Protein–RNA interactions for Protein: P22670

RFX1, MHC class II regulatory factor RFX1, humanhuman

Predictions only

Length 979 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RFX1P22670 CNTN6-205ENST00000446702 4513 ntAPPRIS P1 TSL 1 (best) BASIC5.6□□□□□ -1.51
RFX1P22670 FAR2-203ENST00000547116 1787 ntTSL 2 BASIC5.6□□□□□ -1.51
RFX1P22670 HDAC9-204ENST00000406451 9705 ntAPPRIS ALT1 TSL 1 (best) BASIC5.6□□□□□ -1.51
RFX1P22670 IREB2-201ENST00000258886 6354 ntAPPRIS P1 TSL 1 (best) BASIC5.59□□□□□ -1.51
RFX1P22670 AC116096.1-201ENST00000566804 2314 ntBASIC5.59□□□□□ -1.51
RFX1P22670 LCLAT1-203ENST00000379509 4888 ntAPPRIS P1 TSL 1 (best) BASIC5.59□□□□□ -1.51
RFX1P22670 LINC00504-201ENST00000505089 4672 ntTSL 2 BASIC5.59□□□□□ -1.51
RFX1P22670 Y_RNA.496-201ENST00000384444 101 ntBASIC5.59□□□□□ -1.51
RFX1P22670 MIR1290-201ENST00000408735 78 ntBASIC5.59□□□□□ -1.51
RFX1P22670 LINC01737-201ENST00000412647 403 ntTSL 1 (best) BASIC5.59□□□□□ -1.51
RFX1P22670 ELF3-AS1-201ENST00000415582 500 ntTSL 2 BASIC5.59□□□□□ -1.51
RFX1P22670 NDUFB4P7-201ENST00000423198 363 ntBASIC5.59□□□□□ -1.51
RFX1P22670 AL592045.1-201ENST00000429867 352 ntBASIC5.59□□□□□ -1.51
RFX1P22670 AC012070.1-201ENST00000442062 427 ntTSL 3 BASIC5.59□□□□□ -1.51
RFX1P22670 AC245028.2-201ENST00000458673 253 ntBASIC5.59□□□□□ -1.51
RFX1P22670 C10orf128-207ENST00000474718 614 ntAPPRIS P3 TSL 1 (best) BASIC5.59□□□□□ -1.51
RFX1P22670 LINC02377-201ENST00000500169 450 ntTSL 3 BASIC5.59□□□□□ -1.51
RFX1P22670 HHIP-AS1-203ENST00000512359 646 ntTSL 3 BASIC5.59□□□□□ -1.51
RFX1P22670 MAL2-206ENST00000522187 547 ntTSL 4 BASIC5.59□□□□□ -1.51
RFX1P22670 AC011487.3-201ENST00000593607 453 ntBASIC5.59□□□□□ -1.51
RFX1P22670 ELOCP5-201ENST00000604924 333 ntBASIC5.59□□□□□ -1.51
RFX1P22670 RNU6-85P-201ENST00000605989 107 ntBASIC5.59□□□□□ -1.51
RFX1P22670 BX005214.3-202ENST00000619809 325 ntBASIC5.59□□□□□ -1.51
RFX1P22670 AL162373.1-201ENST00000620433 407 ntBASIC5.59□□□□□ -1.51
RFX1P22670 AC091905.4-201ENST00000623432 202 ntBASIC5.59□□□□□ -1.51
RFX1P22670 AL512643.1-201ENST00000635735 524 ntBASIC5.59□□□□□ -1.51
RFX1P22670 CASP1-217ENST00000640184 327 ntTSL 1 (best) BASIC5.59□□□□□ -1.51
RFX1P22670 ATF7IP-209ENST00000536444 8774 ntAPPRIS ALT2 TSL 1 (best) BASIC5.59□□□□□ -1.51
RFX1P22670 USP8-202ENST00000396444 19026 ntAPPRIS P1 TSL 1 (best) BASIC5.59□□□□□ -1.51
RFX1P22670 SNX10-209ENST00000619420 2361 ntAPPRIS ALT1 TSL 5 BASIC5.59□□□□□ -1.51
RFX1P22670 RNMT-209ENST00000592764 4108 ntTSL 2 BASIC5.59□□□□□ -1.51
