Protein–RNA interactions for Protein: Q9Y2B5

VPS9D1, VPS9 domain-containing protein 1, humanhuman

Predictions only

Length 631 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS9D1Q9Y2B5 HMGB1P14-201ENST00000557424 591 ntBASIC5.96□□□□□ -1.46
VPS9D1Q9Y2B5 MRPS21P8-201ENST00000569196 235 ntBASIC5.96□□□□□ -1.46
VPS9D1Q9Y2B5 OR1E3-201ENST00000575608 948 ntBASIC5.96□□□□□ -1.46
VPS9D1Q9Y2B5 AP001021.1-201ENST00000577704 244 ntTSL 3 BASIC5.96□□□□□ -1.46
VPS9D1Q9Y2B5 MIR4433B-201ENST00000581329 102 ntBASIC5.96□□□□□ -1.46
VPS9D1Q9Y2B5 NF1P5-201ENST00000588287 448 ntBASIC5.96□□□□□ -1.46
VPS9D1Q9Y2B5 LINC01198-204ENST00000594153 552 ntTSL 3 BASIC5.96□□□□□ -1.46
VPS9D1Q9Y2B5 AC024153.1-201ENST00000603103 365 ntBASIC5.96□□□□□ -1.46
VPS9D1Q9Y2B5 RPL12P48-201ENST00000605620 304 ntBASIC5.96□□□□□ -1.46
VPS9D1Q9Y2B5 AC109309.2-201ENST00000612597 332 ntBASIC5.96□□□□□ -1.46
VPS9D1Q9Y2B5 DSCR8-208ENST00000614538 403 ntAPPRIS P5 TSL 5 BASIC5.96□□□□□ -1.46
VPS9D1Q9Y2B5 uc_338.31-201ENST00000615595 186 ntBASIC5.96□□□□□ -1.46
VPS9D1Q9Y2B5 U6.95-201ENST00000636931 70 ntBASIC5.96□□□□□ -1.46
VPS9D1Q9Y2B5 MIR3914-2-201ENST00000637339 95 ntBASIC5.96□□□□□ -1.46
VPS9D1Q9Y2B5 WDR64-201ENST00000366552 4371 ntAPPRIS P1 TSL 5 BASIC5.96□□□□□ -1.46
VPS9D1Q9Y2B5 PRRC1-201ENST00000296666 4699 ntAPPRIS P1 TSL 1 (best) BASIC5.96□□□□□ -1.46
VPS9D1Q9Y2B5 ZNF337-AS1-201ENST00000414393 4666 ntTSL 2 BASIC5.96□□□□□ -1.46
VPS9D1Q9Y2B5 KIN-201ENST00000379562 6348 ntAPPRIS P1 TSL 1 (best) BASIC5.96□□□□□ -1.46
VPS9D1Q9Y2B5 KLHL2-210ENST00000538127 2907 ntTSL 1 (best) BASIC5.96□□□□□ -1.46
VPS9D1Q9Y2B5 PRUNE2-201ENST00000223609 2697 ntTSL 2 BASIC5.96□□□□□ -1.46
VPS9D1Q9Y2B5 PLS1-211ENST00000497002 2258 ntAPPRIS P1 TSL 1 (best) BASIC5.96□□□□□ -1.46
VPS9D1Q9Y2B5 TTBK2-201ENST00000267890 10905 ntAPPRIS P2 TSL 5 BASIC5.96□□□□□ -1.46
VPS9D1Q9Y2B5 PIGN-247ENST00000640540 4720 ntTSL 5 BASIC5.96□□□□□ -1.46
VPS9D1Q9Y2B5 GTF2IP4-201ENST00000453092 2054 ntBASIC5.95□□□□□ -1.46
VPS9D1Q9Y2B5 KCNT2-203ENST00000451324 3146 ntTSL 1 (best) BASIC5.95□□□□□ -1.46
VPS9D1Q9Y2B5 ETV1-208ENST00000420159 6231 ntTSL 2 BASIC5.95□□□□□ -1.46
VPS9D1Q9Y2B5 AC012254.3-201ENST00000591183 2117 ntBASIC5.95□□□□□ -1.46
VPS9D1Q9Y2B5 G3BP1-202ENST00000394123 10240 ntAPPRIS P1 TSL 1 (best) BASIC5.95□□□□□ -1.46
VPS9D1Q9Y2B5 ZNF107-201ENST00000344930 5174 ntTSL 1 (best) BASIC5.95□□□□□ -1.46
VPS9D1Q9Y2B5 AC117402.1-202ENST00000383686 820 ntTSL 2 BASIC5.95□□□□□ -1.46
VPS9D1Q9Y2B5 RNU6-968P-201ENST00000384076 107 ntBASIC5.95□□□□□ -1.46
VPS9D1Q9Y2B5 U3.22-201ENST00000391120 215 ntBASIC5.95□□□□□ -1.46
VPS9D1Q9Y2B5 MIR1275-201ENST00000408770 80 ntBASIC5.95□□□□□ -1.46
