Protein–RNA interactions for Protein: P09016

HOXD4, Homeobox protein Hox-D4, humanhuman

Predicted RBP Predictions only

Length 255 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXD4P09016 LINC00529-201ENST00000443854 241 ntTSL 2 BASIC3□□□□□ -1.93
HOXD4P09016 GDI2P2-201ENST00000445131 608 ntBASIC3□□□□□ -1.93
HOXD4P09016 AL671855.1-201ENST00000446875 1203 ntBASIC3□□□□□ -1.93
HOXD4P09016 AC008264.1-201ENST00000447612 367 ntBASIC3□□□□□ -1.93
HOXD4P09016 ST13P20-201ENST00000447996 1065 ntBASIC3□□□□□ -1.93
HOXD4P09016 NRG3-AS1-201ENST00000448936 555 ntTSL 2 BASIC3□□□□□ -1.93
HOXD4P09016 PAXBP1P1-201ENST00000449315 447 ntBASIC3□□□□□ -1.93
HOXD4P09016 AC093110.1-201ENST00000456363 602 ntTSL 2 BASIC3□□□□□ -1.93
HOXD4P09016 RPS20P24-201ENST00000457473 361 ntBASIC3□□□□□ -1.93
HOXD4P09016 RPL27AP5-201ENST00000469428 449 ntBASIC3□□□□□ -1.93
HOXD4P09016 AC109925.1-201ENST00000478069 331 ntBASIC3□□□□□ -1.93
HOXD4P09016 AP000797.1-201ENST00000478870 387 ntBASIC3□□□□□ -1.93
HOXD4P09016 AC106872.3-201ENST00000495104 446 ntBASIC3□□□□□ -1.93
HOXD4P09016 AC021678.1-201ENST00000505195 936 ntBASIC3□□□□□ -1.93
HOXD4P09016 AC008652.1-201ENST00000505261 469 ntTSL 3 BASIC3□□□□□ -1.93
HOXD4P09016 AC034159.1-201ENST00000513885 583 ntBASIC3□□□□□ -1.93
HOXD4P09016 LINC02484-202ENST00000514877 546 ntTSL 3 BASIC3□□□□□ -1.93
HOXD4P09016 MIR2276-201ENST00000516886 89 ntBASIC3□□□□□ -1.93
HOXD4P09016 AP005357.1-201ENST00000520749 476 ntTSL 3 BASIC3□□□□□ -1.93
HOXD4P09016 AC090857.2-201ENST00000526362 723 ntTSL 2 BASIC3□□□□□ -1.93
HOXD4P09016 HIGD1AP1-201ENST00000550979 275 ntBASIC3□□□□□ -1.93
HOXD4P09016 AC138625.1-201ENST00000567556 483 ntTSL 3 BASIC3□□□□□ -1.93
HOXD4P09016 AC005951.1-201ENST00000576706 485 ntBASIC3□□□□□ -1.93
HOXD4P09016 AC012213.3-201ENST00000577199 777 ntBASIC3□□□□□ -1.93
HOXD4P09016 MIR3611-201ENST00000584484 83 ntBASIC3□□□□□ -1.93
HOXD4P09016 MIR7515HG-213ENST00000585872 758 ntTSL 5 BASIC3□□□□□ -1.93
HOXD4P09016 AC012593.1-213ENST00000587255 510 ntTSL 5 BASIC3□□□□□ -1.93
HOXD4P09016 AL137843.1-201ENST00000605078 385 ntBASIC3□□□□□ -1.93
HOXD4P09016 BCRP9-201ENST00000605312 388 ntBASIC3□□□□□ -1.93
HOXD4P09016 AL390208.1-201ENST00000605885 644 ntBASIC3□□□□□ -1.93
HOXD4P09016 AC004832.5-201ENST00000608677 401 ntBASIC3□□□□□ -1.93
HOXD4P09016 ADARB1-213ENST00000611195 159 ntTSL 5 BASIC3□□□□□ -1.93
HOXD4P09016 AC006329.2-201ENST00000611491 394 ntBASIC3□□□□□ -1.93
