Protein–RNA interactions for Protein: Q8VC31

Ccdc9, Coiled-coil domain-containing protein 9, mousemouse

Known RBP Predictions only

Length 543 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ccdc9Q8VC31 Arl11-202ENSMUST00000224727 2095 ntAPPRIS P1 BASIC19.69■□□□□ 0.74
Ccdc9Q8VC31 Kcnq2-204ENSMUST00000103047 2899 ntTSL 1 (best) BASIC19.69■□□□□ 0.74
Ccdc9Q8VC31 B4galt7-201ENSMUST00000064701 2130 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
Ccdc9Q8VC31 Myod1-201ENSMUST00000072514 1861 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
Ccdc9Q8VC31 Mrps35-201ENSMUST00000036111 4162 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
Ccdc9Q8VC31 Gpr137b-ps-203ENSMUST00000220758 1942 ntTSL 1 (best) BASIC19.68■□□□□ 0.74
Ccdc9Q8VC31 Kif9-204ENSMUST00000198043 2233 ntTSL 1 (best) BASIC19.68■□□□□ 0.74
Ccdc9Q8VC31 Hoxd12-201ENSMUST00000001878 2534 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
Ccdc9Q8VC31 Gm42473-201ENSMUST00000201056 2291 ntBASIC19.68■□□□□ 0.74
Ccdc9Q8VC31 C2cd2-201ENSMUST00000170757 6555 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
Ccdc9Q8VC31 Tcf3-210ENSMUST00000105346 2839 ntAPPRIS ALT2 TSL 1 (best) BASIC19.68■□□□□ 0.74
Ccdc9Q8VC31 Setdb2-202ENSMUST00000111253 1774 ntTSL 2 BASIC19.68■□□□□ 0.74
Ccdc9Q8VC31 Scn1b-203ENSMUST00000211945 1501 ntAPPRIS P1 TSL 5 BASIC19.68■□□□□ 0.74
Ccdc9Q8VC31 1810059C17Rik-201ENSMUST00000125173 487 ntTSL 1 (best) BASIC19.68■□□□□ 0.74
Ccdc9Q8VC31 Mpc1-208ENSMUST00000155364 958 ntAPPRIS P1 TSL 2 BASIC19.68■□□□□ 0.74
Ccdc9Q8VC31 Prcd-205ENSMUST00000178875 1227 ntTSL 5 BASIC19.68■□□□□ 0.74
Ccdc9Q8VC31 Slc37a3-211ENSMUST00000202749 434 ntTSL 5 BASIC19.68■□□□□ 0.74
Ccdc9Q8VC31 Serbp1-216ENSMUST00000205106 1288 ntTSL 5 BASIC19.68■□□□□ 0.74
Ccdc9Q8VC31 Fam228b-205ENSMUST00000218575 1281 ntAPPRIS ALT2 TSL 2 BASIC19.68■□□□□ 0.74
Ccdc9Q8VC31 Pstk-201ENSMUST00000075610 1135 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
Ccdc9Q8VC31 Wdr45-201ENSMUST00000043045 1609 ntAPPRIS P2 TSL 1 (best) BASIC19.68■□□□□ 0.74
Ccdc9Q8VC31 Aire-204ENSMUST00000128241 1938 ntAPPRIS P3 TSL 1 (best) BASIC19.68■□□□□ 0.74
Ccdc9Q8VC31 Aire-205ENSMUST00000130972 1923 ntAPPRIS ALT2 TSL 1 (best) BASIC19.68■□□□□ 0.74
Ccdc9Q8VC31 Aire-201ENSMUST00000019257 1926 ntAPPRIS ALT2 TSL 1 (best) BASIC19.68■□□□□ 0.74
Ccdc9Q8VC31 Trappc12-203ENSMUST00000170994 2818 ntTSL 1 (best) BASIC19.68■□□□□ 0.74
Ccdc9Q8VC31 Tmem196-201ENSMUST00000058644 1678 ntAPPRIS P1 TSL 5 BASIC19.68■□□□□ 0.74
Ccdc9Q8VC31 Prdm4-201ENSMUST00000037646 3877 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
Ccdc9Q8VC31 Adam11-201ENSMUST00000068150 5102 ntAPPRIS ALT2 TSL 1 (best) BASIC19.68■□□□□ 0.74
Ccdc9Q8VC31 Fosl1-201ENSMUST00000025850 1707 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
Ccdc9Q8VC31 Cadps2-206ENSMUST00000115361 4571 ntAPPRIS ALT2 TSL 1 (best) BASIC19.68■□□□□ 0.74
Ccdc9Q8VC31 Gm45605-201ENSMUST00000210265 4269 ntBASIC19.68■□□□□ 0.74
Ccdc9Q8VC31 Nfix-201ENSMUST00000076715 1403 ntTSL 1 (best) BASIC19.68■□□□□ 0.74
Ccdc9Q8VC31 Tnfaip8l1-201ENSMUST00000077788 2379 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