VPS9D1Q9Y2B5 RNY4P29-201ENST00000410801 97 ntBASIC5.95□□□□□ -1.46
VPS9D1Q9Y2B5 IL1RAP-205ENST00000412504 4875 ntAPPRIS P1 TSL 1 (best) BASIC5.95□□□□□ -1.46
VPS9D1Q9Y2B5 AL137071.1-201ENST00000422150 243 ntTSL 3 BASIC5.95□□□□□ -1.46
VPS9D1Q9Y2B5 BPY2DP-201ENST00000422208 265 ntBASIC5.95□□□□□ -1.46
VPS9D1Q9Y2B5 AL137076.1-201ENST00000441046 551 ntTSL 2 BASIC5.95□□□□□ -1.46
VPS9D1Q9Y2B5 STYX-202ENST00000442123 4554 ntAPPRIS P1 TSL 1 (best) BASIC5.95□□□□□ -1.46
VPS9D1Q9Y2B5 AL035530.1-201ENST00000446887 331 ntTSL 3 BASIC5.95□□□□□ -1.46
VPS9D1Q9Y2B5 AC097463.1-201ENST00000447288 481 ntBASIC5.95□□□□□ -1.46
VPS9D1Q9Y2B5 AL353705.4-201ENST00000449661 238 ntBASIC5.95□□□□□ -1.46
VPS9D1Q9Y2B5 SDC4P-201ENST00000453285 601 ntBASIC5.95□□□□□ -1.46
VPS9D1Q9Y2B5 Y_RNA.677-201ENST00000516401 85 ntBASIC5.95□□□□□ -1.46
VPS9D1Q9Y2B5 RNU6-537P-201ENST00000517277 103 ntBASIC5.95□□□□□ -1.46
VPS9D1Q9Y2B5 AP003327.1-201ENST00000529684 127 ntBASIC5.95□□□□□ -1.46
VPS9D1Q9Y2B5 LINC02350-201ENST00000544419 480 ntTSL 3 BASIC5.95□□□□□ -1.46
VPS9D1Q9Y2B5 BNIP3P5-201ENST00000562290 498 ntBASIC5.95□□□□□ -1.46
VPS9D1Q9Y2B5 AC100821.2-201ENST00000565668 440 ntTSL 2 BASIC5.95□□□□□ -1.46
VPS9D1Q9Y2B5 AC079070.1-201ENST00000578740 555 ntTSL 2 BASIC5.95□□□□□ -1.46
VPS9D1Q9Y2B5 MIR3145-201ENST00000580727 82 ntBASIC5.95□□□□□ -1.46
VPS9D1Q9Y2B5 TEX26-AS1-204ENST00000585582 853 ntTSL 5 BASIC5.95□□□□□ -1.46
VPS9D1Q9Y2B5 SV2B-201ENST00000330276 11202 ntAPPRIS P1 TSL 1 (best) BASIC5.95□□□□□ -1.46
VPS9D1Q9Y2B5 OR4E1-202ENST00000641792 3742 ntAPPRIS P5 BASIC5.95□□□□□ -1.46
VPS9D1Q9Y2B5 ARHGAP20-204ENST00000528829 5880 ntAPPRIS ALT2 TSL 1 (best) BASIC5.95□□□□□ -1.46
VPS9D1Q9Y2B5 CYSLTR1-203ENST00000614798 2681 ntAPPRIS P1 TSL 1 (best) BASIC5.95□□□□□ -1.46
VPS9D1Q9Y2B5 RMDN2-204ENST00000406384 1932 ntAPPRIS P1 TSL 1 (best) BASIC5.95□□□□□ -1.46
VPS9D1Q9Y2B5 GABRA2-206ENST00000507460 5812 ntTSL 1 (best) BASIC5.95□□□□□ -1.46
VPS9D1Q9Y2B5 LINC01153-201ENST00000429809 2864 ntTSL 1 (best) BASIC5.95□□□□□ -1.46
VPS9D1Q9Y2B5 RIMS2-209ENST00000507740 8002 ntTSL 1 (best) BASIC5.95□□□□□ -1.46
VPS9D1Q9Y2B5 AC016687.3-202ENST00000505018 2404 ntTSL 1 (best) BASIC5.95□□□□□ -1.46
VPS9D1Q9Y2B5 NOL8-214ENST00000535387 3390 ntAPPRIS ALT2 TSL 5 BASIC5.95□□□□□ -1.46
VPS9D1Q9Y2B5 TLR2-201ENST00000260010 4200 ntAPPRIS P1 BASIC5.94□□□□□ -1.46
VPS9D1Q9Y2B5 MAGEB16-203ENST00000399988 1682 ntAPPRIS P2 TSL 5 BASIC5.94□□□□□ -1.46
VPS9D1Q9Y2B5 NRCAM-210ENST00000425651 3915 ntAPPRIS ALT2 TSL 1 (best) BASIC5.94□□□□□ -1.46
VPS9D1Q9Y2B5 RSF1-204ENST00000480887 5318 ntAPPRIS ALT2 TSL 1 (best) BASIC5.94□□□□□ -1.46
VPS9D1Q9Y2B5 AL121594.3-201ENST00000557565 3857 ntAPPRIS P1 TSL 2 BASIC5.94□□□□□ -1.46