HOXD4P09016 AC122108.2-201ENST00000611946 526 ntBASIC3□□□□□ -1.93
HOXD4P09016 AC010678.1-201ENST00000614118 713 ntBASIC3□□□□□ -1.93
HOXD4P09016 AL157817.1-201ENST00000614264 790 ntBASIC3□□□□□ -1.93
HOXD4P09016 AL357080.1-201ENST00000617394 239 ntBASIC3□□□□□ -1.93
HOXD4P09016 AC009509.4-201ENST00000619202 509 ntBASIC3□□□□□ -1.93
HOXD4P09016 MIR6852-201ENST00000621699 66 ntBASIC3□□□□□ -1.93
HOXD4P09016 AC004009.2-201ENST00000623016 728 ntBASIC3□□□□□ -1.93
HOXD4P09016 AC084035.1-201ENST00000634543 607 ntBASIC3□□□□□ -1.93
HOXD4P09016 hsa-mir-4776-1.1-201ENST00000636364 80 ntBASIC3□□□□□ -1.93
HOXD4P09016 EVI5-201ENST00000370331 7403 ntAPPRIS P3 TSL 1 (best) BASIC3□□□□□ -1.93
HOXD4P09016 PHF6-205ENST00000625464 4434 ntAPPRIS ALT1 TSL 5 BASIC3□□□□□ -1.93
HOXD4P09016 AC244517.1-201ENST00000606030 2086 ntBASIC3□□□□□ -1.93
HOXD4P09016 AL356473.1-201ENST00000406203 1408 ntBASIC3□□□□□ -1.93
HOXD4P09016 AC007256.1-201ENST00000392253 2765 ntBASIC3□□□□□ -1.93
HOXD4P09016 THEMIS-201ENST00000368248 3866 ntAPPRIS P3 TSL 1 (best) BASIC2.99□□□□□ -1.93
HOXD4P09016 NUP58P1-201ENST00000502546 1738 ntBASIC2.99□□□□□ -1.93
HOXD4P09016 AC006378.2-201ENST00000623178 2476 ntBASIC2.99□□□□□ -1.93
HOXD4P09016 AC072062.1-210ENST00000628464 1315 ntTSL 5 BASIC2.99□□□□□ -1.93
HOXD4P09016 KCNH7-204ENST00000618399 3713 ntTSL 5 BASIC2.99□□□□□ -1.93
HOXD4P09016 CLOCK-201ENST00000309964 10304 ntAPPRIS P1 TSL 1 (best) BASIC2.99□□□□□ -1.93
HOXD4P09016 FGF7P2-201ENST00000332473 296 ntBASIC2.99□□□□□ -1.93
HOXD4P09016 RNA5SP295-201ENST00000362655 121 ntBASIC2.99□□□□□ -1.93
HOXD4P09016 OR5H15-201ENST00000383696 930 ntBASIC2.99□□□□□ -1.93
HOXD4P09016 AP000567.1-201ENST00000406413 156 ntBASIC2.99□□□□□ -1.93
HOXD4P09016 AC005162.2-201ENST00000411479 578 ntTSL 4 BASIC2.99□□□□□ -1.93
HOXD4P09016 RPL17P12-201ENST00000413391 526 ntBASIC2.99□□□□□ -1.93
HOXD4P09016 AC000123.1-201ENST00000418215 516 ntTSL 5 BASIC2.99□□□□□ -1.93
HOXD4P09016 ZNF885P-201ENST00000420174 1098 ntBASIC2.99□□□□□ -1.93
HOXD4P09016 AC012065.2-201ENST00000421295 375 ntBASIC2.99□□□□□ -1.93
HOXD4P09016 AL353678.1-201ENST00000422735 741 ntBASIC2.99□□□□□ -1.93
HOXD4P09016 SLC44A3-AS1-205ENST00000424505 612 ntBASIC2.99□□□□□ -1.93
HOXD4P09016 AC007271.1-201ENST00000428188 382 ntTSL 3 BASIC2.99□□□□□ -1.93
HOXD4P09016 AL138775.1-201ENST00000429539 575 ntTSL 1 (best) BASIC2.99□□□□□ -1.93
HOXD4P09016 AC104653.2-201ENST00000435407 416 ntTSL 3 BASIC2.99□□□□□ -1.93
