Protein–RNA interactions for Protein: Q5R1E6

Trav6-3, T cell receptor alpha variable 6-3 (Fragment), mousemouse

Predictions only

Length 112 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trav6-3Q5R1E6 Gm29707-201ENSMUST00000196325 491 ntBASIC13.09□□□□□ -0.31
Trav6-3Q5R1E6 Smim15-206ENSMUST00000226042 1092 ntAPPRIS P1 BASIC13.09□□□□□ -0.31
Trav6-3Q5R1E6 Mccc1-201ENSMUST00000029259 2455 ntAPPRIS P1 TSL 1 (best) BASIC13.09□□□□□ -0.31
Trav6-3Q5R1E6 Mrm2-201ENSMUST00000031536 1443 ntAPPRIS P1 TSL 1 (best) BASIC13.09□□□□□ -0.31
Trav6-3Q5R1E6 Shank3-202ENSMUST00000066545 4702 ntTSL 1 (best) BASIC13.09□□□□□ -0.31
Trav6-3Q5R1E6 Cd40-202ENSMUST00000073707 1596 ntAPPRIS ALT2 TSL 1 (best) BASIC13.09□□□□□ -0.31
Trav6-3Q5R1E6 Gm26762-201ENSMUST00000180864 5284 ntTSL 5 BASIC13.09□□□□□ -0.31
Trav6-3Q5R1E6 Chaf1b-201ENSMUST00000023666 1922 ntAPPRIS P1 TSL 1 (best) BASIC13.09□□□□□ -0.31
Trav6-3Q5R1E6 Rgp1-203ENSMUST00000117140 1635 ntTSL 1 (best) BASIC13.09□□□□□ -0.31
Trav6-3Q5R1E6 Gm26889-201ENSMUST00000181523 2252 ntTSL 5 BASIC13.09□□□□□ -0.31
Trav6-3Q5R1E6 Rnpep-202ENSMUST00000077340 2288 ntAPPRIS P1 TSL 1 (best) BASIC13.09□□□□□ -0.31
Trav6-3Q5R1E6 2210016F16Rik-201ENSMUST00000022032 3051 ntAPPRIS P1 TSL 1 (best) BASIC13.09□□□□□ -0.31
Trav6-3Q5R1E6 CT010478.1-201ENSMUST00000220747 2787 ntBASIC13.09□□□□□ -0.31
Trav6-3Q5R1E6 1700001O22Rik-201ENSMUST00000050003 1672 ntAPPRIS P1 TSL 1 (best) BASIC13.08□□□□□ -0.31
Trav6-3Q5R1E6 Fads3-201ENSMUST00000115995 3269 ntAPPRIS P1 TSL 1 (best) BASIC13.08□□□□□ -0.31
Trav6-3Q5R1E6 Gm26752-201ENSMUST00000181086 1537 ntTSL 1 (best) BASIC13.08□□□□□ -0.31
Trav6-3Q5R1E6 Ggnbp1-201ENSMUST00000053683 1525 ntAPPRIS P3 TSL 1 (best) BASIC13.08□□□□□ -0.31
Trav6-3Q5R1E6 Cfap20-208ENSMUST00000213086 2544 ntTSL 2 BASIC13.08□□□□□ -0.32
Trav6-3Q5R1E6 Atxn7l2-203ENSMUST00000117784 2387 ntAPPRIS P2 TSL 1 (best) BASIC13.08□□□□□ -0.32
Trav6-3Q5R1E6 Pigw-202ENSMUST00000108080 1728 ntAPPRIS P1 TSL 1 (best) BASIC13.08□□□□□ -0.32
Trav6-3Q5R1E6 Wac-215ENSMUST00000171042 2205 ntTSL 1 (best) BASIC13.08□□□□□ -0.32
Trav6-3Q5R1E6 Trim28-201ENSMUST00000005705 3245 ntAPPRIS P1 TSL 1 (best) BASIC13.08□□□□□ -0.32
Trav6-3Q5R1E6 Iqsec1-202ENSMUST00000101153 8036 ntAPPRIS P1 TSL 5 BASIC13.08□□□□□ -0.32
