Protein–RNA interactions for Protein: Q9Y5H4

PCDHGA1, Protocadherin gamma-A1, humanhuman

Predictions only

Length 931 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDHGA1Q9Y5H4 RPL5P18-201ENST00000406671 891 ntBASIC3.21□□□□□ -1.9
PCDHGA1Q9Y5H4 NT5C3A-205ENST00000409467 1032 ntAPPRIS ALT1 TSL 5 BASIC3.21□□□□□ -1.9
PCDHGA1Q9Y5H4 RPS15AP6-201ENST00000420703 385 ntBASIC3.21□□□□□ -1.9
PCDHGA1Q9Y5H4 DNAJA1P2-201ENST00000421360 1197 ntBASIC3.21□□□□□ -1.9
PCDHGA1Q9Y5H4 LINC01402-201ENST00000422226 279 ntTSL 3 BASIC3.21□□□□□ -1.9
PCDHGA1Q9Y5H4 BX119904.4-201ENST00000424402 301 ntBASIC3.21□□□□□ -1.9
PCDHGA1Q9Y5H4 ZFY-AS1-202ENST00000431145 419 ntTSL 3 BASIC3.21□□□□□ -1.9
PCDHGA1Q9Y5H4 UBE2FP3-201ENST00000436366 524 ntBASIC3.21□□□□□ -1.9
PCDHGA1Q9Y5H4 DIAPH2-AS1-202ENST00000445414 606 ntTSL 2 BASIC3.21□□□□□ -1.9
PCDHGA1Q9Y5H4 GRM7-AS3-209ENST00000458713 454 ntTSL 3 BASIC3.21□□□□□ -1.9
PCDHGA1Q9Y5H4 AC010468.1-201ENST00000461022 817 ntBASIC3.21□□□□□ -1.9
PCDHGA1Q9Y5H4 AP001025.2-201ENST00000490908 477 ntBASIC3.21□□□□□ -1.9
PCDHGA1Q9Y5H4 AC034222.1-201ENST00000494052 532 ntBASIC3.21□□□□□ -1.9
PCDHGA1Q9Y5H4 SCOC-205ENST00000502535 679 ntAPPRIS ALT1 TSL 3 BASIC3.21□□□□□ -1.9
PCDHGA1Q9Y5H4 LINC02198-201ENST00000504280 810 ntTSL 3 BASIC3.21□□□□□ -1.9
PCDHGA1Q9Y5H4 AC006445.2-201ENST00000510061 472 ntBASIC3.21□□□□□ -1.9
PCDHGA1Q9Y5H4 SCARNA15.2-201ENST00000516409 127 ntBASIC3.21□□□□□ -1.9
PCDHGA1Q9Y5H4 A2ML1-AS1-201ENST00000537288 452 ntTSL 3 BASIC3.21□□□□□ -1.9
PCDHGA1Q9Y5H4 LINC02300-201ENST00000549742 665 ntTSL 4 BASIC3.21□□□□□ -1.9
PCDHGA1Q9Y5H4 HIGD1AP1-201ENST00000550979 275 ntBASIC3.21□□□□□ -1.9
PCDHGA1Q9Y5H4 AC125611.2-201ENST00000551907 647 ntBASIC3.21□□□□□ -1.9
PCDHGA1Q9Y5H4 AC034268.2-201ENST00000571784 482 ntBASIC3.21□□□□□ -1.9
PCDHGA1Q9Y5H4 MIR4425-201ENST00000580572 84 ntBASIC3.21□□□□□ -1.9
PCDHGA1Q9Y5H4 LINC01893-201ENST00000581750 479 ntTSL 3 BASIC3.21□□□□□ -1.9
PCDHGA1Q9Y5H4 GLUD1P4-201ENST00000590914 418 ntBASIC3.21□□□□□ -1.9
PCDHGA1Q9Y5H4 AC008739.1-201ENST00000598137 575 ntTSL 2 BASIC3.21□□□□□ -1.9
PCDHGA1Q9Y5H4 AC097468.3-201ENST00000607956 456 ntBASIC3.21□□□□□ -1.9
PCDHGA1Q9Y5H4 AC068506.1-202ENST00000613388 545 ntTSL 3 BASIC3.21□□□□□ -1.9
PCDHGA1Q9Y5H4 AC013476.2-201ENST00000614456 459 ntBASIC3.21□□□□□ -1.9
PCDHGA1Q9Y5H4 AL356321.1-201ENST00000621360 228 ntBASIC3.21□□□□□ -1.9
PCDHGA1Q9Y5H4 LINC01090-203ENST00000632331 466 ntTSL 5 BASIC3.21□□□□□ -1.9
PCDHGA1Q9Y5H4 AC093010.3-201ENST00000570269 15214 ntBASIC3.21□□□□□ -1.9
