Protein–RNA interactions for Protein: P22670

RFX1, MHC class II regulatory factor RFX1, humanhuman

Predictions only

Length 979 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RFX1P22670 RNU4-6P-201ENST00000410804 122 ntBASIC5.62□□□□□ -1.51
RFX1P22670 AC083867.1-201ENST00000413567 457 ntTSL 3 BASIC5.62□□□□□ -1.51
RFX1P22670 AC079790.1-201ENST00000420365 507 ntTSL 3 BASIC5.62□□□□□ -1.51
RFX1P22670 GNG5P5-201ENST00000420444 220 ntBASIC5.62□□□□□ -1.51
RFX1P22670 MTCYBP10-201ENST00000424905 650 ntBASIC5.62□□□□□ -1.51
RFX1P22670 USP9YP30-201ENST00000430729 455 ntBASIC5.62□□□□□ -1.51
RFX1P22670 LINC00280-201ENST00000439525 448 ntTSL 2 BASIC5.62□□□□□ -1.51
RFX1P22670 RPS24P13-201ENST00000442520 397 ntBASIC5.62□□□□□ -1.51
RFX1P22670 LINC01210-201ENST00000465283 625 ntTSL 2 BASIC5.62□□□□□ -1.51
RFX1P22670 AC092059.1-201ENST00000485347 429 ntTSL 3 BASIC5.62□□□□□ -1.51
RFX1P22670 DEFB109F-201ENST00000491870 277 ntBASIC5.62□□□□□ -1.51
RFX1P22670 SUMO2P6-201ENST00000505273 288 ntBASIC5.62□□□□□ -1.51
RFX1P22670 Y_RNA.661-201ENST00000516003 99 ntBASIC5.62□□□□□ -1.51
RFX1P22670 RNU6-764P-201ENST00000516396 105 ntBASIC5.62□□□□□ -1.51
RFX1P22670 SCARNA15.2-201ENST00000516409 127 ntBASIC5.62□□□□□ -1.51
RFX1P22670 AC012400.1-201ENST00000518452 381 ntBASIC5.62□□□□□ -1.51
RFX1P22670 THEM7P-202ENST00000525689 764 ntTSL 3 BASIC5.62□□□□□ -1.51
RFX1P22670 AC023442.3-203ENST00000530946 533 ntTSL 4 BASIC5.62□□□□□ -1.51
RFX1P22670 G2E3-AS1-202ENST00000550118 609 ntTSL 5 BASIC5.62□□□□□ -1.51
RFX1P22670 C16orf97-203ENST00000566314 281 ntTSL 3 BASIC5.62□□□□□ -1.51
RFX1P22670 TVP23CP2-201ENST00000571473 623 ntBASIC5.62□□□□□ -1.51
RFX1P22670 UBL5-207ENST00000590068 390 ntAPPRIS P1 TSL 5 BASIC5.62□□□□□ -1.51
RFX1P22670 AC011494.1-201ENST00000596454 237 ntBASIC5.62□□□□□ -1.51
RFX1P22670 SNRPGP15-201ENST00000600149 222 ntBASIC5.62□□□□□ -1.51
RFX1P22670 AC006006.1-201ENST00000603082 144 ntBASIC5.62□□□□□ -1.51
RFX1P22670 AC006157.1-201ENST00000611750 366 ntBASIC5.62□□□□□ -1.51
RFX1P22670 AC087588.2-201ENST00000617667 426 ntBASIC5.62□□□□□ -1.51
RFX1P22670 SLC38A9-223ENST00000515629 2673 ntTSL 2 BASIC5.62□□□□□ -1.51
RFX1P22670 ZNF207-203ENST00000394670 13781 ntAPPRIS ALT1 TSL 1 (best) BASIC5.62□□□□□ -1.51
RFX1P22670 NUP155-202ENST00000381843 4200 ntTSL 1 (best) BASIC5.62□□□□□ -1.51
RFX1P22670 ZNF682-207ENST00000595736 1710 ntTSL 2 BASIC5.62□□□□□ -1.51
RFX1P22670 ADAM5-202ENST00000399789 1942 ntBASIC5.62□□□□□ -1.51