RFX1P22670 PSG7-202ENST00000446844 2227 ntAPPRIS P5 TSL 5 BASIC5.59□□□□□ -1.52
RFX1P22670 PAPOLA-202ENST00000392990 2588 ntTSL 5 BASIC5.59□□□□□ -1.52
RFX1P22670 ERI2-202ENST00000357967 3499 ntAPPRIS P1 TSL 5 BASIC5.58□□□□□ -1.52
RFX1P22670 CCNT1-205ENST00000618666 6915 ntTSL 2 BASIC5.58□□□□□ -1.52
RFX1P22670 AP000542.2-201ENST00000623199 6179 ntBASIC5.58□□□□□ -1.52
RFX1P22670 XKR4-201ENST00000327381 19880 ntAPPRIS P1 TSL 1 (best) BASIC5.58□□□□□ -1.52
RFX1P22670 DNAH6-202ENST00000389394 12795 ntAPPRIS P1 TSL 5 BASIC5.58□□□□□ -1.52
RFX1P22670 BBX-206ENST00000415149 8930 ntAPPRIS P3 TSL 1 (best) BASIC5.58□□□□□ -1.52
RFX1P22670 OR4G2P-202ENST00000641004 1759 ntBASIC5.58□□□□□ -1.52
RFX1P22670 AC118758.3-201ENST00000624628 24137 ntTSL 5 BASIC5.58□□□□□ -1.52
RFX1P22670 ARHGEF6-203ENST00000370622 4779 ntTSL 1 (best) BASIC5.58□□□□□ -1.52
RFX1P22670 Y_RNA.80-201ENST00000362996 102 ntBASIC5.58□□□□□ -1.52
RFX1P22670 RNU1-115P-201ENST00000365329 160 ntBASIC5.58□□□□□ -1.52
RFX1P22670 RNU6-395P-201ENST00000365662 106 ntBASIC5.58□□□□□ -1.52
RFX1P22670 RPL31-205ENST00000409320 716 ntAPPRIS ALT1 TSL 1 (best) BASIC5.58□□□□□ -1.52
RFX1P22670 AL592078.1-201ENST00000421866 321 ntTSL 3 BASIC5.58□□□□□ -1.52
RFX1P22670 AC008267.5-201ENST00000424928 265 ntBASIC5.58□□□□□ -1.52
RFX1P22670 HMGB1P9-201ENST00000429856 646 ntBASIC5.58□□□□□ -1.52
RFX1P22670 AC097713.2-201ENST00000430199 356 ntBASIC5.58□□□□□ -1.52
RFX1P22670 AL157937.1-201ENST00000435092 443 ntTSL 3 BASIC5.58□□□□□ -1.52
RFX1P22670 TPT1P12-201ENST00000448968 492 ntBASIC5.58□□□□□ -1.52
RFX1P22670 AC091180.1-201ENST00000462104 372 ntBASIC5.58□□□□□ -1.52
RFX1P22670 AC009127.1-201ENST00000467090 155 ntBASIC5.58□□□□□ -1.52
RFX1P22670 AC010285.1-201ENST00000470580 392 ntBASIC5.58□□□□□ -1.52
RFX1P22670 AC015911.1-201ENST00000495111 156 ntBASIC5.58□□□□□ -1.52
RFX1P22670 AL359273.1-201ENST00000510918 627 ntBASIC5.58□□□□□ -1.52
RFX1P22670 RNA5SP384-201ENST00000516615 116 ntBASIC5.58□□□□□ -1.52
RFX1P22670 RNA5SP471-201ENST00000516971 106 ntBASIC5.58□□□□□ -1.52
RFX1P22670 AC113192.5-201ENST00000528779 486 ntTSL 2 BASIC5.58□□□□□ -1.52
RFX1P22670 AC024940.3-201ENST00000538551 316 ntBASIC5.58□□□□□ -1.52
RFX1P22670 AL157871.3-201ENST00000557231 293 ntBASIC5.58□□□□□ -1.52
RFX1P22670 AC020661.3-201ENST00000558101 414 ntTSL 3 BASIC5.58□□□□□ -1.52
RFX1P22670 AC023906.2-201ENST00000558343 462 ntTSL 3 BASIC5.58□□□□□ -1.52
RFX1P22670 AL031600.2-201ENST00000563223 307 ntTSL 5 BASIC5.58□□□□□ -1.52
RFX1P22670 AC087463.1-201ENST00000568541 556 ntTSL 2 BASIC5.58□□□□□ -1.52