VPS9D1Q9Y2B5 CTTNBP2NL-201ENST00000271277 5897 ntAPPRIS P1 TSL 1 (best) BASIC5.94□□□□□ -1.46
VPS9D1Q9Y2B5 MAPK10-297ENST00000641287 3725 ntAPPRIS P2 BASIC5.94□□□□□ -1.46
VPS9D1Q9Y2B5 AL451142.2-201ENST00000429076 2090 ntBASIC5.94□□□□□ -1.46
VPS9D1Q9Y2B5 AGTR1-206ENST00000474935 1795 ntAPPRIS P1 TSL 3 BASIC5.94□□□□□ -1.46
VPS9D1Q9Y2B5 RAB30-212ENST00000533486 9929 ntAPPRIS P1 TSL 1 (best) BASIC5.94□□□□□ -1.46
VPS9D1Q9Y2B5 UBE2L2-201ENST00000254302 429 ntBASIC5.94□□□□□ -1.46
VPS9D1Q9Y2B5 AL035079.1-201ENST00000405210 287 ntBASIC5.94□□□□□ -1.46
VPS9D1Q9Y2B5 AL158823.1-201ENST00000418441 478 ntBASIC5.94□□□□□ -1.46
VPS9D1Q9Y2B5 AL160004.1-201ENST00000434311 478 ntTSL 3 BASIC5.94□□□□□ -1.46
VPS9D1Q9Y2B5 AC012081.1-201ENST00000462382 477 ntTSL 3 BASIC5.94□□□□□ -1.46
VPS9D1Q9Y2B5 LRRC77P-202ENST00000463642 457 ntTSL 4 BASIC5.94□□□□□ -1.46
VPS9D1Q9Y2B5 AC010451.3-201ENST00000511721 444 ntTSL 3 BASIC5.94□□□□□ -1.46
VPS9D1Q9Y2B5 RNU6-377P-201ENST00000515965 102 ntBASIC5.94□□□□□ -1.46
VPS9D1Q9Y2B5 IGKV1OR22-1-201ENST00000521497 360 ntBASIC5.94□□□□□ -1.46
VPS9D1Q9Y2B5 AC005363.1-201ENST00000530779 351 ntBASIC5.94□□□□□ -1.46
VPS9D1Q9Y2B5 MIR4420-201ENST00000583944 77 ntBASIC5.94□□□□□ -1.46
VPS9D1Q9Y2B5 COX6CP7-201ENST00000597056 208 ntBASIC5.94□□□□□ -1.46
VPS9D1Q9Y2B5 AC234771.5-201ENST00000600161 514 ntBASIC5.94□□□□□ -1.46
VPS9D1Q9Y2B5 AC016747.2-202ENST00000607743 332 ntTSL 5 BASIC5.94□□□□□ -1.46
VPS9D1Q9Y2B5 AC069294.1-201ENST00000608397 350 ntBASIC5.94□□□□□ -1.46
VPS9D1Q9Y2B5 MIR6806-201ENST00000622141 64 ntBASIC5.94□□□□□ -1.46
VPS9D1Q9Y2B5 LINC00969-332ENST00000630874 738 ntTSL 5 BASIC5.94□□□□□ -1.46
VPS9D1Q9Y2B5 LIMA1-212ENST00000552491 2652 ntAPPRIS ALT2 TSL 2 BASIC5.94□□□□□ -1.46
VPS9D1Q9Y2B5 UNC80-203ENST00000439458 13562 ntAPPRIS P1 TSL 5 BASIC5.94□□□□□ -1.46
VPS9D1Q9Y2B5 SPATA1-206ENST00000490879 2888 ntAPPRIS P1 TSL 5 BASIC5.94□□□□□ -1.46
VPS9D1Q9Y2B5 BX664718.1-201ENST00000439824 3224 ntTSL 2 BASIC5.94□□□□□ -1.46
VPS9D1Q9Y2B5 NFE2L2-206ENST00000446151 2399 ntAPPRIS P1 TSL 1 (best) BASIC5.94□□□□□ -1.46
VPS9D1Q9Y2B5 APAF1-208ENST00000549007 3492 ntTSL 1 (best) BASIC5.94□□□□□ -1.46
VPS9D1Q9Y2B5 AFM-201ENST00000226355 2059 ntAPPRIS P1 TSL 1 (best) BASIC5.94□□□□□ -1.46
VPS9D1Q9Y2B5 ANK3-216ENST00000503366 5792 ntAPPRIS ALT2 TSL 2 BASIC5.93□□□□□ -1.46
VPS9D1Q9Y2B5 AC005224.3-201ENST00000584683 2140 ntBASIC5.93□□□□□ -1.46
VPS9D1Q9Y2B5 TCF7L2-217ENST00000536810 3953 ntTSL 1 (best) BASIC5.93□□□□□ -1.46
VPS9D1Q9Y2B5 SPAM1-202ENST00000340011 2349 ntAPPRIS P4 TSL 1 (best) BASIC5.93□□□□□ -1.46
Retrieved 100 of 98,524 protein–RNA pairs in 112.7 ms