ENST00000465212 189 ntBASIC3.16□□□□□ -1.9
HOXA1P49639 AC011276.1-201ENST00000469688 323 ntBASIC3.16□□□□□ -1.9
HOXA1P49639 MCCC1-AS1-201ENST00000471731 765 ntTSL 5 BASIC3.16□□□□□ -1.9
HOXA1P49639 AC023598.1-201ENST00000472521 361 ntBASIC3.16□□□□□ -1.9
HOXA1P49639 AC041039.1-201ENST00000485656 536 ntBASIC3.16□□□□□ -1.9
HOXA1P49639 RPL7P23-201ENST00000493874 747 ntBASIC3.16□□□□□ -1.9
HOXA1P49639 LINC02315-201ENST00000515218 696 ntTSL 5 BASIC3.16□□□□□ -1.9
HOXA1P49639 RNA5SP385-201ENST00000515947 110 ntBASIC3.16□□□□□ -1.9
HOXA1P49639 AC145141.2-201ENST00000518473 501 ntTSL 3 BASIC3.16□□□□□ -1.9
HOXA1P49639 HMGB1P41-201ENST00000520234 440 ntBASIC3.16□□□□□ -1.9
HOXA1P49639 FAM60DP-201ENST00000524174 632 ntBASIC3.16□□□□□ -1.9
HOXA1P49639 MTCYBP41-201ENST00000528913 1123 ntBASIC3.16□□□□□ -1.9
HOXA1P49639 RPS3AP4-201ENST00000555161 764 ntBASIC3.16□□□□□ -1.9
HOXA1P49639 AC090616.5-202ENST00000582111 297 ntBASIC3.16□□□□□ -1.9
HOXA1P49639 MIR4506-201ENST00000584693 77 ntBASIC3.16□□□□□ -1.9
HOXA1P49639 AC098848.2-201ENST00000588023 330 ntBASIC3.16□□□□□ -1.9
HOXA1P49639 AC098848.1-201ENST00000588466 567 ntTSL 4 BASIC3.16□□□□□ -1.9
HOXA1P49639 AC012507.3-201ENST00000603556 477 ntBASIC3.16□□□□□ -1.9
HOXA1P49639 AC008277.2-201ENST00000605196 797 ntBASIC3.16□□□□□ -1.9
HOXA1P49639 DCAF17-212ENST00000611110 975 ntTSL 1 (best) BASIC3.16□□□□□ -1.9
HOXA1P49639 C8orf59-209ENST00000612977 586 ntAPPRIS P1 TSL 2 BASIC3.16□□□□□ -1.9
HOXA1P49639 BX664730.1-201ENST00000616196 800 ntTSL 5 BASIC3.16□□□□□ -1.9
HOXA1P49639 MIR7151-201ENST00000617477 60 ntBASIC3.16□□□□□ -1.9
HOXA1P49639 AC010722.1-201ENST00000622595 582 ntTSL 5 BASIC3.16□□□□□ -1.9
HOXA1P49639 AP000346.3-201ENST00000622821 210 ntBASIC3.16□□□□□ -1.9
HOXA1P49639 MIR7641-1-201ENST00000627518 61 ntBASIC3.16□□□□□ -1.9
HOXA1P49639 LINC01090-203ENST00000632331 466 ntTSL 5 BASIC3.16□□□□□ -1.9
HOXA1P49639 ABBA01000935.2-201ENST00000637477 838 ntBASIC3.16□□□□□ -1.9
HOXA1P49639 ATXN3L-201ENST00000380622 2164 ntAPPRIS P1 BASIC3.16□□□□□ -1.9
HOXA1P49639 AC020637.1-201ENST00000546977 1447 ntTSL 5 BASIC3.16□□□□□ -1.9
HOXA1P49639 FAM35CP-201ENST00000554755 2470 ntBASIC3.16□□□□□ -1.9
HOXA1P49639 MBNL1-223ENST00000498502 5258 ntTSL 5 BASIC3.16□□□□□ -1.9
HOXA1P49639 LARP1BP1-201ENST00000506036 1359 ntBASIC3.15□□□□□ -1.9
HOXA1P49639 SUGT1-201ENST00000310528 14131 ntAPPRIS P3 TSL 1 (best) BASIC3.15□□□□□ -1.9
HOXA1P49639 ZNF266-204ENST00000590306 3317 ntAPPRIS P1 TSL 1 (best) BASIC3.15□□□□□ -1.9
HOXA1P49639 ABCA5-208ENST00000588877 6525 ntAPPRIS P1 TSL 1 (best) BASIC3.15□□□□□ -1.9
HOXA1P49639 AC139713.2-214ENST00000642059 1811 ntBASIC3.15□□□□□ -1.91
HOXA1P49639 LIG4-201ENST00000356922 4096 ntAPPRIS P1 TSL 1 (best) BASIC3.15□□□□□ -1.91
HOXA1P49639 SLC5A3-201ENST00000381151 11576 ntAPPRIS P1 TSL 1 (best) BASIC3.15□□□□□ -1.91
HOXA1P49639 Y_RNA.9-201ENST00000362354 101 ntBASIC3.15□□□□□ -1.91
HOXA1P49639 RNU6-1085P-201ENST00000363576 107 ntBASIC3.15□□□□□ -1.91
HOXA1P49639 RNA5SP366-201ENST00000365454 123 ntBASIC3.15□□□□□ -1.91
Retrieved 100 of 98,524 protein–RNA pairs in 92.7 ms