Protein–RNA interactions for Protein: O43248

HOXC11, Homeobox protein Hox-C11, humanhuman

Predicted RBP Predictions only

Length 304 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXC11O43248 AP000873.5-201ENST00000533906 236 ntBASIC3.7□□□□□ -1.82
HOXC11O43248 NR2F2-AS1-211ENST00000561402 589 ntTSL 3 BASIC3.7□□□□□ -1.82
HOXC11O43248 AC137800.2-201ENST00000574375 120 ntBASIC3.7□□□□□ -1.82
HOXC11O43248 AC099489.2-201ENST00000574976 260 ntBASIC3.7□□□□□ -1.82
HOXC11O43248 NBR2-204ENST00000587322 63 ntBASIC3.7□□□□□ -1.82
HOXC11O43248 HMGN1P30-201ENST00000589286 268 ntBASIC3.7□□□□□ -1.82
HOXC11O43248 TTN-AS1-243ENST00000591867 748 ntTSL 5 BASIC3.7□□□□□ -1.82
HOXC11O43248 SEPT7P9-203ENST00000604116 343 ntBASIC3.7□□□□□ -1.82
HOXC11O43248 AL161756.2-201ENST00000604597 246 ntBASIC3.7□□□□□ -1.82
HOXC11O43248 AC004696.1-201ENST00000614345 607 ntBASIC3.7□□□□□ -1.82
HOXC11O43248 AC244472.2-201ENST00000617639 406 ntAPPRIS P1 BASIC3.7□□□□□ -1.82
HOXC11O43248 AL732618.1-201ENST00000623251 301 ntBASIC3.7□□□□□ -1.82
HOXC11O43248 FOXP2-227ENST00000638397 240 ntTSL 5 BASIC3.7□□□□□ -1.82
HOXC11O43248 MAPK10-373ENST00000641983 6772 ntBASIC3.7□□□□□ -1.82
HOXC11O43248 SPZ1-201ENST00000296739 1868 ntAPPRIS P2 BASIC3.7□□□□□ -1.82
HOXC11O43248 DNAJC10-201ENST00000264065 20129 ntAPPRIS P1 TSL 1 (best) BASIC3.7□□□□□ -1.82
HOXC11O43248 N4BP2L2-201ENST00000267068 9427 ntAPPRIS P1 TSL 1 (best) BASIC3.7□□□□□ -1.82
HOXC11O43248 KIAA1841-211ENST00000612149 4202 ntTSL 5 BASIC3.7□□□□□ -1.82
HOXC11O43248 PKN2-AS1-202ENST00000458097 3542 ntTSL 2 BASIC3.7□□□□□ -1.82
HOXC11O43248 METTL18-201ENST00000303469 1426 ntAPPRIS P1 TSL 1 (best) BASIC3.7□□□□□ -1.82
HOXC11O43248 AC073346.2-201ENST00000624724 2058 ntBASIC3.69□□□□□ -1.82
HOXC11O43248 AGTR1-206ENST00000474935 1795 ntAPPRIS P1 TSL 3 BASIC3.69□□□□□ -1.82
HOXC11O43248 AC018462.1-201ENST00000425966 1684 ntTSL 1 (best) BASIC3.69□□□□□ -1.82
HOXC11O43248 KIAA1524-206ENST00000491772 3877 ntTSL 1 (best) BASIC3.69□□□□□ -1.82
HOXC11O43248 KCNT2-202ENST00000367433 5883 ntTSL 1 (best) BASIC3.69□□□□□ -1.82
HOXC11O43248 MTND5P1-201ENST00000445440 1375 ntBASIC3.69□□□□□ -1.82
HOXC11O43248 SPA17-201ENST00000227135 853 ntAPPRIS P1 TSL 1 (best) BASIC3.69□□□□□ -1.82
HOXC11O43248 RNA5SP50-201ENST00000363731 107 ntBASIC3.69□□□□□ -1.82
HOXC11O43248 SPRR2D-203ENST00000368757 800 ntAPPRIS P1 TSL 3 BASIC3.69□□□□□ -1.82
HOXC11O43248 SNORA9-201ENST00000384215 133 ntBASIC3.69□□□□□ -1.82
HOXC11O43248 RNVU1-14-201ENST00000384770 164 ntBASIC3.69□□□□□ -1.82
