Protein–RNA interactions for Protein: P53420

COL4A4, Collagen alpha-4(IV) chain, humanhuman

Predicted RBP Predictions only

Length 1,690 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A4P53420 AC087465.1-201ENST00000560574 245 ntBASIC2.66□□□□□ -1.98
COL4A4P53420 DLGAP1-AS4-201ENST00000582054 757 ntTSL 5 BASIC2.66□□□□□ -1.98
COL4A4P53420 MIR5092-201ENST00000583139 88 ntBASIC2.66□□□□□ -1.98
COL4A4P53420 AC006116.4-201ENST00000589671 452 ntTSL 2 BASIC2.66□□□□□ -1.98
COL4A4P53420 AC072039.2-201ENST00000608883 439 ntBASIC2.66□□□□□ -1.98
COL4A4P53420 AC019131.2-201ENST00000609071 870 ntBASIC2.66□□□□□ -1.98
COL4A4P53420 AC025253.1-201ENST00000613623 543 ntBASIC2.66□□□□□ -1.98
COL4A4P53420 PRKCQ-AS1-213ENST00000613985 883 ntTSL 5 BASIC2.66□□□□□ -1.98
COL4A4P53420 C8orf59-212ENST00000615697 483 ntAPPRIS P1 TSL 2 BASIC2.66□□□□□ -1.98
COL4A4P53420 RMST_10.1-201ENST00000616309 154 ntBASIC2.66□□□□□ -1.98
COL4A4P53420 AC104985.2-201ENST00000620598 500 ntBASIC2.66□□□□□ -1.98
COL4A4P53420 AL359715.4-201ENST00000606629 1436 ntBASIC2.66□□□□□ -1.98
COL4A4P53420 TFEC-201ENST00000265440 6628 ntTSL 1 (best) BASIC2.66□□□□□ -1.98
COL4A4P53420 CPXCR1-201ENST00000276127 1630 ntAPPRIS P1 TSL 1 (best) BASIC2.65□□□□□ -1.98
COL4A4P53420 LINC01021-204ENST00000512067 1610 ntTSL 1 (best) BASIC2.65□□□□□ -1.98
COL4A4P53420 NEB-218ENST00000603639 25578 ntAPPRIS ALT2 TSL 5 BASIC2.65□□□□□ -1.99
COL4A4P53420 NEB-219ENST00000604864 25578 ntAPPRIS ALT2 TSL 5 BASIC2.65□□□□□ -1.99
COL4A4P53420 RNU6-1200P-201ENST00000384162 107 ntBASIC2.65□□□□□ -1.99
COL4A4P53420 Y_RNA.553-201ENST00000384670 102 ntBASIC2.65□□□□□ -1.99
COL4A4P53420 AC092638.1-201ENST00000411966 1275 ntBASIC2.65□□□□□ -1.99
COL4A4P53420 CLYBL-AS1-201ENST00000416009 621 ntTSL 3 BASIC2.65□□□□□ -1.99
COL4A4P53420 TTTY3-201ENST00000417334 344 ntTSL 1 (best) BASIC2.65□□□□□ -1.99
COL4A4P53420 RPL7P53-201ENST00000421245 739 ntBASIC2.65□□□□□ -1.99
COL4A4P53420 RBM6-203ENST00000421682 684 ntTSL 2 BASIC2.65□□□□□ -1.99
COL4A4P53420 MTCO2P34-201ENST00000421994 607 ntBASIC2.65□□□□□ -1.99
COL4A4P53420 CASP3P1-201ENST00000446037 609 ntBASIC2.65□□□□□ -1.99
COL4A4P53420 AL096803.2-201ENST00000450032 677 ntBASIC2.65□□□□□ -1.99
COL4A4P53420 AC004884.2-201ENST00000476569 546 ntTSL 4 BASIC2.65□□□□□ -1.99
COL4A4P53420 RPL36AP51-201ENST00000487216 318 ntBASIC2.65□□□□□ -1.99
COL4A4P53420 GYPA-204ENST00000504786 357 ntTSL 1 (best) BASIC2.65□□□□□ -1.99
COL4A4P53420 NREP-AS1-202ENST00000507222 610 ntTSL 3 BASIC2.65□□□□□ -1.99
COL4A4P53420 AC108471.1-201ENST00000513977 287 ntBASIC2.65□□□□□ -1.99