RFX1P22670 OR5AU1-203ENST00000641697 7755 ntAPPRIS P1 BASIC5.61□□□□□ -1.51
RFX1P22670 ZNF660-201ENST00000322734 5834 ntAPPRIS P1 TSL 2 BASIC5.61□□□□□ -1.51
RFX1P22670 U3.3-201ENST00000362986 216 ntBASIC5.61□□□□□ -1.51
RFX1P22670 RNA5SP90-201ENST00000364801 99 ntBASIC5.61□□□□□ -1.51
RFX1P22670 CFAP126-201ENST00000367974 774 ntAPPRIS P1 TSL 2 BASIC5.61□□□□□ -1.51
RFX1P22670 TEX26-201ENST00000380473 1478 ntAPPRIS P1 TSL 1 (best) BASIC5.61□□□□□ -1.51
RFX1P22670 RNU6-306P-201ENST00000384617 107 ntBASIC5.61□□□□□ -1.51
RFX1P22670 RNU2-3P-201ENST00000410144 191 ntBASIC5.61□□□□□ -1.51
RFX1P22670 AC073311.1-201ENST00000420146 505 ntTSL 5 BASIC5.61□□□□□ -1.51
RFX1P22670 UBE2D3P2-201ENST00000424409 445 ntBASIC5.61□□□□□ -1.51
RFX1P22670 RHOT1P3-201ENST00000436571 331 ntBASIC5.61□□□□□ -1.51
RFX1P22670 AL354949.1-201ENST00000446438 170 ntTSL 2 BASIC5.61□□□□□ -1.51
RFX1P22670 HMGB1P30-201ENST00000492455 606 ntBASIC5.61□□□□□ -1.51
RFX1P22670 AC092994.1-201ENST00000498604 279 ntTSL 3 BASIC5.61□□□□□ -1.51
RFX1P22670 SNCA-AS1-201ENST00000501215 2646 ntTSL 2 BASIC5.61□□□□□ -1.51
RFX1P22670 AC138965.1-202ENST00000502354 547 ntTSL 5 BASIC5.61□□□□□ -1.51
RFX1P22670 AC140125.3-201ENST00000505248 547 ntTSL 4 BASIC5.61□□□□□ -1.51
RFX1P22670 AC110767.1-201ENST00000508374 239 ntTSL 3 BASIC5.61□□□□□ -1.51
RFX1P22670 AC004980.4-201ENST00000513375 203 ntBASIC5.61□□□□□ -1.51
RFX1P22670 RNU6ATAC24P-201ENST00000516811 135 ntBASIC5.61□□□□□ -1.51
RFX1P22670 RNU6-699P-201ENST00000517081 110 ntBASIC5.61□□□□□ -1.51
RFX1P22670 RNU6-1315P-201ENST00000517187 99 ntBASIC5.61□□□□□ -1.51
RFX1P22670 SMG1P3-204ENST00000520823 3194 ntTSL 5 BASIC5.61□□□□□ -1.51
RFX1P22670 ATP5F1P5-201ENST00000526403 760 ntBASIC5.61□□□□□ -1.51
RFX1P22670 AL355095.1-201ENST00000554451 539 ntTSL 2 BASIC5.61□□□□□ -1.51
RFX1P22670 AC010733.2-201ENST00000589496 5702 ntBASIC5.61□□□□□ -1.51
RFX1P22670 AC005014.2-201ENST00000607795 599 ntBASIC5.61□□□□□ -1.51
RFX1P22670 RMST_4.1-201ENST00000616886 107 ntBASIC5.61□□□□□ -1.51
RFX1P22670 AL136964.1-201ENST00000622038 2990 ntBASIC5.61□□□□□ -1.51
RFX1P22670 Z99571.1-201ENST00000636677 394 ntBASIC5.61□□□□□ -1.51
RFX1P22670 PRG4-203ENST00000367485 4765 ntAPPRIS ALT2 TSL 5 BASIC5.61□□□□□ -1.51
RFX1P22670 NBPF10-201ENST00000583866 13042 ntAPPRIS P1 TSL 5 BASIC5.61□□□□□ -1.51
RFX1P22670 MAPK10-328ENST00000641553 4009 ntBASIC5.6□□□□□ -1.51
RFX1P22670 ZNF836-204ENST00000597252 3209 ntAPPRIS P2 TSL 2 BASIC5.6□□□□□ -1.51