HOXC11O43248 MIR490-201ENST00000384865 128 ntBASIC3.69□□□□□ -1.82
HOXC11O43248 AL359634.1-202ENST00000404721 284 ntBASIC3.69□□□□□ -1.82
HOXC11O43248 AC105271.1-202ENST00000411417 445 ntTSL 3 BASIC3.69□□□□□ -1.82
HOXC11O43248 RPS3AP3-201ENST00000411933 242 ntBASIC3.69□□□□□ -1.82
HOXC11O43248 AL451054.2-201ENST00000420896 202 ntBASIC3.69□□□□□ -1.82
HOXC11O43248 C1orf195-201ENST00000424792 255 ntTSL 2 BASIC3.69□□□□□ -1.82
HOXC11O43248 AL512656.1-201ENST00000427492 401 ntTSL 2 BASIC3.69□□□□□ -1.82
HOXC11O43248 AC004160.1-205ENST00000428967 577 ntTSL 4 BASIC3.69□□□□□ -1.82
HOXC11O43248 AC097713.2-201ENST00000430199 356 ntBASIC3.69□□□□□ -1.82
HOXC11O43248 ATP5JP1-201ENST00000431631 322 ntBASIC3.69□□□□□ -1.82
HOXC11O43248 LINC01797-202ENST00000433432 765 ntTSL 3 BASIC3.69□□□□□ -1.82
HOXC11O43248 AC016696.1-201ENST00000446949 318 ntBASIC3.69□□□□□ -1.82
HOXC11O43248 AL590664.1-201ENST00000448065 339 ntBASIC3.69□□□□□ -1.82
HOXC11O43248 MTND1P27-201ENST00000451117 902 ntBASIC3.69□□□□□ -1.82
HOXC11O43248 MTND1P12-201ENST00000455231 147 ntBASIC3.69□□□□□ -1.82
HOXC11O43248 AC092264.1-201ENST00000456002 713 ntTSL 5 BASIC3.69□□□□□ -1.82
HOXC11O43248 AL359915.2-203ENST00000457043 540 ntTSL 3 BASIC3.69□□□□□ -1.82
HOXC11O43248 ASH1L-IT1-201ENST00000458371 448 ntTSL 5 BASIC3.69□□□□□ -1.82
HOXC11O43248 AL358832.1-201ENST00000497800 389 ntBASIC3.69□□□□□ -1.82
HOXC11O43248 AC010587.1-201ENST00000505809 469 ntBASIC3.69□□□□□ -1.82
HOXC11O43248 AC026784.1-201ENST00000507986 352 ntBASIC3.69□□□□□ -1.82
HOXC11O43248 SNORA70.18-201ENST00000516696 98 ntBASIC3.69□□□□□ -1.82
HOXC11O43248 NRON-201ENST00000517270 370 ntBASIC3.69□□□□□ -1.82
HOXC11O43248 OR5G4P-201ENST00000525251 760 ntBASIC3.69□□□□□ -1.82
HOXC11O43248 AC004024.1-201ENST00000549244 247 ntBASIC3.69□□□□□ -1.82
HOXC11O43248 AC128657.1-201ENST00000549459 145 ntBASIC3.69□□□□□ -1.82
HOXC11O43248 MIR4293-201ENST00000584305 78 ntBASIC3.69□□□□□ -1.82
HOXC11O43248 LINC01909-202ENST00000584919 815 ntTSL 3 BASIC3.69□□□□□ -1.82
HOXC11O43248 AP005264.4-201ENST00000592203 422 ntTSL 5 BASIC3.69□□□□□ -1.82
HOXC11O43248 AC013553.2-201ENST00000604244 589 ntBASIC3.69□□□□□ -1.82
HOXC11O43248 CEP164P1-207ENST00000608660 504 ntTSL 5 BASIC3.69□□□□□ -1.82
HOXC11O43248 AP001506.1-201ENST00000615444 211 ntBASIC3.69□□□□□ -1.82
HOXC11O43248 ABCC9-206ENST00000621589 450 ntTSL 5 BASIC3.69□□□□□ -1.82
HOXC11O43248 AC008781.3-201ENST00000622826 335 ntTSL 2 BASIC3.69□□□□□ -1.82
HOXC11O43248 AC027309.3-201ENST00000623419 351 ntBASIC3.69□□□□□ -1.82