COL4A4P53420 RNU6-943P-201ENST00000516960 98 ntBASIC2.65□□□□□ -1.99
COL4A4P53420 RGS4-209ENST00000531057 544 ntTSL 4 BASIC2.65□□□□□ -1.99
COL4A4P53420 AC108721.1-201ENST00000547088 348 ntTSL 3 BASIC2.65□□□□□ -1.99
COL4A4P53420 NBEAP1-201ENST00000554452 979 ntBASIC2.65□□□□□ -1.99
COL4A4P53420 AC009269.4-201ENST00000557828 440 ntTSL 3 BASIC2.65□□□□□ -1.99
COL4A4P53420 AC011825.2-201ENST00000583138 553 ntTSL 4 BASIC2.65□□□□□ -1.99
COL4A4P53420 RSL24D1P11-201ENST00000591045 491 ntBASIC2.65□□□□□ -1.99
COL4A4P53420 VN1R81P-201ENST00000602085 372 ntBASIC2.65□□□□□ -1.99
COL4A4P53420 MTCYBP22-201ENST00000603788 447 ntBASIC2.65□□□□□ -1.99
COL4A4P53420 AC242426.3-203ENST00000606757 712 ntTSL 3 BASIC2.65□□□□□ -1.99
COL4A4P53420 AC007038.2-201ENST00000608095 740 ntBASIC2.65□□□□□ -1.99
COL4A4P53420 AC138749.5-201ENST00000611461 208 ntBASIC2.65□□□□□ -1.99
COL4A4P53420 AC073114.1-201ENST00000612027 490 ntBASIC2.65□□□□□ -1.99
COL4A4P53420 AC007014.2-201ENST00000615581 479 ntBASIC2.65□□□□□ -1.99
COL4A4P53420 AL353997.5-201ENST00000618886 171 ntBASIC2.65□□□□□ -1.99
COL4A4P53420 AL356596.1-201ENST00000624230 379 ntBASIC2.65□□□□□ -1.99
COL4A4P53420 TTTY3B-201ENST00000631331 344 ntTSL 1 (best) BASIC2.65□□□□□ -1.99
COL4A4P53420 SENP7-207ENST00000394095 4945 ntAPPRIS P3 TSL 1 (best) BASIC2.65□□□□□ -1.99
COL4A4P53420 EPS15-202ENST00000371730 4736 ntAPPRIS ALT2 TSL 1 (best) BASIC2.65□□□□□ -1.99
COL4A4P53420 OXR1-207ENST00000497705 2007 ntTSL 2 BASIC2.65□□□□□ -1.99
COL4A4P53420 NEDD4-205ENST00000506154 6751 ntTSL 1 (best) BASIC2.64□□□□□ -1.99
COL4A4P53420 FBXL13-204ENST00000436908 2577 ntTSL 5 BASIC2.64□□□□□ -1.99
COL4A4P53420 RPL21P132-201ENST00000331267 462 ntBASIC2.64□□□□□ -1.99
COL4A4P53420 RNU6-697P-201ENST00000363348 107 ntBASIC2.64□□□□□ -1.99
COL4A4P53420 SNORD56.4-201ENST00000363883 71 ntBASIC2.64□□□□□ -1.99
COL4A4P53420 MT-TH-201ENST00000387441 69 ntBASIC2.64□□□□□ -1.99
COL4A4P53420 DEFB108C-201ENST00000400154 252 ntBASIC2.64□□□□□ -1.99
COL4A4P53420 Y_RNA.595-201ENST00000410403 105 ntBASIC2.64□□□□□ -1.99
COL4A4P53420 RNU2-66P-201ENST00000410650 161 ntBASIC2.64□□□□□ -1.99
COL4A4P53420 RNU4-74P-201ENST00000411280 161 ntBASIC2.64□□□□□ -1.99
COL4A4P53420 USP9YP33-201ENST00000412220 421 ntBASIC2.64□□□□□ -1.99
COL4A4P53420 AC007064.1-201ENST00000412238 351 ntBASIC2.64□□□□□ -1.99
COL4A4P53420 OR51A5P-201ENST00000415429 942 ntBASIC2.64□□□□□ -1.99
COL4A4P53420 EIF1P1-201ENST00000421436 341 ntBASIC2.64□□□□□ -1.99
COL4A4P53420 AL357375.1-201ENST00000424274 525 ntTSL 3 BASIC2.64□□□□□ -1.99