HOXD4P09016 AL662791.1-201ENST00000441992 928 ntBASIC2.99□□□□□ -1.93
HOXD4P09016 NUTM2A-AS1-209ENST00000447424 571 ntTSL 3 BASIC2.99□□□□□ -1.93
HOXD4P09016 RPL7P52-201ENST00000449200 742 ntBASIC2.99□□□□□ -1.93
HOXD4P09016 OR6K1P-201ENST00000456766 971 ntBASIC2.99□□□□□ -1.93
HOXD4P09016 LINC01445-202ENST00000458615 679 ntTSL 2 BASIC2.99□□□□□ -1.93
HOXD4P09016 LINC00492-201ENST00000504436 593 ntTSL 3 BASIC2.99□□□□□ -1.93
HOXD4P09016 AC093297.2-207ENST00000505401 692 ntTSL 3 BASIC2.99□□□□□ -1.93
HOXD4P09016 MTND4LP22-201ENST00000508209 276 ntBASIC2.99□□□□□ -1.93
HOXD4P09016 LINC02364-201ENST00000514802 687 ntTSL 2 BASIC2.99□□□□□ -1.93
HOXD4P09016 MTCO2P32-201ENST00000514865 403 ntBASIC2.99□□□□□ -1.93
HOXD4P09016 AC025881.1-201ENST00000518851 512 ntBASIC2.99□□□□□ -1.93
HOXD4P09016 AP001205.1-201ENST00000521625 449 ntTSL 3 BASIC2.99□□□□□ -1.93
HOXD4P09016 AP006245.1-201ENST00000522549 120 ntBASIC2.99□□□□□ -1.93
HOXD4P09016 AC026894.1-202ENST00000533843 477 ntTSL 5 BASIC2.99□□□□□ -1.93
HOXD4P09016 AC018410.2-201ENST00000540410 610 ntTSL 5 BASIC2.99□□□□□ -1.93
HOXD4P09016 PPFIA2-AS1-205ENST00000550938 790 ntTSL 3 BASIC2.99□□□□□ -1.93
HOXD4P09016 AL121603.1-201ENST00000553815 142 ntBASIC2.99□□□□□ -1.93
HOXD4P09016 AL355773.1-201ENST00000554458 459 ntTSL 3 BASIC2.99□□□□□ -1.93
HOXD4P09016 AL352979.2-201ENST00000556988 366 ntTSL 3 BASIC2.99□□□□□ -1.93
HOXD4P09016 AGGF1P4-201ENST00000568249 801 ntBASIC2.99□□□□□ -1.93
HOXD4P09016 AC015917.1-201ENST00000579654 510 ntBASIC2.99□□□□□ -1.93
HOXD4P09016 AC091691.2-201ENST00000581940 567 ntTSL 4 BASIC2.99□□□□□ -1.93
HOXD4P09016 AC090409.2-202ENST00000585706 604 ntTSL 5 BASIC2.99□□□□□ -1.93
HOXD4P09016 AC016229.1-201ENST00000589242 487 ntTSL 5 BASIC2.99□□□□□ -1.93
HOXD4P09016 AC083760.1-201ENST00000589621 670 ntBASIC2.99□□□□□ -1.93
HOXD4P09016 PRELID3BP8-201ENST00000604148 295 ntBASIC2.99□□□□□ -1.93
HOXD4P09016 AC112187.2-201ENST00000604345 283 ntBASIC2.99□□□□□ -1.93
HOXD4P09016 AC087752.4-201ENST00000605911 462 ntBASIC2.99□□□□□ -1.93
HOXD4P09016 AL162274.2-201ENST00000614406 332 ntBASIC2.99□□□□□ -1.93
HOXD4P09016 AC008505.1-205ENST00000637847 703 ntTSL 5 BASIC2.99□□□□□ -1.93
HOXD4P09016 AL035425.3-201ENST00000564206 4996 ntBASIC2.99□□□□□ -1.93
HOXD4P09016 EVI2B-202ENST00000577894 1597 ntAPPRIS P1 TSL 2 BASIC2.99□□□□□ -1.93
HOXD4P09016 ZNF322-205ENST00000471278 2675 ntAPPRIS P1 TSL 5 BASIC2.98□□□□□ -1.93
Retrieved 100 of 98,524 protein–RNA pairs in 92.5 ms