PCDHGA1Q9Y5H4 EVI2A-201ENST00000247270 1860 ntAPPRIS P3 TSL 2 BASIC3.21□□□□□ -1.9
PCDHGA1Q9Y5H4 SYNE2-212ENST00000554584 20508 ntTSL 5 BASIC3.21□□□□□ -1.9
PCDHGA1Q9Y5H4 AC022336.2-201ENST00000568966 2538 ntBASIC3.21□□□□□ -1.9
PCDHGA1Q9Y5H4 ZNF705G-201ENST00000400156 3644 ntAPPRIS P1 TSL 2 BASIC3.2□□□□□ -1.9
PCDHGA1Q9Y5H4 LRRTM2-201ENST00000274711 6017 ntAPPRIS P1 TSL 1 (best) BASIC3.2□□□□□ -1.9
PCDHGA1Q9Y5H4 SLC5A3-201ENST00000381151 11576 ntAPPRIS P1 TSL 1 (best) BASIC3.2□□□□□ -1.9
PCDHGA1Q9Y5H4 PHF6-205ENST00000625464 4434 ntAPPRIS ALT1 TSL 5 BASIC3.2□□□□□ -1.9
PCDHGA1Q9Y5H4 OR6C70-201ENST00000327335 939 ntAPPRIS P1 BASIC3.2□□□□□ -1.9
PCDHGA1Q9Y5H4 Y_RNA.18-201ENST00000362461 102 ntBASIC3.2□□□□□ -1.9
PCDHGA1Q9Y5H4 Y_RNA.302-201ENST00000364997 102 ntBASIC3.2□□□□□ -1.9
PCDHGA1Q9Y5H4 SNORA44-201ENST00000384584 132 ntBASIC3.2□□□□□ -1.9
PCDHGA1Q9Y5H4 MIR1305-201ENST00000408300 86 ntBASIC3.2□□□□□ -1.9
PCDHGA1Q9Y5H4 MTCO1P17-201ENST00000411522 491 ntBASIC3.2□□□□□ -1.9
PCDHGA1Q9Y5H4 AL138962.1-201ENST00000417987 411 ntTSL 5 BASIC3.2□□□□□ -1.9
PCDHGA1Q9Y5H4 AC106873.1-201ENST00000420664 459 ntTSL 3 BASIC3.2□□□□□ -1.9
PCDHGA1Q9Y5H4 EIF1AX-AS1-201ENST00000424026 378 ntTSL 5 BASIC3.2□□□□□ -1.9
PCDHGA1Q9Y5H4 AL593851.1-201ENST00000426171 157 ntBASIC3.2□□□□□ -1.9
PCDHGA1Q9Y5H4 TAAR7P-201ENST00000436141 242 ntBASIC3.2□□□□□ -1.9
PCDHGA1Q9Y5H4 RSU1P2-202ENST00000437884 485 ntBASIC3.2□□□□□ -1.9
PCDHGA1Q9Y5H4 AL137789.1-201ENST00000439443 682 ntTSL 3 BASIC3.2□□□□□ -1.9
PCDHGA1Q9Y5H4 MTND5P2-201ENST00000442927 1142 ntBASIC3.2□□□□□ -1.9
PCDHGA1Q9Y5H4 AP000542.1-201ENST00000448473 371 ntBASIC3.2□□□□□ -1.9
PCDHGA1Q9Y5H4 AL139824.2-201ENST00000458731 1095 ntBASIC3.2□□□□□ -1.9
PCDHGA1Q9Y5H4 LINC02377-201ENST00000500169 450 ntTSL 3 BASIC3.2□□□□□ -1.9
PCDHGA1Q9Y5H4 NREP-AS1-201ENST00000503242 411 ntTSL 3 BASIC3.2□□□□□ -1.9
PCDHGA1Q9Y5H4 AC022447.3-201ENST00000506865 495 ntBASIC3.2□□□□□ -1.9
PCDHGA1Q9Y5H4 POU5F1P7-201ENST00000508759 541 ntBASIC3.2□□□□□ -1.9
PCDHGA1Q9Y5H4 LINC01861-201ENST00000509568 537 ntTSL 4 BASIC3.2□□□□□ -1.9
PCDHGA1Q9Y5H4 MTND5P4-201ENST00000514978 288 ntBASIC3.2□□□□□ -1.9
PCDHGA1Q9Y5H4 AC010280.1-201ENST00000515199 340 ntTSL 2 BASIC3.2□□□□□ -1.9
PCDHGA1Q9Y5H4 SNORA31.22-201ENST00000517204 135 ntBASIC3.2□□□□□ -1.9
PCDHGA1Q9Y5H4 NCRNA00250-201ENST00000519500 519 ntTSL 4 BASIC3.2□□□□□ -1.9
PCDHGA1Q9Y5H4 AC026904.2-201ENST00000521359 537 ntTSL 3 BASIC3.2□□□□□ -1.9
PCDHGA1Q9Y5H4 LINC02384-205ENST00000539404 785 ntTSL 3 BASIC3.2□□□□□ -1.9
PCDHGA1Q9Y5H4 LINC02460-201ENST00000543558 536 ntTSL 4 BASIC3.2□□□□□ -1.9
