Protein–RNA interactions for Protein: Q62318

Trim28, Transcription intermediary factor 1-beta, mousemouse

Predictions only

Length 834 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim28Q62318 Gm11750-201ENSMUST00000146016 583 ntTSL 5 BASIC21.09■□□□□ 0.97
Trim28Q62318 1700039E22Rik-201ENSMUST00000174082 770 ntTSL 1 (best) BASIC21.09■□□□□ 0.97
Trim28Q62318 Urah-204ENSMUST00000185612 716 ntAPPRIS P3 TSL 3 BASIC21.09■□□□□ 0.97
Trim28Q62318 Urah-207ENSMUST00000211372 688 ntAPPRIS P3 TSL 2 BASIC21.09■□□□□ 0.97
Trim28Q62318 Urah-201ENSMUST00000026554 890 ntAPPRIS P3 TSL 1 (best) BASIC21.09■□□□□ 0.97
Trim28Q62318 Hist1h3g-201ENSMUST00000080859 530 ntAPPRIS P1 BASIC21.09■□□□□ 0.97
Trim28Q62318 Gm14066-201ENSMUST00000134801 2057 ntTSL 1 (best) BASIC21.09■□□□□ 0.97
Trim28Q62318 Taf6l-206ENSMUST00000176610 2203 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
Trim28Q62318 Dap3-202ENSMUST00000107491 1375 ntTSL 1 (best) BASIC21.09■□□□□ 0.97
Trim28Q62318 Rab34-201ENSMUST00000002128 1368 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
Trim28Q62318 Ak5-201ENSMUST00000045262 3323 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.97
Trim28Q62318 Cops7b-201ENSMUST00000027446 2231 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.97
Trim28Q62318 Rps6ka1-202ENSMUST00000105894 3135 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.97
Trim28Q62318 Sec22b-202ENSMUST00000122288 1177 ntTSL 1 (best) BASIC21.08■□□□□ 0.97
Trim28Q62318 Gm13962-201ENSMUST00000131512 611 ntTSL 5 BASIC21.08■□□□□ 0.97
Trim28Q62318 Cdpf1-203ENSMUST00000134631 786 ntAPPRIS P1 TSL 5 BASIC21.08■□□□□ 0.97
Trim28Q62318 Gm26904-201ENSMUST00000181301 1742 ntTSL 5 BASIC21.08■□□□□ 0.97
Trim28Q62318 Gm27646-201ENSMUST00000183989 110 ntBASIC21.08■□□□□ 0.97
Trim28Q62318 Sf3b6-201ENSMUST00000046207 1180 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.97
Trim28Q62318 Lias-202ENSMUST00000122026 1668 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.96
Trim28Q62318 Asph-210ENSMUST00000108337 2836 ntTSL 1 (best) BASIC21.08■□□□□ 0.96
Trim28Q62318 Nfib-204ENSMUST00000107246 3075 ntTSL 1 (best) BASIC21.08■□□□□ 0.96
Trim28Q62318 Zfp42-202ENSMUST00000209356 1744 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
Trim28Q62318 Rgs7-203ENSMUST00000192227 2113 ntAPPRIS P3 TSL 1 (best) BASIC21.07■□□□□ 0.96
Trim28Q62318 Kcnt1-203ENSMUST00000114172 5219 ntAPPRIS ALT2 TSL 1 (best) BASIC21.07■□□□□ 0.96
Trim28Q62318 Gm15173-201ENSMUST00000122049 433 ntBASIC21.07■□□□□ 0.96
Trim28Q62318 Gm6550-201ENSMUST00000187574 993 ntBASIC21.07■□□□□ 0.96
Trim28Q62318 D530033B14Rik-201ENSMUST00000205412 546 ntTSL 5 BASIC21.07■□□□□ 0.96
Trim28Q62318 Pih1d1-206ENSMUST00000210139 1077 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
Trim28Q62318 Pts-206ENSMUST00000214873 511 ntTSL 5 BASIC21.07■□□□□ 0.96
Trim28Q62318 AC117588.1-201ENSMUST00000228510 999 ntBASIC21.07■□□□□ 0.96
Trim28Q62318 Traf2-202ENSMUST00000114234 2151 ntAPPRIS ALT2 TSL 5 BASIC21.07■□□□□ 0.96
Trim28Q62318 Pick1-202ENSMUST00000053926 2415 ntTSL 1 (best) BASIC21.07■□□□□ 0.96