Ccdc9Q8VC31 Diras2-201ENSMUST00000057442 4786 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
Ccdc9Q8VC31 Dnajc28-201ENSMUST00000049244 1891 ntAPPRIS ALT2 TSL 1 (best) BASIC19.67■□□□□ 0.74
Ccdc9Q8VC31 Lhx3-201ENSMUST00000028302 2223 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
Ccdc9Q8VC31 Vash1-201ENSMUST00000021681 2599 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
Ccdc9Q8VC31 Grik5-201ENSMUST00000003468 3763 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
Ccdc9Q8VC31 Knstrn-202ENSMUST00000110842 925 ntAPPRIS ALT2 TSL 3 BASIC19.67■□□□□ 0.74
Ccdc9Q8VC31 Dlx6-203ENSMUST00000171311 1071 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
Ccdc9Q8VC31 1700012B09Rik-204ENSMUST00000191047 654 ntAPPRIS ALT2 TSL 3 BASIC19.67■□□□□ 0.74
Ccdc9Q8VC31 Kif7-203ENSMUST00000183846 4577 ntAPPRIS ALT2 TSL 5 BASIC19.67■□□□□ 0.74
Ccdc9Q8VC31 Kmt5b-213ENSMUST00000176262 3933 ntAPPRIS P3 TSL 5 BASIC19.67■□□□□ 0.74
Ccdc9Q8VC31 Klhl42-201ENSMUST00000036003 6267 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
Ccdc9Q8VC31 Steap2-202ENSMUST00000115424 3285 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
Ccdc9Q8VC31 Slc43a1-202ENSMUST00000111624 2556 ntAPPRIS ALT2 TSL 1 (best) BASIC19.67■□□□□ 0.74
Ccdc9Q8VC31 Hook2-201ENSMUST00000064495 2580 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
Ccdc9Q8VC31 Cxcr5-201ENSMUST00000062215 2614 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
Ccdc9Q8VC31 Slc6a9-201ENSMUST00000030269 3479 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
Ccdc9Q8VC31 Chd3-201ENSMUST00000092971 6066 ntAPPRIS ALT2 TSL 5 BASIC19.67■□□□□ 0.74
Ccdc9Q8VC31 Mlf2-201ENSMUST00000032214 1451 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
Ccdc9Q8VC31 Fgfr1op2-203ENSMUST00000067404 2766 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
Ccdc9Q8VC31 Cntfr-204ENSMUST00000102962 1926 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
Ccdc9Q8VC31 Rhot1-203ENSMUST00000077451 3297 ntAPPRIS ALT2 TSL 5 BASIC19.66■□□□□ 0.74
Ccdc9Q8VC31 Degs1-201ENSMUST00000035295 2048 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
Ccdc9Q8VC31 Dand5-201ENSMUST00000065539 1584 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
Ccdc9Q8VC31 Pnkp-202ENSMUST00000098478 1550 ntTSL 1 (best) BASIC19.66■□□□□ 0.74
Ccdc9Q8VC31 Zfp12-201ENSMUST00000032591 5265 ntAPPRIS ALT2 TSL 1 (best) BASIC19.66■□□□□ 0.74
Ccdc9Q8VC31 St8sia2-201ENSMUST00000026896 5368 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
Ccdc9Q8VC31 Txnrd1-206ENSMUST00000219442 3531 ntAPPRIS P1 TSL 5 BASIC19.66■□□□□ 0.74
Ccdc9Q8VC31 Mst1-204ENSMUST00000162886 2209 ntAPPRIS ALT2 TSL 5 BASIC19.66■□□□□ 0.74
Ccdc9Q8VC31 Gm18284-201ENSMUST00000172604 624 ntBASIC19.66■□□□□ 0.74
Ccdc9Q8VC31 Gm45121-201ENSMUST00000205396 1153 ntTSL 5 BASIC19.66■□□□□ 0.74
Ccdc9Q8VC31 Dhx16-201ENSMUST00000025292 3351 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
Ccdc9Q8VC31 Pak4-202ENSMUST00000108283 2899 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
Ccdc9Q8VC31 Prss8-201ENSMUST00000032988 1852 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
Ccdc9Q8VC31 Pick1-202ENSMUST00000053926 2415 ntTSL 1 (best) BASIC19.66■□□□□ 0.74