PCDHGA1Q9Y5H4 AC022080.3-201ENST00000544433 482 ntBASIC3.2□□□□□ -1.9
PCDHGA1Q9Y5H4 AC007513.1-201ENST00000548740 379 ntTSL 3 BASIC3.2□□□□□ -1.9
PCDHGA1Q9Y5H4 LINC01467-201ENST00000554211 1187 ntTSL 1 (best) BASIC3.2□□□□□ -1.9
PCDHGA1Q9Y5H4 ACTR3BP3-201ENST00000565577 979 ntBASIC3.2□□□□□ -1.9
PCDHGA1Q9Y5H4 AC087463.1-201ENST00000568541 556 ntTSL 2 BASIC3.2□□□□□ -1.9
PCDHGA1Q9Y5H4 AC020978.4-201ENST00000569088 460 ntTSL 3 BASIC3.2□□□□□ -1.9
PCDHGA1Q9Y5H4 AC007598.2-201ENST00000569490 539 ntTSL 3 BASIC3.2□□□□□ -1.9
PCDHGA1Q9Y5H4 AD001527.1-201ENST00000604228 379 ntTSL 5 BASIC3.2□□□□□ -1.9
PCDHGA1Q9Y5H4 HSPE1P7-201ENST00000604681 321 ntBASIC3.2□□□□□ -1.9
PCDHGA1Q9Y5H4 AC138932.5-201ENST00000617759 563 ntBASIC3.2□□□□□ -1.9
PCDHGA1Q9Y5H4 AL365361.1-201ENST00000566942 3481 ntBASIC3.2□□□□□ -1.9
PCDHGA1Q9Y5H4 SENP7-204ENST00000394085 1483 ntTSL 1 (best) BASIC3.2□□□□□ -1.9
PCDHGA1Q9Y5H4 API5P2-201ENST00000397055 1498 ntBASIC3.2□□□□□ -1.9
PCDHGA1Q9Y5H4 ERBIN-201ENST00000284037 8647 ntTSL 1 (best) BASIC3.2□□□□□ -1.9
PCDHGA1Q9Y5H4 AC091564.4-201ENST00000533934 2194 ntBASIC3.19□□□□□ -1.9
PCDHGA1Q9Y5H4 ZNF804B-202ENST00000611114 3968 ntTSL 5 BASIC3.19□□□□□ -1.9
PCDHGA1Q9Y5H4 PWAR6-201ENST00000552334 4618 ntBASIC3.19□□□□□ -1.9
PCDHGA1Q9Y5H4 APOH-201ENST00000205948 1176 ntAPPRIS P1 TSL 1 (best) BASIC3.19□□□□□ -1.9
PCDHGA1Q9Y5H4 UTS2-202ENST00000361696 559 ntAPPRIS ALT2 TSL 1 (best) BASIC3.19□□□□□ -1.9
PCDHGA1Q9Y5H4 SPRR2E-201ENST00000368750 678 ntAPPRIS P1 TSL 1 (best) BASIC3.19□□□□□ -1.9
PCDHGA1Q9Y5H4 CD24P4-201ENST00000382840 243 ntBASIC3.19□□□□□ -1.9
PCDHGA1Q9Y5H4 UBE2V1P2-201ENST00000397758 440 ntBASIC3.19□□□□□ -1.9
PCDHGA1Q9Y5H4 C1D-204ENST00000410067 736 ntAPPRIS P1 TSL 1 (best) BASIC3.19□□□□□ -1.9
PCDHGA1Q9Y5H4 RNU6-516P-201ENST00000411381 104 ntBASIC3.19□□□□□ -1.9
PCDHGA1Q9Y5H4 SPA17P1-201ENST00000416656 452 ntBASIC3.19□□□□□ -1.9
PCDHGA1Q9Y5H4 RPL31P12-201ENST00000422587 358 ntBASIC3.19□□□□□ -1.9
PCDHGA1Q9Y5H4 AC011233.1-201ENST00000422812 283 ntBASIC3.19□□□□□ -1.9
PCDHGA1Q9Y5H4 AC008850.1-201ENST00000427546 362 ntBASIC3.19□□□□□ -1.9
PCDHGA1Q9Y5H4 OR4K11P-201ENST00000431829 904 ntBASIC3.19□□□□□ -1.9
PCDHGA1Q9Y5H4 AL592182.1-201ENST00000440897 250 ntTSL 5 BASIC3.19□□□□□ -1.9
PCDHGA1Q9Y5H4 AL731568.1-201ENST00000445111 434 ntTSL 2 BASIC3.19□□□□□ -1.9
PCDHGA1Q9Y5H4 FGF14-AS1-202ENST00000451630 321 ntTSL 2 BASIC3.19□□□□□ -1.9
PCDHGA1Q9Y5H4 OR6C5P-201ENST00000452388 923 ntBASIC3.19□□□□□ -1.9
Retrieved 100 of 98,524 protein–RNA pairs in 91.7 ms