Trav6-3Q5R1E6 4930448E22Rik-201ENSMUST00000181712 1581 ntTSL 1 (best) BASIC13.08□□□□□ -0.32
Trav6-3Q5R1E6 4933436I20Rik-201ENSMUST00000189405 1434 ntTSL 1 (best) BASIC13.08□□□□□ -0.32
Trav6-3Q5R1E6 Gm32996-201ENSMUST00000199828 1447 ntBASIC13.08□□□□□ -0.32
Trav6-3Q5R1E6 Rcc2-201ENSMUST00000038893 3767 ntAPPRIS P1 TSL 1 (best) BASIC13.08□□□□□ -0.32
Trav6-3Q5R1E6 Mfsd4b3-201ENSMUST00000095749 1787 ntAPPRIS P1 TSL 1 (best) BASIC13.08□□□□□ -0.32
Trav6-3Q5R1E6 Nipal3-201ENSMUST00000102549 5153 ntAPPRIS P3 TSL 1 (best) BASIC13.08□□□□□ -0.32
Trav6-3Q5R1E6 Syt8-202ENSMUST00000105976 1289 ntAPPRIS ALT2 TSL 1 (best) BASIC13.08□□□□□ -0.32
Trav6-3Q5R1E6 Syt8-205ENSMUST00000122393 1291 ntAPPRIS ALT2 TSL 1 (best) BASIC13.08□□□□□ -0.32
Trav6-3Q5R1E6 Znhit2-201ENSMUST00000162726 1281 ntAPPRIS P1 BASIC13.08□□□□□ -0.32
Trav6-3Q5R1E6 Gm26938-201ENSMUST00000182839 744 ntAPPRIS P1 TSL 3 BASIC13.08□□□□□ -0.32
Trav6-3Q5R1E6 Gm29994-201ENSMUST00000195495 1193 ntBASIC13.08□□□□□ -0.32
Trav6-3Q5R1E6 D030044L04Rik-201ENSMUST00000204220 1291 ntTSL 1 (best) BASIC13.08□□□□□ -0.32
Trav6-3Q5R1E6 Mrps12-201ENSMUST00000056078 722 ntAPPRIS P1 TSL 1 (best) BASIC13.08□□□□□ -0.32
Trav6-3Q5R1E6 Pfdn4-201ENSMUST00000063682 935 ntAPPRIS P1 TSL 1 (best) BASIC13.08□□□□□ -0.32
Trav6-3Q5R1E6 Lgr6-201ENSMUST00000044828 6675 ntAPPRIS P1 TSL 1 (best) BASIC13.08□□□□□ -0.32
Trav6-3Q5R1E6 2810408A11Rik-204ENSMUST00000108621 1455 ntAPPRIS ALT2 TSL 5 BASIC13.08□□□□□ -0.32
Trav6-3Q5R1E6 Oas1b-201ENSMUST00000086377 1832 ntTSL 5 BASIC13.08□□□□□ -0.32
Trav6-3Q5R1E6 Agrn-206ENSMUST00000180572 6891 ntAPPRIS P1 TSL 5 BASIC13.08□□□□□ -0.32
Trav6-3Q5R1E6 Spock3-204ENSMUST00000119068 3201 ntAPPRIS P3 TSL 5 BASIC13.08□□□□□ -0.32
Trav6-3Q5R1E6 Ckap4-201ENSMUST00000053871 3089 ntAPPRIS P1 TSL 1 (best) BASIC13.08□□□□□ -0.32
Trav6-3Q5R1E6 Atp6v0a1-203ENSMUST00000103110 2716 ntTSL 5 BASIC13.08□□□□□ -0.32
Trav6-3Q5R1E6 Map3k7cl-201ENSMUST00000026700 1652 ntAPPRIS P1 TSL 1 (best) BASIC13.08□□□□□ -0.32
Trav6-3Q5R1E6 Aftph-201ENSMUST00000035350 3998 ntAPPRIS P3 TSL 1 (best) BASIC13.08□□□□□ -0.32
Trav6-3Q5R1E6 Gm16754-201ENSMUST00000181222 2077 ntTSL 1 (best) BASIC13.08□□□□□ -0.32
Trav6-3Q5R1E6 Noc4l-201ENSMUST00000042147 2075 ntAPPRIS P1 TSL 1 (best) BASIC13.08□□□□□ -0.32
Trav6-3Q5R1E6 Fam178b-202ENSMUST00000170295 2286 ntAPPRIS ALT2 TSL 5 BASIC13.08□□□□□ -0.32