Ccdc9Q8VC31 Las1l-202ENSMUST00000113864 2581 ntAPPRIS ALT2 TSL 5 BASIC19.66■□□□□ 0.74
Ccdc9Q8VC31 Osr1-201ENSMUST00000057021 2012 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
Ccdc9Q8VC31 Nfs1-201ENSMUST00000029147 2051 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
Ccdc9Q8VC31 Upf1-202ENSMUST00000215817 4518 ntAPPRIS ALT2 TSL 1 (best) BASIC19.66■□□□□ 0.74
Ccdc9Q8VC31 Ndufs2-202ENSMUST00000111318 1545 ntTSL 5 BASIC19.66■□□□□ 0.74
Ccdc9Q8VC31 Tprn-201ENSMUST00000114336 2787 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
Ccdc9Q8VC31 Gpr88-201ENSMUST00000090473 3469 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
Ccdc9Q8VC31 Tpbg-201ENSMUST00000006559 3603 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
Ccdc9Q8VC31 Gpd1l-204ENSMUST00000146623 4391 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
Ccdc9Q8VC31 Pi4k2a-201ENSMUST00000066778 3771 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
Ccdc9Q8VC31 Irak1-205ENSMUST00000114353 1896 ntAPPRIS ALT2 TSL 5 BASIC19.65■□□□□ 0.74
Ccdc9Q8VC31 Pid1-201ENSMUST00000168574 2664 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
Ccdc9Q8VC31 Uncx-202ENSMUST00000174792 1196 ntTSL 1 (best) BASIC19.65■□□□□ 0.74
Ccdc9Q8VC31 Rasl10b-201ENSMUST00000021022 996 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
Ccdc9Q8VC31 Gm5874-201ENSMUST00000096101 508 ntBASIC19.65■□□□□ 0.74
Ccdc9Q8VC31 Synrg-201ENSMUST00000049714 3995 ntAPPRIS ALT2 TSL 5 BASIC19.65■□□□□ 0.74
Ccdc9Q8VC31 Lhfpl3-202ENSMUST00000197992 3115 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
Ccdc9Q8VC31 Slc12a5-201ENSMUST00000099092 6028 ntAPPRIS P2 TSL 1 (best) BASIC19.65■□□□□ 0.74
Ccdc9Q8VC31 Acss1-201ENSMUST00000028944 3618 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
Ccdc9Q8VC31 Gldn-201ENSMUST00000056740 4658 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
Ccdc9Q8VC31 Sfr1-201ENSMUST00000099353 1583 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
Ccdc9Q8VC31 AC167013.2-201ENSMUST00000228520 2684 ntBASIC19.65■□□□□ 0.74
Ccdc9Q8VC31 Bmper-201ENSMUST00000071982 3791 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
Ccdc9Q8VC31 Enoph1-202ENSMUST00000169390 1833 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
Ccdc9Q8VC31 Nupr1l-201ENSMUST00000178355 1827 ntAPPRIS P1 BASIC19.65■□□□□ 0.74
Ccdc9Q8VC31 Zfp668-204ENSMUST00000106263 3132 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
Ccdc9Q8VC31 Atf3-201ENSMUST00000027941 1984 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.74
Ccdc9Q8VC31 Smim3-201ENSMUST00000042710 1984 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.74
Ccdc9Q8VC31 Tulp3-201ENSMUST00000001562 3374 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.74
Ccdc9Q8VC31 Aptx-202ENSMUST00000068125 5383 ntAPPRIS P4 TSL 1 (best) BASIC19.64■□□□□ 0.74
Ccdc9Q8VC31 Jup-202ENSMUST00000107403 2386 ntAPPRIS P1 TSL 5 BASIC19.64■□□□□ 0.74
Ccdc9Q8VC31 Sorbs3-204ENSMUST00000227929 2460 ntBASIC19.64■□□□□ 0.74
Ccdc9Q8VC31 Rprd1a-201ENSMUST00000046206 4297 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
Retrieved 100 of 76,532 protein–RNA pairs in 63.6 ms