RFX1P22670 RASA1-205ENST00000512763 3060 ntAPPRIS ALT2 TSL 2 BASIC5.6□□□□□ -1.51
RFX1P22670 AL161668.1-201ENST00000320322 358 ntTSL 1 (best) BASIC5.6□□□□□ -1.51
RFX1P22670 RNU6-1167P-201ENST00000363227 94 ntBASIC5.6□□□□□ -1.51
RFX1P22670 SNORA41-201ENST00000384675 132 ntBASIC5.6□□□□□ -1.51
RFX1P22670 RNU6-331P-201ENST00000384724 107 ntBASIC5.6□□□□□ -1.51
RFX1P22670 CYCSP33-201ENST00000414485 327 ntBASIC5.6□□□□□ -1.51
RFX1P22670 EI24P1-201ENST00000416584 867 ntBASIC5.6□□□□□ -1.51
RFX1P22670 EI24P4-201ENST00000423683 1078 ntBASIC5.6□□□□□ -1.51
RFX1P22670 C4BPAP2-201ENST00000428434 478 ntBASIC5.6□□□□□ -1.51
RFX1P22670 MTCYBP9-201ENST00000431021 303 ntBASIC5.6□□□□□ -1.51
RFX1P22670 RPS29P10-201ENST00000439197 166 ntBASIC5.6□□□□□ -1.51
RFX1P22670 LINC01594-201ENST00000445083 611 ntTSL 5 BASIC5.6□□□□□ -1.51
RFX1P22670 RPL12P25-201ENST00000455592 494 ntBASIC5.6□□□□□ -1.51
RFX1P22670 RPS20P22-201ENST00000473700 357 ntBASIC5.6□□□□□ -1.51
RFX1P22670 RPS4XP20-201ENST00000505751 772 ntBASIC5.6□□□□□ -1.51
RFX1P22670 AC069272.1-201ENST00000514843 680 ntTSL 3 BASIC5.6□□□□□ -1.51
RFX1P22670 MTCO2P24-201ENST00000515611 426 ntBASIC5.6□□□□□ -1.51
RFX1P22670 RN7SKP276-201ENST00000516242 268 ntBASIC5.6□□□□□ -1.51
RFX1P22670 SAMD15-202ENST00000533095 412 ntTSL 5 BASIC5.6□□□□□ -1.51
RFX1P22670 AC055720.1-201ENST00000539552 475 ntTSL 5 BASIC5.6□□□□□ -1.51
RFX1P22670 AC091516.1-201ENST00000549191 703 ntBASIC5.6□□□□□ -1.51
RFX1P22670 AL512791.1-201ENST00000555853 300 ntTSL 3 BASIC5.6□□□□□ -1.51
RFX1P22670 AC084882.1-201ENST00000561254 555 ntTSL 4 BASIC5.6□□□□□ -1.51
RFX1P22670 AC002545.1-201ENST00000592511 181 ntBASIC5.6□□□□□ -1.51
RFX1P22670 AC098826.3-201ENST00000603823 466 ntBASIC5.6□□□□□ -1.51
RFX1P22670 LINC02112-205ENST00000606744 236 ntTSL 1 (best) BASIC5.6□□□□□ -1.51
RFX1P22670 LINC01232-203ENST00000625369 576 ntTSL 4 BASIC5.6□□□□□ -1.51
RFX1P22670 ZNF83-203ENST00000541777 3743 ntAPPRIS P1 TSL 1 (best) BASIC5.6□□□□□ -1.51
RFX1P22670 KDM3B-209ENST00000542866 3634 ntTSL 2 BASIC5.6□□□□□ -1.51
RFX1P22670 CCDC121-201ENST00000324364 2342 ntAPPRIS P3 TSL 1 (best) BASIC5.6□□□□□ -1.51
RFX1P22670 AC139769.2-201ENST00000599944 2291 ntTSL 2 BASIC5.6□□□□□ -1.51
RFX1P22670 EDIL3-202ENST00000380138 4244 ntTSL 1 (best) BASIC5.6□□□□□ -1.51
RFX1P22670 TFPI-201ENST00000233156 3885 ntAPPRIS P1 TSL 1 (best) BASIC5.6□□□□□ -1.51
RFX1P22670 CLDND1-208ENST00000503004 2818 ntAPPRIS P1 TSL 1 (best) BASIC5.6□□□□□ -1.51
Retrieved 100 of 98,524 protein–RNA pairs in 179.2 ms