Trav6-3Q5R1E6 Hexb-201ENSMUST00000022169 1905 ntAPPRIS P1 TSL 1 (best) BASIC13.07□□□□□ -0.32
Trav6-3Q5R1E6 2810013P06Rik-201ENSMUST00000186531 2137 ntBASIC13.07□□□□□ -0.32
Trav6-3Q5R1E6 Nefh-201ENSMUST00000093369 3994 ntAPPRIS P1 TSL 2 BASIC13.07□□□□□ -0.32
Trav6-3Q5R1E6 Irf7-202ENSMUST00000097952 1764 ntAPPRIS ALT2 TSL 1 (best) BASIC13.07□□□□□ -0.32
Trav6-3Q5R1E6 Snapc3-201ENSMUST00000030206 1405 ntAPPRIS P1 TSL 1 (best) BASIC13.07□□□□□ -0.32
Trav6-3Q5R1E6 Smox-203ENSMUST00000110180 1617 ntTSL 1 (best) BASIC13.07□□□□□ -0.32
Trav6-3Q5R1E6 Gm26892-201ENSMUST00000181695 1636 ntTSL 5 BASIC13.07□□□□□ -0.32
Trav6-3Q5R1E6 Homer2-206ENSMUST00000207983 1634 ntAPPRIS P3 TSL 1 (best) BASIC13.07□□□□□ -0.32
Trav6-3Q5R1E6 Tmem117-201ENSMUST00000080141 2781 ntAPPRIS P1 TSL 1 (best) BASIC13.07□□□□□ -0.32
Trav6-3Q5R1E6 Ruvbl2-201ENSMUST00000107771 1834 ntAPPRIS P1 TSL 1 (best) BASIC13.07□□□□□ -0.32
Trav6-3Q5R1E6 Slmap-212ENSMUST00000139075 4508 ntAPPRIS ALT2 TSL 1 (best) BASIC13.07□□□□□ -0.32
Trav6-3Q5R1E6 Prkar2b-202ENSMUST00000036497 3378 ntAPPRIS P1 TSL 1 (best) BASIC13.07□□□□□ -0.32
Trav6-3Q5R1E6 C1qtnf5-202ENSMUST00000114816 1259 ntAPPRIS P1 TSL 1 (best) BASIC13.07□□□□□ -0.32
Trav6-3Q5R1E6 Gm15556-201ENSMUST00000122904 663 ntTSL 5 BASIC13.07□□□□□ -0.32
Trav6-3Q5R1E6 Rpl18-204ENSMUST00000209693 535 ntTSL 5 BASIC13.07□□□□□ -0.32
Trav6-3Q5R1E6 Pdrg1-201ENSMUST00000028972 1273 ntAPPRIS P1 TSL 1 (best) BASIC13.07□□□□□ -0.32
Trav6-3Q5R1E6 Gm5417-201ENSMUST00000079706 384 ntBASIC13.07□□□□□ -0.32
Trav6-3Q5R1E6 Cd82-205ENSMUST00000116457 1683 ntAPPRIS P1 TSL 1 (best) BASIC13.07□□□□□ -0.32
Trav6-3Q5R1E6 Slc35f1-201ENSMUST00000105473 4941 ntAPPRIS P1 TSL 1 (best) BASIC13.07□□□□□ -0.32
Trav6-3Q5R1E6 Plpp7-201ENSMUST00000057423 1947 ntAPPRIS P1 TSL 1 (best) BASIC13.07□□□□□ -0.32
Trav6-3Q5R1E6 Ndufv3-201ENSMUST00000046288 1537 ntAPPRIS P4 TSL 1 (best) BASIC13.07□□□□□ -0.32
Trav6-3Q5R1E6 Cd2bp2-201ENSMUST00000035771 1309 ntAPPRIS P1 TSL 1 (best) BASIC13.07□□□□□ -0.32
Trav6-3Q5R1E6 Tmed3-201ENSMUST00000058488 1346 ntAPPRIS P1 TSL 1 (best) BASIC13.07□□□□□ -0.32
Trav6-3Q5R1E6 Oas1g-201ENSMUST00000086368 1977 ntAPPRIS P1 TSL 1 (best) BASIC13.07□□□□□ -0.32
Trav6-3Q5R1E6 Clcn3-203ENSMUST00000093490 5518 ntAPPRIS ALT1 TSL 1 (best) BASIC13.07□□□□□ -0.32