COL4A4P53420 AC119800.1-201ENST00000429871 423 ntTSL 2 BASIC2.64□□□□□ -1.99
COL4A4P53420 AL354941.1-201ENST00000438600 464 ntBASIC2.64□□□□□ -1.99
COL4A4P53420 AP002512.3-201ENST00000440231 985 ntAPPRIS P1 BASIC2.64□□□□□ -1.99
COL4A4P53420 MTCO1P19-201ENST00000443487 500 ntBASIC2.64□□□□□ -1.99
COL4A4P53420 AC007327.1-201ENST00000447461 264 ntBASIC2.64□□□□□ -1.99
COL4A4P53420 BUD31P2-201ENST00000449374 300 ntBASIC2.64□□□□□ -1.99
COL4A4P53420 OR51B8P-201ENST00000449892 769 ntBASIC2.64□□□□□ -1.99
COL4A4P53420 CFTRP1-201ENST00000456646 183 ntBASIC2.64□□□□□ -1.99
COL4A4P53420 AC092045.1-201ENST00000495716 1231 ntBASIC2.64□□□□□ -1.99
COL4A4P53420 C4orf33-204ENST00000502887 1126 ntTSL 1 (best) BASIC2.64□□□□□ -1.99
COL4A4P53420 AC104137.1-201ENST00000503625 385 ntTSL 3 BASIC2.64□□□□□ -1.99
COL4A4P53420 BMPR1B-AS1-201ENST00000510795 511 ntTSL 3 BASIC2.64□□□□□ -1.99
COL4A4P53420 AC079140.3-201ENST00000511111 550 ntBASIC2.64□□□□□ -1.99
COL4A4P53420 RN7SKP219-201ENST00000516825 296 ntBASIC2.64□□□□□ -1.99
COL4A4P53420 AC090857.2-201ENST00000526362 723 ntTSL 2 BASIC2.64□□□□□ -1.99
COL4A4P53420 PAFAH1B2-206ENST00000530272 850 ntTSL 1 (best) BASIC2.64□□□□□ -1.99
COL4A4P53420 ADI1P3-201ENST00000549509 470 ntBASIC2.64□□□□□ -1.99
COL4A4P53420 LINC02328-203ENST00000557195 682 ntTSL 3 BASIC2.64□□□□□ -1.99
COL4A4P53420 MIR4498-201ENST00000577599 66 ntBASIC2.64□□□□□ -1.99
COL4A4P53420 AC103810.2-203ENST00000584959 631 ntTSL 5 BASIC2.64□□□□□ -1.99
COL4A4P53420 AP005230.1-201ENST00000585072 675 ntTSL 5 BASIC2.64□□□□□ -1.99
COL4A4P53420 AC091132.5-204ENST00000586348 630 ntTSL 3 BASIC2.64□□□□□ -1.99
COL4A4P53420 AC123768.4-201ENST00000616244 701 ntBASIC2.64□□□□□ -1.99
COL4A4P53420 INPP4B-223ENST00000630044 354 ntTSL 5 BASIC2.64□□□□□ -1.99
COL4A4P53420 ZNF663P-202ENST00000641770 1131 ntBASIC2.64□□□□□ -1.99
COL4A4P53420 ALG6-201ENST00000263440 1895 ntAPPRIS ALT1 TSL 5 BASIC2.64□□□□□ -1.99
COL4A4P53420 LINC00643-201ENST00000334389 3247 ntTSL 2 BASIC2.64□□□□□ -1.99
COL4A4P53420 AL021368.2-201ENST00000606125 5352 ntBASIC2.64□□□□□ -1.99
COL4A4P53420 SGO1P2-201ENST00000429458 1589 ntBASIC2.64□□□□□ -1.99
COL4A4P53420 TFEC-202ENST00000320239 6605 ntAPPRIS P1 TSL 1 (best) BASIC2.64□□□□□ -1.99
COL4A4P53420 HELZ-201ENST00000358691 13810 ntTSL 1 (best) BASIC2.64□□□□□ -1.99
COL4A4P53420 SULT1E1-201ENST00000226444 1780 ntAPPRIS P1 TSL 1 (best) BASIC2.64□□□□□ -1.99
COL4A4P53420 KNL1-204ENST00000527044 5404 ntTSL 5 BASIC2.64□□□□□ -1.99
Retrieved 100 of 98,524 protein–RNA pairs in 104.3 ms