Trim28Q62318 Tmem116-203ENSMUST00000094357 1366 ntAPPRIS ALT2 TSL 5 BASIC21.07■□□□□ 0.96
Trim28Q62318 Rala-201ENSMUST00000009003 2688 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
Trim28Q62318 Nptxr-201ENSMUST00000023057 5004 ntAPPRIS ALT2 TSL 1 (best) BASIC21.06■□□□□ 0.96
Trim28Q62318 Grk6-201ENSMUST00000001115 2994 ntAPPRIS ALT2 TSL 1 (best) BASIC21.06■□□□□ 0.96
Trim28Q62318 Gm3928-201ENSMUST00000121141 1307 ntBASIC21.06■□□□□ 0.96
Trim28Q62318 Irgc1-204ENSMUST00000205776 1835 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
Trim28Q62318 Fmnl2-201ENSMUST00000049483 5461 ntTSL 5 BASIC21.06■□□□□ 0.96
Trim28Q62318 Plekha4-202ENSMUST00000209517 2577 ntAPPRIS P2 TSL 5 BASIC21.06■□□□□ 0.96
Trim28Q62318 Zfand5-201ENSMUST00000025659 2834 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
Trim28Q62318 Mrgprf-202ENSMUST00000117718 1935 ntTSL 1 (best) BASIC21.06■□□□□ 0.96
Trim28Q62318 Nptx2-201ENSMUST00000071782 2536 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
Trim28Q62318 Taz-202ENSMUST00000114180 1786 ntAPPRIS ALT1 TSL 5 BASIC21.06■□□□□ 0.96
Trim28Q62318 Arl4a-201ENSMUST00000101472 1200 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
Trim28Q62318 Nat8b-ps-201ENSMUST00000162660 699 ntBASIC21.06■□□□□ 0.96
Trim28Q62318 Mfap2-203ENSMUST00000166376 890 ntAPPRIS P1 TSL 2 BASIC21.06■□□□□ 0.96
Trim28Q62318 Csrp2-207ENSMUST00000220409 780 ntTSL 2 BASIC21.06■□□□□ 0.96
Trim28Q62318 AV026068-213ENSMUST00000223675 1171 ntBASIC21.06■□□□□ 0.96
Trim28Q62318 Anp32a-201ENSMUST00000085519 2113 ntAPPRIS P2 TSL 1 (best) BASIC21.06■□□□□ 0.96
Trim28Q62318 Tasp1-201ENSMUST00000046656 2480 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
Trim28Q62318 Smad1-202ENSMUST00000066091 3099 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
Trim28Q62318 Itm2c-201ENSMUST00000027425 2230 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
Trim28Q62318 Gm28111-201ENSMUST00000187786 1393 ntTSL 1 (best) BASIC21.06■□□□□ 0.96
Trim28Q62318 Dennd2a-201ENSMUST00000036877 4468 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
Trim28Q62318 Kansl1l-201ENSMUST00000068168 4459 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
Trim28Q62318 Fiz1-208ENSMUST00000208944 2306 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
Trim28Q62318 Hmgb3-204ENSMUST00000114582 1743 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
Trim28Q62318 Sept8-207ENSMUST00000147912 1742 ntAPPRIS ALT2 TSL 5 BASIC21.06■□□□□ 0.96
Trim28Q62318 Hmgb3-203ENSMUST00000088874 1728 ntAPPRIS P1 TSL 2 BASIC21.06■□□□□ 0.96
Trim28Q62318 Prr14-201ENSMUST00000033095 2402 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
Trim28Q62318 Gm26613-201ENSMUST00000180919 1457 ntTSL 1 (best) BASIC21.06■□□□□ 0.96
Trim28Q62318 Tpm2-201ENSMUST00000030184 2175 ntTSL 5 BASIC21.06■□□□□ 0.96
Trim28Q62318 Susd1-202ENSMUST00000107544 3220 ntAPPRIS ALT2 TSL 5 BASIC21.06■□□□□ 0.96
Trim28Q62318 Ercc6l2-202ENSMUST00000021926 1592 ntTSL 1 (best) BASIC21.06■□□□□ 0.96