Trav6-3Q5R1E6 Adgrb2-205ENSMUST00000106017 5104 ntAPPRIS P3 TSL 1 (best) BASIC13.07□□□□□ -0.32
Trav6-3Q5R1E6 Kbtbd2-201ENSMUST00000114321 3868 ntAPPRIS P1 TSL 1 (best) BASIC13.07□□□□□ -0.32
Trav6-3Q5R1E6 Pacs1-201ENSMUST00000025786 4339 ntAPPRIS P1 TSL 1 (best) BASIC13.07□□□□□ -0.32
Trav6-3Q5R1E6 Slc39a7-201ENSMUST00000025186 2244 ntAPPRIS P1 TSL 1 (best) BASIC13.07□□□□□ -0.32
Trav6-3Q5R1E6 Cactin-201ENSMUST00000050867 2715 ntAPPRIS P1 TSL 1 (best) BASIC13.06□□□□□ -0.32
Trav6-3Q5R1E6 Eda-209ENSMUST00000113783 4930 ntTSL 5 BASIC13.06□□□□□ -0.32
Trav6-3Q5R1E6 Bcor-204ENSMUST00000115513 6941 ntAPPRIS ALT2 TSL 1 (best) BASIC13.06□□□□□ -0.32
Trav6-3Q5R1E6 Gnal-201ENSMUST00000025402 5616 ntTSL 1 (best) BASIC13.06□□□□□ -0.32
Trav6-3Q5R1E6 Alg5-201ENSMUST00000044567 1471 ntAPPRIS P1 TSL 1 (best) BASIC13.06□□□□□ -0.32
Trav6-3Q5R1E6 Klf7-201ENSMUST00000055001 1477 ntTSL 1 (best) BASIC13.06□□□□□ -0.32
Trav6-3Q5R1E6 Ttc13-202ENSMUST00000117624 3096 ntTSL 5 BASIC13.06□□□□□ -0.32
Trav6-3Q5R1E6 Ube2w-201ENSMUST00000117146 2181 ntAPPRIS P1 TSL 1 (best) BASIC13.06□□□□□ -0.32
Trav6-3Q5R1E6 Dmc1-201ENSMUST00000023065 2192 ntAPPRIS P1 TSL 1 (best) BASIC13.06□□□□□ -0.32
Trav6-3Q5R1E6 Arfip1-202ENSMUST00000107687 1714 ntTSL 5 BASIC13.06□□□□□ -0.32
Trav6-3Q5R1E6 Kdf1-201ENSMUST00000042919 1708 ntAPPRIS P2 TSL 1 (best) BASIC13.06□□□□□ -0.32
Trav6-3Q5R1E6 Gm11336-201ENSMUST00000118168 334 ntBASIC13.06□□□□□ -0.32
Trav6-3Q5R1E6 Smim14-202ENSMUST00000121661 1056 ntAPPRIS P1 TSL 3 BASIC13.06□□□□□ -0.32
Trav6-3Q5R1E6 5430416N02Rik-202ENSMUST00000181873 626 ntTSL 1 (best) BASIC13.06□□□□□ -0.32
Trav6-3Q5R1E6 Gm7213-201ENSMUST00000215977 950 ntBASIC13.06□□□□□ -0.32
Trav6-3Q5R1E6 Gm30025-201ENSMUST00000218555 728 ntBASIC13.06□□□□□ -0.32
Trav6-3Q5R1E6 Prss21-201ENSMUST00000024928 1094 ntAPPRIS P1 TSL 1 (best) BASIC13.06□□□□□ -0.32
Trav6-3Q5R1E6 Espn-202ENSMUST00000049305 1142 ntTSL 1 (best) BASIC13.06□□□□□ -0.32
Trav6-3Q5R1E6 Tubgcp4-202ENSMUST00000110657 1992 ntTSL 1 (best) BASIC13.06□□□□□ -0.32
Trav6-3Q5R1E6 Spg21-201ENSMUST00000034955 2680 ntAPPRIS P1 TSL 1 (best) BASIC13.06□□□□□ -0.32
Trav6-3Q5R1E6 Atg7-215ENSMUST00000183165 2012 ntTSL 5 BASIC13.06□□□□□ -0.32
Trav6-3Q5R1E6 AC093043.3-201ENSMUST00000226531 2273 ntBASIC13.06□□□□□ -0.32
Retrieved 100 of 76,532 protein–RNA pairs in 36.4 ms