HOXC11O43248 AL603839.4-201ENST00000624658 1005 ntBASIC3.69□□□□□ -1.82
HOXC11O43248 TTN-AS1-263ENST00000627527 784 ntTSL 5 BASIC3.69□□□□□ -1.82
HOXC11O43248 AC008505.1-204ENST00000637363 2714 ntTSL 5 BASIC3.69□□□□□ -1.82
HOXC11O43248 DNAH8-202ENST00000359357 13864 ntAPPRIS ALT2 TSL 2 BASIC3.69□□□□□ -1.82
HOXC11O43248 TLR10-206ENST00000508334 2616 ntAPPRIS P1 TSL 1 (best) BASIC3.69□□□□□ -1.82
HOXC11O43248 LINC01094-203ENST00000504675 1985 ntTSL 2 BASIC3.69□□□□□ -1.82
HOXC11O43248 LRRC49-224ENST00000560691 2531 ntTSL 2 BASIC3.69□□□□□ -1.82
HOXC11O43248 RTN4-209ENST00000405240 4061 ntTSL 1 (best) BASIC3.69□□□□□ -1.82
HOXC11O43248 GABRG2-213ENST00000639046 3058 ntTSL 5 BASIC3.68□□□□□ -1.82
HOXC11O43248 AC100800.1-201ENST00000524252 2054 ntTSL 1 (best) BASIC3.68□□□□□ -1.82
HOXC11O43248 GNG5P1-201ENST00000255500 204 ntBASIC3.68□□□□□ -1.82
HOXC11O43248 RNU1-33P-201ENST00000364249 162 ntBASIC3.68□□□□□ -1.82
HOXC11O43248 AL589872.1-201ENST00000426602 288 ntBASIC3.68□□□□□ -1.82
HOXC11O43248 AL360169.1-201ENST00000435116 143 ntTSL 5 BASIC3.68□□□□□ -1.82
HOXC11O43248 NDUFB1P1-201ENST00000435191 180 ntBASIC3.68□□□□□ -1.82
HOXC11O43248 LINC01757-201ENST00000435552 480 ntTSL 2 BASIC3.68□□□□□ -1.82
HOXC11O43248 MTCO2P16-201ENST00000436962 677 ntBASIC3.68□□□□□ -1.82
HOXC11O43248 UPP2-IT1-201ENST00000439185 357 ntTSL 3 BASIC3.68□□□□□ -1.82
HOXC11O43248 USP9YP15-201ENST00000442391 422 ntBASIC3.68□□□□□ -1.82
HOXC11O43248 CBWD4P-201ENST00000445695 655 ntBASIC3.68□□□□□ -1.82
HOXC11O43248 AP000936.2-201ENST00000447151 681 ntBASIC3.68□□□□□ -1.82
HOXC11O43248 AC004801.2-202ENST00000463559 283 ntBASIC3.68□□□□□ -1.82
HOXC11O43248 LARP1BP2-201ENST00000486594 519 ntBASIC3.68□□□□□ -1.82
HOXC11O43248 AC092666.1-202ENST00000493400 442 ntTSL 2 BASIC3.68□□□□□ -1.82
HOXC11O43248 AC105313.1-201ENST00000509121 353 ntBASIC3.68□□□□□ -1.82
HOXC11O43248 SLC7A11-AS1-201ENST00000510066 817 ntTSL 2 BASIC3.68□□□□□ -1.82
HOXC11O43248 RNU2-10P-201ENST00000516375 211 ntBASIC3.68□□□□□ -1.82
HOXC11O43248 IGHV3-76-201ENST00000522465 295 ntBASIC3.68□□□□□ -1.82
HOXC11O43248 ATP5F1P5-201ENST00000526403 760 ntBASIC3.68□□□□□ -1.82
HOXC11O43248 AC107023.1-201ENST00000552757 356 ntTSL 5 BASIC3.68□□□□□ -1.82
HOXC11O43248 AC016987.2-201ENST00000560696 351 ntTSL 3 BASIC3.68□□□□□ -1.82
HOXC11O43248 AC003687.1-201ENST00000578040 427 ntTSL 3 BASIC3.68□□□□□ -1.82
HOXC11O43248 AC022150.3-201ENST00000599143 880 ntTSL 5 BASIC3.68□□□□□ -1.82
HOXC11O43248 AC087752.4-201ENST00000605911 462 ntBASIC3.68□□□□□ -1.82
Retrieved 100 of 98,524 protein–RNA pairs in 83.7 ms