Trim28Q62318 Gipc2-201ENSMUST00000046614 1596 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
Trim28Q62318 Gusb-203ENSMUST00000111308 2038 ntTSL 1 (best) BASIC21.05■□□□□ 0.96
Trim28Q62318 Fars2-205ENSMUST00000224241 1665 ntAPPRIS P1 BASIC21.05■□□□□ 0.96
Trim28Q62318 Zfp862-ps-203ENSMUST00000203848 1776 ntTSL 1 (best) BASIC21.05■□□□□ 0.96
Trim28Q62318 Arntl-203ENSMUST00000210074 2554 ntTSL 1 (best) BASIC21.05■□□□□ 0.96
Trim28Q62318 Fnbp1-204ENSMUST00000100208 1859 ntTSL 5 BASIC21.05■□□□□ 0.96
Trim28Q62318 Sept9-201ENSMUST00000019038 3784 ntAPPRIS ALT2 TSL 1 (best) BASIC21.05■□□□□ 0.96
Trim28Q62318 Timm23-206ENSMUST00000170331 777 ntTSL 3 BASIC21.05■□□□□ 0.96
Trim28Q62318 Hsd3b2-203ENSMUST00000177651 1122 ntAPPRIS P1 TSL 5 BASIC21.05■□□□□ 0.96
Trim28Q62318 Gm18206-201ENSMUST00000207027 926 ntBASIC21.05■□□□□ 0.96
Trim28Q62318 Zfp524-202ENSMUST00000207901 1263 ntAPPRIS P1 TSL 5 BASIC21.05■□□□□ 0.96
Trim28Q62318 4930428E07Rik-201ENSMUST00000222132 920 ntTSL 1 (best) BASIC21.05■□□□□ 0.96
Trim28Q62318 Klk14-201ENSMUST00000056329 1271 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
Trim28Q62318 Ifi27-204ENSMUST00000079294 963 ntAPPRIS ALT2 TSL 1 (best) BASIC21.05■□□□□ 0.96
Trim28Q62318 T-201ENSMUST00000074667 2046 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
Trim28Q62318 Gm45774-201ENSMUST00000211992 2665 ntBASIC21.05■□□□□ 0.96
Trim28Q62318 Tmem214-201ENSMUST00000114716 2220 ntAPPRIS ALT2 TSL 5 BASIC21.05■□□□□ 0.96
Trim28Q62318 Pofut1-204ENSMUST00000109794 1688 ntTSL 5 BASIC21.05■□□□□ 0.96
Trim28Q62318 Ddx39-201ENSMUST00000019576 1656 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
Trim28Q62318 Gsx2-201ENSMUST00000040477 1665 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
Trim28Q62318 Mzf1-202ENSMUST00000182087 2197 ntTSL 1 (best) BASIC21.04■□□□□ 0.96
Trim28Q62318 Hoxc9-201ENSMUST00000001706 2374 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
Trim28Q62318 Epn1-202ENSMUST00000098845 2565 ntAPPRIS P2 TSL 1 (best) BASIC21.04■□□□□ 0.96
Trim28Q62318 Ankrd16-201ENSMUST00000056108 1618 ntAPPRIS P1 TSL 5 BASIC21.04■□□□□ 0.96
Trim28Q62318 Dnajc24-201ENSMUST00000102555 1197 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
Trim28Q62318 Gm5712-201ENSMUST00000199748 1043 ntBASIC21.04■□□□□ 0.96
Trim28Q62318 Zfp930-203ENSMUST00000212312 493 ntTSL 2 BASIC21.04■□□□□ 0.96
Trim28Q62318 Rhebl1-201ENSMUST00000024518 1185 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
Trim28Q62318 Snx11-202ENSMUST00000107661 2197 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
Trim28Q62318 Chst8-201ENSMUST00000078686 2372 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
Trim28Q62318 Lrrc24-202ENSMUST00000049956 1904 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
Trim28Q62318 Bpifb5-201ENSMUST00000045959 1637 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
Trim28Q62318 4933434E20Rik-203ENSMUST00000068798 1500 ntTSL 5 BASIC21.04■□□□□ 0.96
Trim28Q62318 Clasrp-201ENSMUST00000086041 2180 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
Retrieved 100 of 76,532 protein–RNA pairs in 30.5 ms