RFX1P22670 NUTF2P8-201ENST00000604593 363 ntBASIC5.58□□□□□ -1.52
RFX1P22670 AL161798.1-201ENST00000604630 131 ntBASIC5.58□□□□□ -1.52
RFX1P22670 MACROD2-IT1-202ENST00000605675 575 ntTSL 5 BASIC5.58□□□□□ -1.52
RFX1P22670 AC093495.1-217ENST00000627385 428 ntTSL 5 BASIC5.58□□□□□ -1.52
RFX1P22670 AC119674.1-207ENST00000641355 633 ntBASIC5.58□□□□□ -1.52
RFX1P22670 STIL-204ENST00000396221 4558 ntAPPRIS ALT2 TSL 1 (best) BASIC5.58□□□□□ -1.52
RFX1P22670 KSR2-202ENST00000425217 17008 ntTSL 5 BASIC5.58□□□□□ -1.52
RFX1P22670 LRRC53-201ENST00000294635 3859 ntAPPRIS P1 TSL 5 BASIC5.58□□□□□ -1.52
RFX1P22670 FBXL13-207ENST00000455112 2274 ntTSL 1 (best) BASIC5.58□□□□□ -1.52
RFX1P22670 SKP1-202ENST00000353411 9474 ntAPPRIS P4 TSL 1 (best) BASIC5.58□□□□□ -1.52
RFX1P22670 KLHL13-203ENST00000371878 3234 ntTSL 2 BASIC5.57□□□□□ -1.52
RFX1P22670 AFTPH-204ENST00000409933 2811 ntAPPRIS ALT1 TSL 1 (best) BASIC5.57□□□□□ -1.52
RFX1P22670 NOL8P1-201ENST00000508336 3529 ntBASIC5.57□□□□□ -1.52
RFX1P22670 MYO3A-203ENST00000376302 2723 ntTSL 1 (best) BASIC5.57□□□□□ -1.52
RFX1P22670 TBC1D23-201ENST00000344949 3656 ntAPPRIS P1 TSL 1 (best) BASIC5.57□□□□□ -1.52
RFX1P22670 ZNF616-204ENST00000600228 4335 ntAPPRIS P1 TSL 1 (best) BASIC5.57□□□□□ -1.52
RFX1P22670 PCDH15-203ENST00000373955 4230 ntTSL 1 (best) BASIC5.57□□□□□ -1.52
RFX1P22670 Y_RNA.2-201ENST00000362330 96 ntBASIC5.57□□□□□ -1.52
RFX1P22670 RNA5SP123-201ENST00000363244 119 ntBASIC5.57□□□□□ -1.52
RFX1P22670 RNU6-596P-201ENST00000365395 98 ntBASIC5.57□□□□□ -1.52
RFX1P22670 DEFB119-203ENST00000376321 457 ntAPPRIS P3 TSL 1 (best) BASIC5.57□□□□□ -1.52
RFX1P22670 Y_RNA.401-201ENST00000383965 117 ntBASIC5.57□□□□□ -1.52
RFX1P22670 Y_RNA.527-201ENST00000384573 102 ntBASIC5.57□□□□□ -1.52
RFX1P22670 MIR192-201ENST00000384915 110 ntBASIC5.57□□□□□ -1.52
RFX1P22670 MIR1182-201ENST00000408363 97 ntBASIC5.57□□□□□ -1.52
RFX1P22670 Z86062.2-201ENST00000411442 380 ntTSL 5 BASIC5.57□□□□□ -1.52
RFX1P22670 AF186996.5-201ENST00000418098 904 ntBASIC5.57□□□□□ -1.52
RFX1P22670 LINC01204-201ENST00000422047 639 ntTSL 3 BASIC5.57□□□□□ -1.52
RFX1P22670 AC104333.2-201ENST00000422630 192 ntBASIC5.57□□□□□ -1.52
RFX1P22670 RSL24D1P6-201ENST00000426934 401 ntBASIC5.57□□□□□ -1.52
RFX1P22670 COX6CP13-201ENST00000428703 226 ntBASIC5.57□□□□□ -1.52
RFX1P22670 AL356867.1-201ENST00000429623 299 ntBASIC5.57□□□□□ -1.52
RFX1P22670 AC093581.1-202ENST00000430890 391 ntTSL 2 BASIC5.57□□□□□ -1.52
RFX1P22670 AL080313.1-201ENST00000434947 405 ntTSL 2 BASIC5.57□□□□□ -1.52
Retrieved 100 of 98,524 protein–RNA pairs in 99.3 ms